mRNA_L-elsbetiae_contig5028.13044.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5028.13044.1 vs. uniprot
Match: D7FLL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL9_ECTSI) HSP 1 Score: 733 bits (1892), Expect = 2.190e-243 Identity = 594/1149 (51.70%), Postives = 653/1149 (56.83%), Query Frame = 1
Query: 1 PARSLTRKQEKLPXXXXXXPLEAPWKPPPPGFDARTLRRQASGLRDEAAAALRDEEAVRRSSLRLAEVLGGTIENGKENASLARERLRCLHAALRRLRGERARHREAVEAAVAWQDSLEELREKLTSSEERRRRAERAKGDVQRALAAAVDENRTAEEELAPLEHALEAALRRDEVAAEIERQARQEELADAFLHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREAGDESLCQYTHTSPLLIPTVAWGFRVFAEACRRSKGMRRLAAAREARAGAERRVVLGEAVAAWAVEAALARGGREARRRRETETARLCLARWKVFAAFEHRFRAERWRRTCTRVMAAWRGAVGEARRDHDLDRRREALVLLRCFRGWRVLRAKSTLTPQEYSDRHKTAHRHRLGRLFGAWHLATLASSASSKAVVRGFHRRRSVAMLAADFRAWASLSRARRWRRRRFLRHGLETLASFATGSGVAAAAAAAAFPN---KRRQGTRRWEWNSAAVGALVGPGDSSLFLADRARRGLTRAVLDDRVGGEVSAGGVRAHDPEAVASAHRRRAGLSRGLRALLQTGPAELRRTRQPRFVRHGSGGERGAAAAVASARATRMACRTWLEAARRRRRTRDGADAAAAAWRRNALVQAVRELRRFALTAARQRRADRASSLRKSFTALRQGCAISRRQHSACGALRNALVSRRLGLLGSAMEALATFGEVSGASG-AXXXXXXXXXXXXXXXXXREALGAAWRWWVGGWLRRQAEGIRIRELHAQREKLRDRDLAEQLAKAQHESAELQKEAAAVGTELQRTKILAQEQEEALVSSRRSLAEAAXXAAAIKARLGPAARFKTGRTGNRKAYKRGAGAARMRNRRVAQQRGAARVLSEAEARXXXXXXXXXXXXXXXXXXXXXXX-GQEEADRAALEGALGAARRYAEDLERGRVRVAEXXXXXXXXRAATETLLERVNGLARKAEEEATEAAKGSSVAESERAALSLEASTAEARAREMMAILDEREGEAAALRRRLATKSDKRQEKRLLLDRGATALSPVVEAAALPANSPSPPLPPPLPLPTCEEAPPALPGGKRAAAXXXAADVPLDRCNVEELKESIALLQQKVEASR 3432
P + + E+LP PL PW+ PPPGFDARTLRRQAS LR EAAAA RDEEAVR S+LRLA +L TIENGKENA+LARERL CLHAALRRLR ER R AV AAV WQ+SLEELREKL S N AE E+ PLE ALEAA RRDEVA E+ERQ R F+VF EACRRS+GMRRLAAAR RAGAERR VL EA+AAWAV AAL RGGREAR+RR E ARL +C RVM AWR AV EA RD DLDRRREALVL RCFRGWRVLRA+S LTPQEY +R TA RHRLGRLF WHLA LASSASS A+V RRR V LA FRAWASLSRAR WRRRR LR GLE LASF TG A A+ F N +RR+ E + AL + + R RR V AGG++AHD EAVASAHRRRA LSRG ALL G +LR R F G GG+ G V S RA R+ TW AAR R R R+G +AA WRR L AV+ L+RFA+ AARQRRADR + L++SF ALRQGCAISRRQ SAC AL+NALVSRRLGLLGSAM LA +G+SG A XXXXXXXXXXXXXX REALGAAWRWWVGGWLRRQAEGIR RE+ A+R R+RDLAEQL + Q ESA LQKEA AV +ELQRTKIL EQEEAL +SRRSLAEA+ A A+K+RLGPAARF T K K G R RR A+Q AARVL AEAR GQEEAD AALEGAL AARRY E +ERG+ RV XXXXXXXX ALSL ASTAEARAREMM ILDERE EAA LRR LA K K +EKRLL R A +PV P++ E P L G AA D PL C+V ELKESIALLQ+KVE+SR
Sbjct: 157 PFEPIVLQNEQLPPAPPAPPLGLPWRAPPPGFDARTLRRQASALRGEAAAAHRDEEAVRCSTLRLAGILRETIENGKENAALARERLCCLHAALRRLREERVRQGVAVNAAVTWQESLEELREKLESXXXXXXXXXXXXXXXXXXXXXXXXTNGAAEAEVIPLERALEAAWRRDEVAEEMERQKR-----------------------------------------------------------------------------------------------------FQVFVEACRRSQGMRRLAAARHERAGAERREVLREALAAWAVGAALERGGREARQRRAVEAARLXXXXXXXXXXXXXXXXXXXXXXSCKRVMDAWRSAVTEAWRDRDLDRRREALVLRRCFRGWRVLRARSILTPQEYVERRHTADRHRLGRLFDRWHLAALASSASSTAIVTVVRRRRDVDTLAHSFRAWASLSRARHWRRRRALRRGLEALASF-TGREDGVAGASQMFSNSPWRRRRTGFEGEVRRGSTAALSVELSPAHWGGGRGRRC-------------VGAGGLKAHDLEAVASAHRRRAALSRGFLALLCQGSRQLRVGRGRLFSVLGGGGKGGV---VVSVRAARIGFLTWCGAARARGRAREGMEAAEVVWRRKGLAGAVKGLKRFAVVAARQRRADRTNVLKRSFVALRQGCAISRRQKSACCALQNALVSRRLGLLGSAMARLAA----TGSSGPAAIXXXXXXXXXXXXXXEREALGAAWRWWVGGWLRRQAEGIRTREVEARRRAKRERDLAEQLEQVQQESAALQKEALAVESELQRTKILVLEQEEALEASRRSLAEASAAATAVKSRLGPAARFDTVHAA--KTTKDG----RQGTRRPARQTAAARVLVSAEARQRAAAAKAAERREWAAAEARGKLRGQEEADEAALEGALEAARRYGEAVERGQARVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSLAASTAEARAREMMVILDEREREAAKLRRALAAKDAKLKEKRLLRRR---ATAPVEAMEVSPSHR--------------EGTAPLLTGAGNVAAT----DAPLAACDVHELKESIALLQKKVESSR 1156
BLAST of mRNA_L-elsbetiae_contig5028.13044.1 vs. uniprot
Match: A0A6H5J7Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Z0_9PHAE) HSP 1 Score: 560 bits (1444), Expect = 1.300e-179 Identity = 459/890 (51.57%), Postives = 504/890 (56.63%), Query Frame = 1
Query: 28 EKLPXXXXXXPLEAPWKPPPPGFDARTLRRQASGLRDEAAAALRDEEAVRRSSLRLAEVLGGTIENGKENASLARERLRCLHAALRRLRGERARHREAVEAAVAWQDSLEELREKLTSSEERRRRAERAKGDVQRALAAAVDENRTAEEELAPLEHALEAALRRDEVAAEIERQARQEELADAFLH------------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREAGDESLCQYTH----------TSPLLIPTVAWGFRVFAEACRRSKGMRRLAAAREARAGAERRVVLGEAVAAWAVEAALARGGREARRRRETETARLCLARWKVFAAFEHRFRAERWRRTCTRVMAAWRGAVGEARRDHDLDRRREALVLLRCFRGWRVLRAKSTLTPQEYSDRHKTAHRHRLGRLFGAWHLATLASSASSKAVVRGFHRRRSVAMLAADFRAWASLSRARRWRRRRFLRHGLETLASFATGSGVAAAAAAAAFPNKRRQGTRRWEWNSAAVGALVG-PGDSSLFLADRARRGLTRAVLDDRVGGEVSAGGVRAHDPEAVASAHRRRAGLSRGLRALLQTGPAELRRTRQPRFVRHGSGGERGAAAAVASARATRMACRTWLEAARRRRRTRDGADAAAAAWRRNALVQAVRELRRFALTAARQRRADRASSLRKSFTALRQGCAISRRQHSACGALRNALVSRRLGLLGSAMEALATFGEVSGASG-AXXXXXXXXXXXXXXXXXREALGAAWRWWVGGWLRRQAEGIRIRELHAQREKLRDRDLAEQLAKAQHESAELQKEAAAVGTELQRTKILAQEQEEALVSSRRSLAEAAXXAAAIKARLGPAARFKT 2625
EKLP PLE PW+ PPPGFDARTLRRQAS LR EAAAA RDEEAVR S+LRLA +L TIENGKENA+LARERL CLHAALRRLR ERAR AV AAV WQ+SLEELREKL N AE E+ PLE ALEAA RRDEVA E+ERQ RQEELADAF R XXXXXXXXXXXXXXXX G G E Y TSPLL+PT++WGF+VF EACRRS+GMRRLAAAR+ RA AERR VL EA+AAWAV AAL RGGREAR+RR E ARLC R WH A LASSASS A+V G RRR V LA FRAWASLSRARRWRRRR LR GLE LASFA G A+ F N R R G+ P + SL RG R V + GG+ HD EAVASAHRRRA LSRG ALL G ++R R F G GG+ G V S RA R+ W AAR R R + + A WRR L AV++L+RFA+ AARQRR DR + LR+SF ALRQGCAISRRQ SAC AL+NALVSRRLGLLGSAM LA +G+SG A XXXXXXXXXXXXXXX REALGAAWRWWVGGWLRRQAEGIR RE+ A+R RDRDLAEQL + +SA LQKEA AV TELQRTKI+ EQEEAL +SRRSLAEA+ AAA+K+RLGPAARF T
Sbjct: 102 EKLPPAPPAPPLELPWRAPPPGFDARTLRRQASALRGEAAAAHRDEEAVRCSTLRLAGILRETIENGKENAALARERLGCLHAALRRLREERARQGVAVNAAVTWQESLEELREKLEXXXXXXXXXXXXXXXXXXXXXXXXXANGAAEAEVIPLERALEAAWRRDEVAEEMERQERQEELADAFFRXXXXXXGSRSEPRRDSCSTGELMHSALAEERNGRRLPADVGDGEXXXXXXXXXXXXXXXXTVVDNIDDTGNGGRIERGGPCGGEGDGDYGRYGFKSPTAHVTSPLLLPTLSWGFKVFVEACRRSQGMRRLAAARQERAEAERREVLREALAAWAVGAALERGGREARQRRAVEAARLCXXXXXXXXXXXRR------------------------------------------------------------------------------WHFAALASSASSTAIVTGVRRRRDVDTLAHSFRAWASLSRARRWRRRRALRRGLEVLASFAGREG-GVMWASQTFSNSRWHRPRTGVEGEVRRGSTAPLPAELSLAHWGGGSRG-RRCVRE---------GGLETHDLEAVASAHRRRAALSRGFLALLHQGSRQIRVGRGRWFCVPGGGGKGGV---VVSVRAARIGLLRWCGAARARGRATESMEEAEVVWRRKRLAGAVKKLKRFAVVAARQRRVDRKNVLRRSFVALRQGCAISRRQKSACSALQNALVSRRLGLLGSAMARLAG----AGSSGPAAXXXXXXXXXXXXXXXEREALGAAWRWWVGGWLRRQAEGIRTREVEARRRAKRDRDLAEQLEQVHQDSAALQKEAVAVETELQRTKIMVLEQEEALEASRRSLAEASAAAAAVKSRLGPAARFDT 895
BLAST of mRNA_L-elsbetiae_contig5028.13044.1 vs. uniprot
Match: A0A6H5J9F1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9F1_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.710e-29 Identity = 116/254 (45.67%), Postives = 133/254 (52.36%), Query Frame = 1
Query: 2686 RRVAQQRGAARVLSEAEARXXXXXXXXXXXXXXXXXXXXXXX-GQEEADRAALEGALGAARRYAEDLERGRVRVAEXXXXXXXXRAATETLLERVNGLARKAEEEATEAAKGSSVAESERAALSLEASTAEARAREMMAILDEREGEAAALRRRLATKSDKRQEKRLLLDRG-----ATALSPVVEAAALPANSPSPPLPPPLPLPTCEEAPPALPGGKRAAAXXXAADVPLDRCNVEELKESIALLQQKVEAS 3429
RR A+Q AARVL AEAR GQEEAD+AALEGAL AARRY E +ERG+ RV + +A+ LLERV+ L RK A+ +S AESERAALSL AS AEARAREMM ILDERE EAA LRR LA K K +E RLL R AT +SP + P S A A D PL C++ ELKESIALLQ+KVE+S
Sbjct: 10 RRPARQTAAARVLVSAEARQRAAAAKAAERRERAAAEARGKLLGQEEADQAALEGALEAARRYREAVERGQARVEDAEADRRRMQASAAKLLERVDELTRKXXXXXXXXAREASSAESERAALSLAASMAEARAREMMVILDEREREAAKLRRALAAKDAKLKE-RLLRRRASAPVDATEVSPSHQGGTAPLLS--------------------------GAGVVAATDAPLAACDIYELKESIALLQKKVESS 236 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5028.13044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5028.13044.1 >prot_L-elsbetiae_contig5028.13044.1 ID=prot_L-elsbetiae_contig5028.13044.1|Name=mRNA_L-elsbetiae_contig5028.13044.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1147bp PARSLTRKQEKLPPPPPAPPLEAPWKPPPPGFDARTLRRQASGLRDEAAAback to top mRNA from alignment at L-elsbetiae_contig5028:2634..13241- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5028.13044.1 ID=mRNA_L-elsbetiae_contig5028.13044.1|Name=mRNA_L-elsbetiae_contig5028.13044.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10608bp|location=Sequence derived from alignment at L-elsbetiae_contig5028:2634..13241- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5028:2634..13241- >mRNA_L-elsbetiae_contig5028.13044.1 ID=mRNA_L-elsbetiae_contig5028.13044.1|Name=mRNA_L-elsbetiae_contig5028.13044.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6882bp|location=Sequence derived from alignment at L-elsbetiae_contig5028:2634..13241- (Laminarionema elsbetiae ELsaHSoW15)back to top |