mRNA_L-elsbetiae_contig5030.13051.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5030.13051.1
Unique NamemRNA_L-elsbetiae_contig5030.13051.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5030.13051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5030contigL-elsbetiae_contig5030:9297..12420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816508.0628135-CDS-L-elsbetiae_contig5030:9296..94421622816508.0628135-CDS-L-elsbetiae_contig5030:9296..9442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5030 9297..9442 -
1691683610.2036831-CDS-L-elsbetiae_contig5030:9296..94421691683610.2036831-CDS-L-elsbetiae_contig5030:9296..9442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5030 9297..9442 -
1622816508.0735993-CDS-L-elsbetiae_contig5030:12287..124201622816508.0735993-CDS-L-elsbetiae_contig5030:12287..12420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5030 12288..12420 -
1691683610.2179596-CDS-L-elsbetiae_contig5030:12287..124201691683610.2179596-CDS-L-elsbetiae_contig5030:12287..12420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5030 12288..12420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5030.13051.1prot_L-elsbetiae_contig5030.13051.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5030 9297..12420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5030.13051.1

>prot_L-elsbetiae_contig5030.13051.1 ID=prot_L-elsbetiae_contig5030.13051.1|Name=mRNA_L-elsbetiae_contig5030.13051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MQEGTAAIPVQQASAEGKEIVPLEGEREEGERERTTSAEGSGPPASAQSD
NDSVPPSPLPVPVRAASDISATLGRVGAGLGGGSGGSTERRSG
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mRNA from alignment at L-elsbetiae_contig5030:9297..12420-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5030.13051.1 ID=mRNA_L-elsbetiae_contig5030.13051.1|Name=mRNA_L-elsbetiae_contig5030.13051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3124bp|location=Sequence derived from alignment at L-elsbetiae_contig5030:9297..12420- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGAGGGCACTGCCGCCATTCCTGTTCAGCAGGCCTCGGCAGAAGG
AAAGGAGATAGTACCACTCGAGGGAGAGAGAGAAGAAGGAGAGAGGGAAC
GGACGACCTCGGCTGAAGGTTCCGGGCCTCCTGGTGAGCGTTCTTTCGAC
CCGTTTGTTGTGCCTACGCCTCCGGTCTAACGTTGTTGTTGTTGTTGTTG
CTGTTGTTTGGTGTTGTTTCTCACATCGGCTCTCTCCAGAGCATCCGTGG
GAGGCCCCGTGATCACAAAACATGGCACCCCCAACGCCGCTGAAGGAAAA
TACAAACATATGGTGCATACGTACCCTACGAGAGACAGCACATTCTCTGA
GCCCCTTGTACGTATGGAGGTTCTACCAGTGCTGCTCGCCGGTTCCAGGA
TTTCGATCCGCAGAATCACTCTTTCGGCCGCAGTAGGGATCGCCAATGAA
CTTTGGGCGCCAGATGAAAACACGCACTTTGAATTGTATGTACTCTCTAG
GCAAGACAAAAAAAAGAGCTGGCGCAGAATGCTGTAAGTCAAATATTACT
TTGCGCCGATTGCGTGTTCTCGGCCTATACTACGGCTTTCACCAAATTTC
CAGGTGCTGTGTTATCATAAGATAAGCTCCTAGTGTATGCCATGCTTTTC
TTTCGAAGACATGTGCAGGAAGACAAGCATGATGCCTGTGCGCGAACGCG
ACTTTTATGAGAAAAACGCTCCTCTCGTCTGCCGCTCGCTGTGTGTATTT
CGACGCGCCACTTTCGGTGCTGGGTCCTCACGGTACATTGAGTCTACGTG
CCAAATTTCGTGACCATGGGTTCCGTCTGCGGCGCGTTCTCGTCATCGGT
TAATAGTCACGCTGAGTGAGGCCTATAGAGGTTGCCCCGCACAGAAATAT
TTCCCTTTTGTTTTTTGTTTTTTTTTCACCGGCGAGCAGCACTGCTTCTT
CTGCTTGTTTGGGGGTGCACAATAATTGAACAAGAAAGAAAAAGTACGTG
TGCATATGTCGATGTTCTCGATGTTTGGCCCTGCCCTTACCTACCACCGT
GAACGACACAAGATAGCACACACCCCTGGACCGATTTTCAAAGCTGGAGA
ACCTCCACAGCGAGAAGAGAAGAGTGCCAGCCCCGAACAGGGCGGCGTTG
GAAATATCTAGTCTAGAGCTGCCCGAAACGTGTCGTTTGGTATGTACTAT
AACCATACTTTTGTTGCGGAATGACCGAGCTTTAAAAATCGGTCCCCAGG
GGGGGTGTTATCTTGTGTCATGTATGGGACATCGGCCGGAGTCCCGTGTA
TGTACGTGTGGTCTTATTTTTTGTGGGAGGTGTGAGCGGTGCTATGGAGT
GTCCCGGAGATTTTTAGTCATGCGTAGTAGTTATACACACGCCCTTTCTG
CAAGAACCGCAGGAGGAAGGTGGGGCAAAAAATAAAATAAAAAGAGGAAA
AAAGCCCCAGTGTTTATTTACCCCCTCCTGTGTGACCCCGGCGGAGACGT
CATGCTGTACATTGAAGCACCGCCGCAACGTGCATGTTGTACACACACCG
AAGTGTGTGGCAGGCGCCCGGAATAAATGGGACGAAAACACACACACACA
CAAACACACATTTCTCCCCCATCCCGCCTCGCATTTCTTTTGTAGTGTGT
GTCACCTCCAGCCTCCATCCAAAGCGGCGGTACGCTACTGCGTAAAACCC
ACGTTCGATGCACGCACGGACCACTTCAGTTTCGGAGCGGTGGGAAGGCG
CCTGGGGGGTCGATGACATGCGTTTACATAGTATGTACCACCCCATTTCA
TTGCAGTATAAATACCACTTACATTGCGTTGTACCGTGTGCATGGTAAAT
AGTACTGTCTACTGTCTACTCAGCCCCCTTGACAGTAGTGTCATTGGGGC
CCCGCCGCCTTTTTTATGCCGCGGGGAATATGACGTTTTTGGCAACCCCT
TGAGAAACCGTTTAAAACCACTTGGATATACAGGGGCAGAGCAGCTGGCA
GACAAACGCCACGATAGGTCCGCCATCGCAGATTAAGACAGCGATGTCTT
CGATACATCCTGTAGCTAAGACGATACATCCTGTAGCTAAGATAAGAGAG
ATGCTAAAAAGCCAAACTTCCGCTTGTAGAGGACGCTTGTCCCCGAAATA
TCAGAGTGCCCGACTACATCGCCTGGTGAAAGAGAGAGAGGACAGGACTG
TGAAAAGGGAGGGAGAGAGCCAGCACAACGCGGGGCATCGGTGAATCTCC
CAGCCCACACATTCAATAAGTCACAAGAGGGTTTGCAGCATCGTGAATTT
CTCGGCCGGTAGATGTTAAGCCCTGGATATGTTTTGGGCCTTGGATAGCC
AAGAAGATAAGCTAACTTGCTGACCCAAGAGCCGGGCGCATGATAACTTG
TCCCCGAAACCGCTCCCTCCGCGCCAACCAAGGTTTCGACGGGAGCCTTT
TTTATCGCAGCTGGAACGCGCACACACAAGTCAGTCCATCGACAACATAA
TATCGTAGCAGTGTTAGTTTGGGTAGCCAACAACATGTCGTGCCTTACAG
GCAGCATAGGTGAGGTGGTGGACTGGCAAAACGTGAAAAACTTTTACGGG
GCTGACAGGTGTTGGGCCTTGCCTACCTGAAATGCCTCCGTATCTCCGGC
CTATATCCCAAAACGCTATTTTACCCCCCCGGCCGAAACAGCCGGCCTCC
GACCGGAATTTTTCGTCTACCAACACTACACGGTTCTATGCCCGCCTCTA
CCAACACAAACGGTGGTCTAGTGCTGTAGTTTTGTCGAAAAAAGACGGCG
CGGAAAAAGTGCGGCGGAATCATCGCCAACAACACTGTTGAGGGCTTTCT
TACGGGGGTGCGAGGGTCGGCGGTGCATCAAAGACTATACCCGACCCCAA
GCACACCACGAGCCCCCCCCCCCCATCCGATATTGAGTATCCCGCCCCCG
CCCGTGTGCCTCGTTTCCCCGTGTGCAGCCTCCGCGCAGAGCGACAACGA
CTCCGTACCGCCGTCACCGCTTCCCGTCCCGGTACGAGCCGCCAGTGACA
TCTCAGCTACTTTGGGGAGGGTCGGCGCCGGCCTCGGCGGGGGCTCCGGC
GGATCGACGGAACGGAGGAGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5030:9297..12420-

>mRNA_L-elsbetiae_contig5030.13051.1 ID=mRNA_L-elsbetiae_contig5030.13051.1|Name=mRNA_L-elsbetiae_contig5030.13051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig5030:9297..12420- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGAGGGCACTGCCGCCATTCCTGTTCAGCAGGCCTCGGCAGAAGG
AAAGGAGATAGTACCACTCGAGGGAGAGAGAGAAGAAGGAGAGAGGGAAC
GGACGACCTCGGCTGAAGGTTCCGGGCCTCCTGATGCAAGAGGGCACTGC
CGCCATTCCTGTTCAGCAGGCCTCGGCAGAAGGAAAGGAGATAGTACCAC
TCGAGGGAGAGAGAGAAGAAGGAGAGAGGGAACGGACGACCTCGGCTGAA
GGTTCCGGGCCTCCTGCCTCCGCGCAGAGCGACAACGACTCCGTACCGCC
GTCACCGCTTCCCGTCCCGGTACGAGCCGCCAGTGACATCTCAGCTACTT
TGGGGAGGGTCGGCGCCGGCCTCGGCGGGGGCTCCGGCGGATCGACGGAA
CGGAGGAGTGGGCCTCCGCGCAGAGCGACAACGACTCCGTACCGCCGTCA
CCGCTTCCCGTCCCGGTACGAGCCGCCAGTGACATCTCAGCTACTTTGGG
GAGGGTCGGCGCCGGCCTCGGCGGGGGCTCCGGCGGATCGACGGAACGGA
GGAGTGGG
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