mRNA_L-elsbetiae_contig5009.13017.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5009.13017.1
Unique NamemRNA_L-elsbetiae_contig5009.13017.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5009.13017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5009contigL-elsbetiae_contig5009:5361..6201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size841
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5009.13017.1prot_L-elsbetiae_contig5009.13017.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5009 5528..5995 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816504.7782607-UTR-L-elsbetiae_contig5009:5360..55271622816504.7782607-UTR-L-elsbetiae_contig5009:5360..5527Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5009 5361..5527 +
1691683607.9050536-UTR-L-elsbetiae_contig5009:5360..55271691683607.9050536-UTR-L-elsbetiae_contig5009:5360..5527Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5009 5361..5527 +
1622816504.799302-UTR-L-elsbetiae_contig5009:5995..62011622816504.799302-UTR-L-elsbetiae_contig5009:5995..6201Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5009 5996..6201 +
1691683607.928326-UTR-L-elsbetiae_contig5009:5995..62011691683607.928326-UTR-L-elsbetiae_contig5009:5995..6201Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5009 5996..6201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816504.788694-CDS-L-elsbetiae_contig5009:5527..59951622816504.788694-CDS-L-elsbetiae_contig5009:5527..5995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5009 5528..5995 +
1691683607.9186275-CDS-L-elsbetiae_contig5009:5527..59951691683607.9186275-CDS-L-elsbetiae_contig5009:5527..5995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5009 5528..5995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5009.13017.1

>prot_L-elsbetiae_contig5009.13017.1 ID=prot_L-elsbetiae_contig5009.13017.1|Name=mRNA_L-elsbetiae_contig5009.13017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
MVPPPAPPHCLESDFDQEENPAPVAINRGQIDVSAVAYPRVHSPSVHSQM
RHCCTTAECVNLEELTAGGKKITEQQLTLEGGGGGRTKPEGPSGPEQTAF
RKLSGNFRAAGCLLLALLVRPFLQGRRNVCCSLSSTNRVLELLPPSKTQA
SMQCM*
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mRNA from alignment at L-elsbetiae_contig5009:5361..6201+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5009.13017.1 ID=mRNA_L-elsbetiae_contig5009.13017.1|Name=mRNA_L-elsbetiae_contig5009.13017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=841bp|location=Sequence derived from alignment at L-elsbetiae_contig5009:5361..6201+ (Laminarionema elsbetiae ELsaHSoW15)
AGACAAAATACCTCCGCCACATCCATATACGATGATAAAAAATAAAAAAA
GGTACACAACGACGGCCAGCTCGCGAGGTGGGATGCTCGCGACGATACCA
CAAGAAGGTACTACCTAAAAGTACTGAAGCTGGGGTGTATTACTATGTAA
CTTTCCATCAATTGTCGATGGTGCCTCCCCCCGCCCCCCCCCATTGCCTC
GAATCGGATTTTGATCAAGAAGAAAATCCCGCTCCCGTGGCCATCAACCG
AGGGCAGATAGACGTATCCGCCGTTGCGTACCCACGCGTGCACTCCCCGA
GCGTGCACTCCCAGATGCGTCACTGCTGTACTACTGCAGAGTGCGTAAAC
CTCGAGGAATTAACCGCCGGCGGCAAAAAAATTACGGAACAGCAACTGAC
CCTCGAGGGGGGGGGGGGGGGAAGAACGAAGCCTGAAGGACCGAGCGGGC
CAGAGCAGACCGCTTTCCGGAAACTTTCCGGAAACTTCCGCGCAGCGGGT
TGCTTGCTGCTTGCTCTCCTCGTTCGCCCCTTCCTGCAAGGGCGACGAAA
TGTCTGCTGCTCTCTCAGCAGCACAAACCGAGTATTGGAATTGTTGCCGC
CATCGAAAACGCAAGCATCTATGCAATGTATGTAACTACTCCGCCGCACA
ATTGTAACAAAAGAGGGGGTCCTACAAACTCTCGGCGCCTTCGCCTCTGT
GGATGTAACGTGCTTATTTATTCATGGCATTTTGTGTTACATATGTAAAG
TATTCATCCTGCAACGAGTCGTCAAGCTACGTAAGATAAGCCCCACACCT
GCCCGGCGTTCGTCGGCCCTTCCGACCTGCCGACTCAACAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5009:5361..6201+

>mRNA_L-elsbetiae_contig5009.13017.1 ID=mRNA_L-elsbetiae_contig5009.13017.1|Name=mRNA_L-elsbetiae_contig5009.13017.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig5009:5361..6201+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCCTCCCCCCGCCCCCCCCCATTGCCTCGAATCGGATTTTGATCA
AGAAGAAAATCCCGCTCCCGTGGCCATCAACCGAGGGCAGATAGACGTAT
CCGCCGTTGCGTACCCACGCGTGCACTCCCCGAGCGTGCACTCCCAGATG
CGTCACTGCTGTACTACTGCAGAGTGCGTAAACCTCGAGGAATTAACCGC
CGGCGGCAAAAAAATTACGGAACAGCAACTGACCCTCGAGGGGGGGGGGG
GGGGAAGAACGAAGCCTGAAGGACCGAGCGGGCCAGAGCAGACCGCTTTC
CGGAAACTTTCCGGAAACTTCCGCGCAGCGGGTTGCTTGCTGCTTGCTCT
CCTCGTTCGCCCCTTCCTGCAAGGGCGACGAAATGTCTGCTGCTCTCTCA
GCAGCACAAACCGAGTATTGGAATTGTTGCCGCCATCGAAAACGCAAGCA
TCTATGCAATGTATGTAAATGGTGCCTCCCCCCGCCCCCCCCCATTGCCT
CGAATCGGATTTTGATCAAGAAGAAAATCCCGCTCCCGTGGCCATCAACC
GAGGGCAGATAGACGTATCCGCCGTTGCGTACCCACGCGTGCACTCCCCG
AGCGTGCACTCCCAGATGCGTCACTGCTGTACTACTGCAGAGTGCGTAAA
CCTCGAGGAATTAACCGCCGGCGGCAAAAAAATTACGGAACAGCAACTGA
CCCTCGAGGGGGGGGGGGGGGGAAGAACGAAGCCTGAAGGACCGAGCGGG
CCAGAGCAGACCGCTTTCCGGAAACTTTCCGGAAACTTCCGCGCAGCGGG
TTGCTTGCTGCTTGCTCTCCTCGTTCGCCCCTTCCTGCAAGGGCGACGAA
ATGTCTGCTGCTCTCTCAGCAGCACAAACCGAGTATTGGAATTGTTGCCG
CCATCGAAAACGCAAGCATCTATGCAATGTATGTAA
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