mRNA_L-elsbetiae_contig5017.13029.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5017.13029.1
Unique NamemRNA_L-elsbetiae_contig5017.13029.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.960e-45
Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = 3 
Query:    6 PELLALQIFDPLGLSDGAEPGEIKLWREAEIKHGRVTMLASLGVLVAEEYHPFFLGPDYIGPAVDHFQEISAQYPEFWVFSLLGMV 263
            P  L  QIFDPLGLSDGA PG+IK WREAEIKHGRV MLASLGV+VAE+YHPFF+GPDYIGPAVDHFQEISAQ+PEFW FSLLGM 
Sbjct:   30 PNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMA 115
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BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 2.960e-43
Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = 3 
Query:    6 PELLALQIFDPLGLSDGAEPGEIKLWREAEIKHGRVTMLASLGVLVAEEYHPFFLGPDYIGPAVDHFQEISAQYPEFWVFSLLGMV 263
            P  L  QIFDPLGLSDGA PG+IK WREAEIKHGRV MLASLGV+VAE+YHPFF+GPDYIGPAVDHFQEISAQ+PEFW FSLLGM 
Sbjct:  226 PNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMA 311
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BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 6.060e-43
Identity = 68/80 (85.00%), Postives = 75/80 (93.75%), Query Frame = 3 
Query:   24 QIFDPLGLSDGAEPGEIKLWREAEIKHGRVTMLASLGVLVAEEYHPFFLGPDYIGPAVDHFQEISAQYPEFWVFSLLGMV 263
            +IFDPLGL+DGAE G+IKLWREAEIKHGRV MLASLGVLVAEEYHPFF+GPDYIGPAVDHFQEISA++PEFW FSLL + 
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALA 94
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BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 7.300e-43
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 3 
Query:   24 QIFDPLGLSDGAEPGEIKLWREAEIKHGRVTMLASLGVLVAEEYHPFFLGPDYIGPAVDHFQEISAQYPEFWVFSLLGMV 263
            +IFDPL LSDGA+P +IK WREAEIKHGRV MLASLGVLVAE+YHP F+GPDYIGPAVDHFQEISAQYPEFWVFSLLGM 
Sbjct:   60 KIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMA 139
[Close]
BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 7.510e-43
Identity = 68/80 (85.00%), Postives = 75/80 (93.75%), Query Frame = 3 
Query:   24 QIFDPLGLSDGAEPGEIKLWREAEIKHGRVTMLASLGVLVAEEYHPFFLGPDYIGPAVDHFQEISAQYPEFWVFSLLGMV 263
            +IFDPL LSDGAEPGEIKLWREAEIKHGRV MLA++GV+VAE+YHP F+GPDYIGPAVDHFQEISAQ+PEFW FSLLGM 
Sbjct:   61 KIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMA 140
[Close]
BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.430e-39
Identity = 63/90 (70.00%), Postives = 80/90 (88.89%), Query Frame = 3 
Query:   24 QIFDPLGLSDGAEPGEIKLWREAEIKHGRVTMLASLGVLVAEEYHPFFLGPDYIGPAVDHFQEISAQYPEFWVFSLLGMVQHHHQGVRQA 293
            +IFD L L+DGA+PGEIKLWREAEIKHGRV MLA++GV+VAE+YHPFF+GPDYIGPAVDHFQEI+A++P+FW +SLLGM    +  +++A
Sbjct:   58 KIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKA 147
[Close]
BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 4.790e-39
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 3 
Query:   24 QIFDPLGLSDGAEPGEIKLWREAEIKHGRVTMLASLGVLVAEEYHPFFLGPDYIGPAVDHFQEISAQYPEFWVFSLLGMV 263
            +IFDPL LSDGA PG+IK WREAEIKHGRV MLASLG+LVAEEYHP F+G D+IGPA+ HFQEISAQ+PEFW FSLLGM 
Sbjct:   60 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMA 139
[Close]
BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: A0A6H5JG14_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG14_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 7.170e-39
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:  262 YNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 495
            YNTITKAYA+PS VTGEGGL+E+YSPGDLGFDPL + PK +A L  MQTKELNNGRLAMIGIAGMLVQEL+NPADILG
Sbjct:    6 YNTITKAYAEPSPVTGEGGLREEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 83
[Close]
BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: A0A6H5L7D2_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D2_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 6.820e-34
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:  262 YNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 492
            YNTITKAYA+PS VTGEGGL++DYS GDLGFDPL + PK +A L TMQTKELNNGRLAMIGIAGMLVQEL+N  +IL
Sbjct:   36 YNTITKAYAEPSFVTGEGGLRDDYSLGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNSINIL 112
[Close]
BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: A0A6H5JVY1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY1_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 4.290e-33
Identity = 60/78 (76.92%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:  262 YNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 495
            YNTI  A+  PS VTGEGGLKEDY PGDLGFDPL + P  EA L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:   54 YNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7S5_ECTSI1.960e-4583.72Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE2.960e-4383.72LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7Q7_ECTSI6.060e-4385.00Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q6_ECTSI7.300e-4386.25Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI7.510e-4385.00Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI1.430e-3970.00Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI4.790e-3980.00Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A6H5JG14_9PHAE7.170e-3983.33LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5L7D2_9PHAE6.820e-3479.22LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JVY1_9PHAE4.290e-3376.92LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5017contigL-elsbetiae_contig5017:2606..4637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue1.6e-29
Seed eggNOG ortholog2880.D7G7S1
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-06_000600.1
Exons3
Model size498
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5017.13029.1prot_L-elsbetiae_contig5017.13029.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5017 2606..4637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816505.878406-CDS-L-elsbetiae_contig5017:2605..27541622816505.878406-CDS-L-elsbetiae_contig5017:2605..2754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5017 2606..2754 +
1691683608.5917263-CDS-L-elsbetiae_contig5017:2605..27541691683608.5917263-CDS-L-elsbetiae_contig5017:2605..2754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5017 2606..2754 +
1622816505.8924303-CDS-L-elsbetiae_contig5017:3432..35161622816505.8924303-CDS-L-elsbetiae_contig5017:3432..3516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5017 3433..3516 +
1691683608.6051247-CDS-L-elsbetiae_contig5017:3432..35161691683608.6051247-CDS-L-elsbetiae_contig5017:3432..3516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5017 3433..3516 +
1622816505.9055018-CDS-L-elsbetiae_contig5017:4372..46371622816505.9055018-CDS-L-elsbetiae_contig5017:4372..4637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5017 4373..4637 +
1691683608.6163116-CDS-L-elsbetiae_contig5017:4372..46371691683608.6163116-CDS-L-elsbetiae_contig5017:4372..4637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5017 4373..4637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5017.13029.1

>prot_L-elsbetiae_contig5017.13029.1 ID=prot_L-elsbetiae_contig5017.13029.1|Name=mRNA_L-elsbetiae_contig5017.13029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
MILNYLRYRSSTPLGCLTALNLERSSSGARPRSSMDASPCSHRSGFLSPR
STTRSFWALTTSAPLWTTSRRSPLSTPSSGYSPSWAWYNTITKAYAKPSE
VTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIA
GMLVQELINPADILG*
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mRNA from alignment at L-elsbetiae_contig5017:2606..4637+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5017.13029.1 ID=mRNA_L-elsbetiae_contig5017.13029.1|Name=mRNA_L-elsbetiae_contig5017.13029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2032bp|location=Sequence derived from alignment at L-elsbetiae_contig5017:2606..4637+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCCTGAACTACTTGCGCTACAGATCTTCGACCCCCTTGGGTTGTCT
GACGGCGCTGAACCTGGAGAGATCAAGCTCTGGCGCGAGGCCGAGATCAA
GCATGGACGCGTCACCATGCTCGCATCGCTCGGGGTTCTTGTCGCCGAGG
TGAGGTGCAGTGCCTCACGGATCGAGCTACCTGCGGTCTGCGGTCTGAGA
GAGGAGGGTTGTGTCCTGGCAGGTCCATTTGTTCTTGTCACGATTGGCGC
TGAATCTATTGCGATGACGTCCTGCACTGAGTGCCGGGAAACACAGCTGC
AGCCGCGCGCTGCTTGCCCGATGCCACTCGTCCACGTGGCTTGTTGTTGT
TGTCCATGTGCGAAATCTTCCGTGAATTCGGCAGGCTCTATCAACTCTTT
CATGGTGGCGGCTCAAAATTCAGCGGCGAAGTATTTTTTCACCCCACTCC
TCTCACACCGGCTCTATTCTTTGATTTCGCGAAGGGCATGTCAACAACAT
ACAACCCATGGTAGCCTATCACCTCGGATGAAACAAGCAACGCAGTACTT
ATCCCTACCCCTTGCAGTTTCTGGCTCTCTTCCCCTTCCTGTGTACAGCA
GCAGTGTGCATTTGTCCGAATCTAAGGGCGGGGTGTTGCTGAGAGTCGCC
TTTCAGCTAAGCTGAAAAATGCACACCGTGTGTGTCTGTTGTAGACTACA
TGTTATTATAGAAGTAGCAGCTTGGCAACACCGCCGTGAGCTGTCACAGA
ACCTGATTTGCACCAATGCCCGGTACCACTGCTGCTGCACCTCAATCCAT
CTCTCTTTTTGTTTCCTCTCTGTGCAGGAGTACCACCCGTTCTTTTTGGG
CCCTGACTACATCGGCCCCGCTGTGGACCACTTCCAGGAGATCTCCGCTC
AGTACCCCGAGGTAAATGAGACTGCTGTCGGGCTCGCCACTTCACGGTGG
TCCCGCGGAGTGTTGCTTTAGTTGTGTGTAGTACCTCGATGCCGTTTCGT
ACCGAAATACTCATCATCACATACGCCCGGATACATACACACGGAGTTTA
TCTATGTTTGGAGGCGAAAGTGCTTTTGTGGTCCTGGGAGATGAAAAAAA
GACAACAGAGTGGGACAGTCGCTTCAAAAGTAAATCTGCTGCCCCGGCCG
TCACTCAGCTCGACAACTCGACGACTCTTGCAGAACAGCTAAGCTTTTGC
AAGAGATGCCTGCGTTTTGCCCAGAGGTGCAAGTGTAATCCAAAATTGCA
GCGAACCAATAATTAGCACAGAAACCGAGCCTCATAATATGTAGCCACCA
TCTTCGAGAAGGCTGCAACGTCGGTTTGCGAAACCCCGAGAGGTCTGCTT
GAGCGACTGACTGATCGAGGTCAAAACAACCGAAACCGCATCACTGGAAG
CGTAGGAAACGAAGAGATGTTTCCGTTCTGCGCGCACCGGCCAGATTGTA
GCGCGCTGTTTCCTAGGTACACACGGCTACACCCCCAACGGATGAGATGA
TGTGTGTTACAAAATCCAAAAATTAAAAAATCTACAACGGCTGTTTGACA
AATGGCTGGCTGTGAAAATGACATACATGTGGAAATGGAGACCGCTGTCG
CGGTTCTGTTCTCGGTACGTACCTTTGCTGTTGAACCACACTACCCTATT
TGCAAAGCATCGACGTTCTCCTGCGTCTGTTATGTGCGTGACTCTGAGAC
ACTCCCTCCCATCGCTTATCTTCCCCCATCTCACCCTTGATGCCCCCTCC
TCTTCATGAAACACCAGTTCTGGGTATTCTCCCTCCTGGGCATGGTACAA
CACCATCACCAAGGCGTACGCCAAGCCCAGTGAAGTGACCGGCGAGGGCG
GCCTCAAGGAGGACTACAGCCCGGGAGACCTCGGCTTCGACCCGCTCGGC
ATCATGCCCAAGACCGAGGCGGACCTTGTGACGATGCAGACCAAGGAGCT
CAACAACGGCCGCCTGGCCATGATCGGCATCGCCGGCATGTTGGTGCAGG
AGCTCATCAACCCGGCCGACATCCTCGGCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5017:2606..4637+

>mRNA_L-elsbetiae_contig5017.13029.1 ID=mRNA_L-elsbetiae_contig5017.13029.1|Name=mRNA_L-elsbetiae_contig5017.13029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig5017:2606..4637+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCCTGAACTACTTGCGCTACAGATCTTCGACCCCCTTGGGTTGTCT
GACGGCGCTGAACCTGGAGAGATCAAGCTCTGGCGCGAGGCCGAGATCAA
GCATGGACGCGTCACCATGCTCGCATCGCTCGGGGTTCTTGTCGCCGAGA
TGATCCTGAACTACTTGCGCTACAGATCTTCGACCCCCTTGGGTTGTCTG
ACGGCGCTGAACCTGGAGAGATCAAGCTCTGGCGCGAGGCCGAGATCAAG
CATGGACGCGTCACCATGCTCGCATCGCTCGGGGTTCTTGTCGCCGAGGA
GTACCACCCGTTCTTTTTGGGCCCTGACTACATCGGCCCCGCTGTGGACC
ACTTCCAGGAGATCTCCGCTCAGTACCCCGAGGAGTACCACCCGTTCTTT
TTGGGCCCTGACTACATCGGCCCCGCTGTGGACCACTTCCAGGAGATCTC
CGCTCAGTACCCCGAGTTCTGGGTATTCTCCCTCCTGGGCATGGTACAAC
ACCATCACCAAGGCGTACGCCAAGCCCAGTGAAGTGACCGGCGAGGGCGG
CCTCAAGGAGGACTACAGCCCGGGAGACCTCGGCTTCGACCCGCTCGGCA
TCATGCCCAAGACCGAGGCGGACCTTGTGACGATGCAGACCAAGGAGCTC
AACAACGGCCGCCTGGCCATGATCGGCATCGCCGGCATGTTGGTGCAGGA
GCTCATCAACCCGGCCGACATCCTCGGCTAATTCTGGGTATTCTCCCTCC
TGGGCATGGTACAACACCATCACCAAGGCGTACGCCAAGCCCAGTGAAGT
GACCGGCGAGGGCGGCCTCAAGGAGGACTACAGCCCGGGAGACCTCGGCT
TCGACCCGCTCGGCATCATGCCCAAGACCGAGGCGGACCTTGTGACGATG
CAGACCAAGGAGCTCAACAACGGCCGCCTGGCCATGATCGGCATCGCCGG
CATGTTGGTGCAGGAGCTCATCAACCCGGCCGACATCCTCGGCTAA
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