mRNA_L-elsbetiae_contig502.13033.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig502.13033.1
Unique NamemRNA_L-elsbetiae_contig502.13033.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig502.13033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig502contigL-elsbetiae_contig502:14063..16933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816506.0225132-CDS-L-elsbetiae_contig502:14064..141451622816506.0225132-CDS-L-elsbetiae_contig502:14064..14145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig502 14065..14145 -
1691683608.6618195-CDS-L-elsbetiae_contig502:14064..141451691683608.6618195-CDS-L-elsbetiae_contig502:14064..14145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig502 14065..14145 -
1622816506.0346835-CDS-L-elsbetiae_contig502:16702..169331622816506.0346835-CDS-L-elsbetiae_contig502:16702..16933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig502 16703..16933 -
1691683608.6706407-CDS-L-elsbetiae_contig502:16702..169331691683608.6706407-CDS-L-elsbetiae_contig502:16702..16933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig502 16703..16933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig502.13033.1prot_L-elsbetiae_contig502.13033.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig502 14065..16933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig502.13033.1

>prot_L-elsbetiae_contig502.13033.1 ID=prot_L-elsbetiae_contig502.13033.1|Name=mRNA_L-elsbetiae_contig502.13033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
VGHLVRRQEIFGPEESDIPTGILTPPDATSARRSPLKRLQTISRASADGY
PLPPRSQVSEEHTTAGSTSPRTAMDDVDDSWCVTDVDEDSDVALVASGTR
EGDY
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mRNA from alignment at L-elsbetiae_contig502:14063..16933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig502.13033.1 ID=mRNA_L-elsbetiae_contig502.13033.1|Name=mRNA_L-elsbetiae_contig502.13033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2871bp|location=Sequence derived from alignment at L-elsbetiae_contig502:14063..16933- (Laminarionema elsbetiae ELsaHSoW15)
GTCGGTCACCTGGTGCGGAGGCAGGAGATTTTTGGGCCCGAAGAAAGTGA
CATACCCACGGGAATCCTGACCCCACCCGACGCCACTAGTGCGCGCCGTT
CGCCCCTCAAGAGGCTGCAGACGATATCTCGAGCCTCAGCGGATGGCTAC
CCTCTACCCCCACGTAGCCAGGTATCGGAGGAACATACCACGGCTGGATC
CACGTCACCGCGAACAGCCATGGACGACGTGGTAAGCGTAGACGCGGACG
AGTTTGTACTCGTGGCACTTTCTTTGCGTCGGAAAACAATACAAGTTGTT
GTTTCTTCACATTTAAAACCGTTCCGATCTCTCCACACAGTACCTCCCTA
CCGTGACACAAGATACCACGGGTACAGACCCCCCCCCCCCACAATAACAC
CCCCCGTGGTAATATTTCCACGCTCAGAATAATGAGCCCCGTTTATCACC
AGGGTACCGAAGATAATACCCCCCCTGAGTTTACACCGTATAAAATCACG
GGGCTCCTGCTATTCGGTGGTTACGAGACGACACACACAAGCTTTTGCTG
CGTGAAACCGGCTCTTCTGTTTTCTAGATGGATAGATATGCTTTTTGCGT
TGCTCGAAAGCGTGCAGGGGTAAGAGATTGGCAATACAGCACATGAGCAG
TTGTTGTGTTGTTATCTTCACATTAAAAACCGTTCAAACATCTCCATCCA
GTAAGGACCTCCGCTGCCCGTACTTACTCAACACTTGATGCGGTTAGTGA
GTTCTCGTGGTAAGCAATCAGAAAATCAAACCAGTACTCCTATTGTGGAG
CCCCCTACTCCCCTCTACACGCTATGCGAGTTAAAAAAACAACTGGACAA
GCCAATATCACCAACCGGGGGGATACACTCCCTGGTTCTATCTTCGTACC
CCAACAGTCCCGGGATGTTCCGTGCCGGGTTTTCGCCGGTCAGGCCCACA
CATCTAGTCCTGCCCACCGATTATACCGCCCAAATGATGAAACAAGAAAG
GGCAAATGAGCAGTGTCACGGTGAACATGTGCGGGTATGATTCAGCCGGT
TCAAACGGCAATATAGCGGGCACTGGCACCATACAATGCTGCTTGTTTTG
TGCCTTAAACCCCCGTGTTCACCAACGCTCGGATGCTCCGATTAAATTTG
GATAGTAAAGGCATGGTATGTCGTCTATGTACTACATGTACCAACGTTCT
GTATTATCCCTGGGCACAGTAATAGCTCCGCCTTTACGAATGGACTCAGC
AAAAAAATGATTGTAGAACTGCGGTGCTGTATTGCGGATCCGCAGACCTC
CGCACCGGCGTTATAAATGGCCCGCCCTCATACGCCGGTATTTACGGCTC
TTTGACGGGCTCAATCCGAGCCAGCCGATTTCACCGGCACTAATCAGGAA
TCCGACCGTGTAAATAGCAGAAATGCGGCATATAATGCAAACGGTCATCA
CCCCGCCTTGTTATCACCCCCTTCGAAGGCCCTCACGGCATGCATTTATC
GCCGGGCGACAATAGATACCACCCCCCCCCACAATATCACCCCCGGTGAT
AATATTTCCGAGCGTCTAGATGTATCACGGGGGGGTGGTATCTTGTGTCA
CTTACGGTATGTCCGTACTATTCCAACACATGATGCGGTCAATCCCCGTG
GTCGCAGGCTAACTTATACCTAAAAAAGGTGTTCGAAAATATGATGTACC
CGAAGGGTCAGCAAAGCGATAAAAGTCAAAGCCAAATATTGTGGAGCCCC
CTGCTCCCCTCTGCACGCTGTGCGAGGTACAAAACAAAACTGGACAAGCC
AACATCACCAACCGGGGGTGGTATACACCCCTTGGTTCTATATTGGTATC
CTAACAATGCCAGGGTGTTCCGTGCCGGGTTCTGACCGGCCAGGCCCACA
AATCTAGTCCTCCTCACCGATTATACCGCCCACATGATAGAAAAACAAGA
GAGGGCGAAAAGGACCTCGGATAAGACAAGGTGCCAGCCGGTGGTGGTGC
AAGATGATACAGCAGTGGGGAGGAAGGAGATTAGCCGATAATTGATTAAA
TCCGCAACATGTCACGCTACTGCGCCCGCCTCCGCCCTCTTGCGTACGTT
GCGTGCAGTTTCGATCGATTCCGGCTTCGTTCTCCTGTTGGTTGTTGTCG
TGTTGTTTCTGTTGCTGGGTCCTTTGTTGTCTCGTTCGATCGCCCGTTGT
CGGCTAGCCTCCTCCTCCTTCTTGTGCCAGGAGGTCATAAACCTTTCAGC
TCCCCGCAGCACCCCCGTATGCCACGATACTCCCCCCTTCACCCTCGCTG
CTGTCGGCCATGTGGCTCTGGGGATCCCGAACGTTCGTGGTTGTTCGGCC
GTAGAGTCGTGCGTGGCCCCGAACGCCTTAATGAAAGTCGTCCTTCAGGC
ACTTCCCCCAAGTACATGAGGTTGGAACCTGCACTATACAGTAGATAAAA
TGCTCAGTATTACCAGATACTGTGTTGGCTTGTCCAATGTTTTTTTTCTA
CCTCGCATAGCGTGTAGAGAGGGGAGCGGGGGGCTCCACACTATTTGTCT
TTGATTTTTATCGCTGTGCTGTTCGAGTCCATTTATTTTGTATACCTTTT
TCTAGGTACAAGCACGGGAATTGACCGCATTAAGTGTCGGAATAGTATGC
CCATAGGGAGGTAGGTACTGAGTGGAGAGATCGGAACGGTTTTAAATTAA
TGTGAAAAAACACCAACAACAGTATCTCATATCCTGCCTATTTATTGCTG
CTTTCTACCGACGCGAACCCTGCCCCCTGCAATCGTAGGATGACTCGTGG
TGCGTTACGGACGTTGATGAAGACAGTGACGTTGCATTAGTAGCGTCTGG
CACACGCGAAGGAGACTACAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig502:14063..16933-

>mRNA_L-elsbetiae_contig502.13033.1 ID=mRNA_L-elsbetiae_contig502.13033.1|Name=mRNA_L-elsbetiae_contig502.13033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig502:14063..16933- (Laminarionema elsbetiae ELsaHSoW15)
GTCGGTCACCTGGTGCGGAGGCAGGAGATTTTTGGGCCCGAAGAAAGTGA
CATACCCACGGGAATCCTGACCCCACCCGACGCCACTAGTGCGCGCCGTT
CGCCCCTCAAGAGGCTGCAGACGATATCTCGAGCCTCAGCGGATGGCTAC
CCTCTACCCCCACGTAGCCAGGTATCGGAGGAACATACCACGGCTGGATC
CACGTCACCGCGAACAGCCATGGACGACGTGGTCGGTCACCTGGTGCGGA
GGCAGGAGATTTTTGGGCCCGAAGAAAGTGACATACCCACGGGAATCCTG
ACCCCACCCGACGCCACTAGTGCGCGCCGTTCGCCCCTCAAGAGGCTGCA
GACGATATCTCGAGCCTCAGCGGATGGCTACCCTCTACCCCCACGTAGCC
AGGTATCGGAGGAACATACCACGGCTGGATCCACGTCACCGCGAACAGCC
ATGGACGACGTGGATGACTCGTGGTGCGTTACGGACGTTGATGAAGACAG
TGACGTTGCATTAGTAGCGTCTGGCACACGCGAAGGAGACTACGATGACT
CGTGGTGCGTTACGGACGTTGATGAAGACAGTGACGTTGCATTAGTAGCG
TCTGGCACACGCGAAGGAGACTAC
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