mRNA_L-elsbetiae_contig5007.13015.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5007.13015.1
Unique NamemRNA_L-elsbetiae_contig5007.13015.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5007.13015.1 vs. uniprot
Match: D7G2Y5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y5_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 8.830e-30
Identity = 67/122 (54.92%), Postives = 82/122 (67.21%), Query Frame = 1 
Query:   88 MLPLRTAAAAALMLSSSVHGQSSSGPFLTCQDLQDAFELTKTQDVELIVDPRQDIVCDTFTTMSMDSNTLTVIPSSEQCEFCSGSVELHEIRFEITGGGKLFWQPRAAFIGTALQDVDGGAV 453
            M+PL   +AAAL+L   V G    G   TCQDL DAF LT +QDV + + P QDI CD+FTTMSM +N+LTV+    Q    SGSV L+E+RFE+T G KL W P A+F GT  QDV+GGAV
Sbjct:    1 MVPLSKISAAALLL---VSGSVCQGQLETCQDLLDAFALTASQDVVVEIQPGQDITCDSFTTMSMSANSLTVMTPDGQ----SGSVGLNEVRFEVTDGAKLLWYPGASFTGTEYQDVNGGAV 115
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BLAST of mRNA_L-elsbetiae_contig5007.13015.1 vs. uniprot
Match: A0A6H5JCE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.010e-16
Identity = 52/118 (44.07%), Postives = 69/118 (58.47%), Query Frame = 1 
Query:  106 AAAAALMLSSSVHGQSSSGPFLTCQDLQDAFELTKTQDVELIVDPRQDIVCDTFTTMSMDSNTLTVIPSSEQCEFCSGSVELHEIRFEITGGGKLFWQPRAAFIGTALQD--VDGGAV 453
            ++ A L++  + HG        TC DL  AFE T+T+DV + + P  DI C+TFT M+M SN+LTV  SSE  +  SGS  L  +R ++T G KLFW+    F G    D  VDGGAV
Sbjct:   88 SSLALLLIPGACHGL-----IETCDDLLAAFEQTQTEDVVVEMHPFADIECETFTNMTMTSNSLTV-SSSENIDNFSGSSSLVNVRLDVTNGAKLFWETNVIFEGDEETDLMVDGGAV 199
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BLAST of mRNA_L-elsbetiae_contig5007.13015.1 vs. uniprot
Match: D7FGT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT1_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 6.160e-16
Identity = 48/96 (50.00%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:  172 TCQDLQDAFELTKTQDVELIVDPRQDIVCDTFTTMSMDSNTLTVIPSSEQCEFCSGSVELHEIRFEITGGGKLFWQPRAAFIGTALQD--VDGGAV 453
            TC+DLQ AF LT+TQDV   + P QDI C+TFT M+M SNTLT + SSE  +   GS  L  +R  +T G +L W+    FIG    +  VDGGAV
Sbjct:   24 TCEDLQAAFNLTQTQDVIDEIHPFQDIECETFTNMTMTSNTLT-LNSSENLDNFFGSSSLTNVRLVVTNGAELIWETHVNFIGDEEVELMVDGGAV 118
[Close]
BLAST of mRNA_L-elsbetiae_contig5007.13015.1 vs. uniprot
Match: D7G1Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q9_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 5.830e-6
Identity = 41/118 (34.75%), Postives = 53/118 (44.92%), Query Frame = 1 
Query:  106 AAAAALMLSSSVHGQSSSGPFLTCQDLQDAFELTKTQDVELIVDPRQDIVCDTFTTMSMDSNTLTVIPSSEQCEFCSGSVELHEIRFEITGGGKLFWQPRAAFIGTALQD--VDGGAV 453
            ++ A L++  + HG        TC DL  AFE T+T+DV + + P  DI CDTFT M+M SNTLT                             LFW+    F G    +  VDGGAV
Sbjct:    7 SSLALLLMPGTCHGL-----IETCDDLLAAFEQTQTEDVVVEMHPFADIECDTFTNMTMTSNTLT-----------------------------LFWETNVIFEGDEEAELMVDGGAV 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5007.13015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G2Y5_ECTSI8.830e-3054.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCE5_9PHAE2.010e-1644.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGT1_ECTSI6.160e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1Q9_ECTSI5.830e-634.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5007contigL-elsbetiae_contig5007:7686..12945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size473
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816504.5668707-CDS-L-elsbetiae_contig5007:7685..80551622816504.5668707-CDS-L-elsbetiae_contig5007:7685..8055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5007 7686..8055 -
1691683607.776737-CDS-L-elsbetiae_contig5007:7685..80551691683607.776737-CDS-L-elsbetiae_contig5007:7685..8055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5007 7686..8055 -
1622816504.5776849-CDS-L-elsbetiae_contig5007:12844..129451622816504.5776849-CDS-L-elsbetiae_contig5007:12844..12945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5007 12845..12945 -
1691683607.7858307-CDS-L-elsbetiae_contig5007:12844..129451691683607.7858307-CDS-L-elsbetiae_contig5007:12844..12945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5007 12845..12945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5007.13015.1prot_L-elsbetiae_contig5007.13015.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5007 7686..12945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5007.13015.1

>prot_L-elsbetiae_contig5007.13015.1 ID=prot_L-elsbetiae_contig5007.13015.1|Name=mRNA_L-elsbetiae_contig5007.13015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
TINPLSHRRRHQGQASLPTEKAHKNPDLKMLPLRTAAAAALMLSSSVHGQ
SSSGPFLTCQDLQDAFELTKTQDVELIVDPRQDIVCDTFTTMSMDSNTLT
VIPSSEQCEFCSGSVELHEIRFEITGGGKLFWQPRAAFIGTALQDVDGGA
VRFFVY*
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mRNA from alignment at L-elsbetiae_contig5007:7686..12945-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5007.13015.1 ID=mRNA_L-elsbetiae_contig5007.13015.1|Name=mRNA_L-elsbetiae_contig5007.13015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5260bp|location=Sequence derived from alignment at L-elsbetiae_contig5007:7686..12945- (Laminarionema elsbetiae ELsaHSoW15)
ACAATCAATCCTCTCTCCCACCGCCGAAGACACCAGGGCCAGGCCTCCTT
GCCGACAGAGAAAGCTCACAAGAATCCCGATCTCAAGATGCTTCCTCTCC
GGTGAGGAATATTGATGCAGGTTATTCGTCGGGGCTGTTCCTCCACACAA
GCGAGCGCAGAGAGCGAGAGCGTAGGAGAGGCATGTGATCCTCTCTCGGC
CCTCCCTCCCCCCCGCCTACGCGCGCAAGCAATGAGTAGGGTATCCCCCG
CCAGCAGGCACGACACTTGCGGTTTACTTGGGTGTGACTCAGGAGTAGAT
CGCATGCATGCCTCAGATACCCTCACTGCCTCATCTGTCTGCTCGCTGGA
TCTCGCAAATCGAAATTTGCTGTGCCAAAAGGTTTCTTCGCCGTCCGGCC
GCACGTCGCTTAATATCTCATTTTGTTCATGTTCGCCCCCTCTCTCTTCT
TTCTGTTCTGCATATGACCTACTATTTACTCTTCTTTGTGCCCACAGCCG
CCCTTGGTATACATATATATATATCTAGCTGGCTTCGAAAACAGGCCAGC
AAGCCAGTGTATGTATGTATGTGAAACCGTAGTCTTATTTGCAGGCGGAT
TCTGAAGTATATCATAGACTACAGCGGGGTATGTACTCCGTACATATGTA
CGCAGCCGCAGAGATGTTGGAGAATGACCTCACTGTGCTAACCCCCTAGA
CTATTCATTAGACCCAATGATATGCAGCAGTAGTTGGTTCGACTGATTTT
TGTACGATAAGGTGTTGTCAGGCTTACTCAGAGAACACCCCCCGTCCAGA
ACTCTACTACAGTAAAATTAAGTGAGTGCGGGAGAACATGTGCTTCCGGT
GTTGAAACTCTTGAAGTTTCAGACGAGGGAAGGGGAATCAGCAGGATAGG
GAAGAGATAGATAAGACAGCAGAGAGTCAATGCGAGACTGGTGCAAAATA
CTCGTAACCGGTGGCGTCGTCTCATGCTTCGCTCAGAGCAGAGTTACCCC
GAAAAAAACATCGAAACCAGTTAGATATTCGTCGTTTGTTTTCCATTTAT
TTCTGGCTGGTCACCTTGGGTTGGCGACATGACGCGGTATGGCCCACGTC
CTGAGCATGTGGGACAAGCCACTTGGCTATTAATCTGGGTGGTATTTCCC
ACGCCATATGTCGTTTTGTAGACTATGTAGATAGCTCATATCTAGAAGAT
CTACATCAAGATCTACAACACAGAACATCATCAGATCCACCCGGGGTGAT
ATTGTTGTATTTACGTACGTACATAGTCTATGGTGCAGATTGGTATGCAC
ATACTAGACAGACAGATCAAAATCCGGTGATCACACCGGTGGCCAAAGGG
GGTACGTTGTGTCGGGCAGGTTGAACAAACTCCGGCAACCCGAAAAAAAT
GTGACTGGCACAACGTCAAGCAACGTCAAGCTGTGGTCAACCTCACCCGG
CACAAGGTCTCAGCTTGGGCATTGCTCCCGTCTCAACGTCCCAGGTTGTG
GCATAGATGTAGCTAGATAACTAGGGGTCTGAAGAAAAGCGAAAATGCGA
AAAAAAAGTATTTAGCTCTTCCTACACCCTCACCTTCCCGGTGCCTCAAA
TGCCCACTTTTTGTTCTTATAAGTTTTTCAAACAAACGCACAAGGAGAGA
TACGAATTGGCATTTGTTACTCCACAAACCCAACGCCTTACCTCTGTCCT
ATCCACCCGACCCACTTACGTTAGGCTTCGCGTTCACATCGGCATCCTTA
TGAAATACTCTCACCTGCCTGGTACATGGTATTTTTATTTTTGAAAGATA
AAACAGTTCACCAAAAATGGAACCTAACCCCACCGGTGGCCAAAGGGGTA
CGTTGTGTCGAGCAGGTTGACAAACTCCGGCAAACCGAAAAAAATGTGAC
TGGCACAACGTCAAGCACGTCAAGCTGTTGTCAACCTCACCCGGCACAAG
TCTCAGCTTGGGCATTGCTCCCGTCTCAACGTCCCAGGTTGTGGCATAAT
GTCTAGATAATAGGGGTCTGAAGAAAGGCGAAAATGCGAAAAAAAAAGTA
TTTAGCTCTTCCTACACCCTAACGTTCCCGGTGCCTCATGTATGTGCCCA
CTTTTTCATTTTCCAAGTTTTTCAAACGCACAGAGAGAGATTGGAACTGG
CATTTGTTACTCCACAACCGAACGCCTTACCTCTGTCCTGTCCGCCCGAC
CCACTTACGTTAGGCTTCGCGCTCACATATTATCGGCATCCTTATGAAAT
ACTCTCACCTGCCTGGTACATGGTATTTTTTTATTTTTATTTTTTTTGTC
TCTAACTCCAGTCGTCTACCCTTTGTGAGGGCACACACATTTTTGAAAGA
TGAAACAGTTCACCAAAAATGAAATCTAACCCTCATTGATAGAGGCCCAT
GTTTATGGGGAAAAAATCTTGAAAGTAGTAACAATCTTGGTGTATATTTC
AAAACCTTTGTGGCCACGTTTCCTCGCCAAGAGCTCGGAATCAGATTTCC
GCTTCTCAGGAACAGTCGAAGCTCTCGTCCAGACCTCTATAGATGAACTG
TCTAATCTAGCACACTCCAGGTTTGATTTTCGGCTTCCGGAACAAGATTT
GACAAGATCCAGCCAAGAGGCCGTGTTGCGCAAATCTTCGGCCAACATTT
GCGAGAACGCTGTTTTTTGGCCAAATGTTGATAAAAATTGGTCCACGGCC
AAAAATCAAACTTGTAGTGTGCCAGATTAGACAGTTGATCTGTAGAGGCC
TTCGGACGAGAGCGCCGACTGTTCCTGAGAAGCAGAAATTTGATTCCGAG
CTCGTGGCAAGGAAAAGAGGCCTCAAAGGCCAAAATACACAAGATTTTTG
TACAAAACATTTGTTTTCCCACAAACATGGGTCTGAGAAGCGAAAATCTG
ATTCCGAGCTCGTGGCGAAGTTGAAGATTTGTGTTGTCAAGATTTTTTTC
CCATAAACATTTAGGCGTGAGACATTTTTATTTTTATTGCCCTCCCGTCA
AATAATTGCAGATAGTAGCTAGATCCAGCCGAGCTTCACAATTCTTTTTG
TGCGCGTAAGTGAGCATCCAGCGTTCATCCCTTGTCTAGGAATACCGCAC
GGACGGGTGAGTGATACGTCTCGCTCCTACGATGTCAACCAAGTAAGATG
GACACCAACTTGCTACGTCTCGCTCCTGCGTGTCCCGGCCGGCCTGGTTT
ATATGTTGTACAACCGCGGCGACGGAGGGCGTATGGGAATCATTGGCGCG
AGGGGGGGGGGGGGCAATCCTATCATCTGCATTTTGCTGAGGGCCCTGAT
GGCTGCTAACGTTTCCATAAAGAGATGTTTGACAAGATTAACTATTTCCC
TCGGAGGCGTTGACGGGGACTGGTCGGCGGTGGGTGCGGAGCTGTAAACC
ATCGAGATTTTGATTCAACCATCAATAGATATCCGCGTGTTTCGAATGAA
GGCTTCACATAGCCACGCACATATTTCAATGGTTCAGTTCACGTGTGGTA
GATATGCACCAGATCAGATGAGCAGAGACAAGAGAGTTATCTATGTAGTA
TAAACTAGTTCATCTTGGTGCATGACGCAGGTACATATTACATTATACGT
ACGTGCAGGTTCATAGGCTTTCTGCAATAGAGCCCCCATTTTTCAAAAAG
AGCTGTGGGGGCAGCGGGGGGGTATTTATCTAGGAAATAGAGTGAAAAAT
CCCCCACAGTGCCATTTTTCAGAACTGGGGGCCCTGCTGCTGGAAGCCTA
TACCATAATAGAACTAAGGTCAGGAGTGCTCGTAGTGAAATGAAAGGTCC
ACGCAGCACGACTTAGGTGCACTACTAAGCAAGTACTTTACTCAGCCTGT
GGCGAACGGAACGACCGCATCATATGTTGTGTGTTGGAATAGTACGCCCA
TAGGGAGGTACTGGGTGGAGAGATCGGAACGATTTTTGTCTGAAGAAACA
ACAACAATAACGCGTTGTATGAGTACAGGCAGAGAGAAATACTGGTAGGG
ACAGATCGGGAGGGTGTCAAGGCGATGAAACAAATAAGGAGTCTTTGCCG
TGCTCGCCATTCTGTGCGATGGCAGAATGGGCAATTTGCGCTGAACTTGA
GATCGTAACATATGCCGTGTCACGCAACGGGATGCGCCAGAGAGGGTCTT
TGATACTTACTTGCGTCTTGTCCCTACAACATTCTACTGGCAGCTACTTC
ACGCGCAGAAACGCTACATATGCTGTGTGCAAATCTATGGCTCGCTGTTG
AAATATTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTCTCA
CACATTACCTCTCTAGTCCAAAAACATCCATGGGGGCCCGTGGTCACAAA
AACAAGGCACAGTCGACCCCGCTGAAGAAAACAATAAGACAAAACCATGA
TACATATACCTACGCGCCAGGCAATACTAAACTGACTTCCGAGGGGTCTT
GCGTCTCGCTGGCAAAAAATAAAAAAAGGTACATGCCACTGGGAAGAAAA
AACAAAAGAAAGCTAGAAAGGCCAGATAATAGCACGCCAGGTAGGGGAAA
GGGAGCTTCCCACACCCGCCTTTATTGCCGGAGGATTTCGTGTCGGGTTC
TCGTGTGTATGATCTATTGCTTGTGTTGGATTATTGCTTGTTTTTTCCCG
GGGCTGCGTCGTCCGTGTCCCCCTCTAAAAAACGTGACAACTACCCGTTC
TAGCACGGCCATCTGTAGCCCTCAGGCTCCGAAAGGAGGCTGCTGATTGA
TGACGAACGCCGGCAATGCATCCGGTTTTGTGCGAAAAACCCAAATAAAT
GAACCCAGATCGCATTCCGCCCCTTTCCCGTGTCATGCAGGACGGCTGCT
GCAGCCGCTCTCATGCTCTCCAGCAGCGTTCACGGGCAGTCTAGCAGCGG
GCCGTTCCTAACCTGCCAAGACCTCCAGGACGCCTTCGAGCTCACCAAGA
CGCAGGACGTCGAGCTCATCGTCGACCCTCGCCAAGACATCGTGTGCGAC
ACCTTTACGACCATGAGCATGGACTCCAACACCCTCACCGTGATCCCGTC
GTCCGAGCAATGCGAGTTCTGCAGCGGCAGCGTCGAGCTCCACGAGATCC
GCTTCGAGATCACGGGCGGGGGGAAGCTGTTCTGGCAGCCTAGGGCCGCG
TTCATCGGGACGGCACTGCAGGATGTTGATGGGGGCGCGGTGCGTTTTTT
TGTCTACTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5007:7686..12945-

>mRNA_L-elsbetiae_contig5007.13015.1 ID=mRNA_L-elsbetiae_contig5007.13015.1|Name=mRNA_L-elsbetiae_contig5007.13015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig5007:7686..12945- (Laminarionema elsbetiae ELsaHSoW15)
ACAATCAATCCTCTCTCCCACCGCCGAAGACACCAGGGCCAGGCCTCCTT
GCCGACAGAGAAAGCTCACAAGAATCCCGATCTCAAGATGCTTCCTCTCC
GACAATCAATCCTCTCTCCCACCGCCGAAGACACCAGGGCCAGGCCTCCT
TGCCGACAGAGAAAGCTCACAAGAATCCCGATCTCAAGATGCTTCCTCTC
CGGACGGCTGCTGCAGCCGCTCTCATGCTCTCCAGCAGCGTTCACGGGCA
GTCTAGCAGCGGGCCGTTCCTAACCTGCCAAGACCTCCAGGACGCCTTCG
AGCTCACCAAGACGCAGGACGTCGAGCTCATCGTCGACCCTCGCCAAGAC
ATCGTGTGCGACACCTTTACGACCATGAGCATGGACTCCAACACCCTCAC
CGTGATCCCGTCGTCCGAGCAATGCGAGTTCTGCAGCGGCAGCGTCGAGC
TCCACGAGATCCGCTTCGAGATCACGGGCGGGGGGAAGCTGTTCTGGCAG
CCTAGGGCCGCGTTCATCGGGACGGCACTGCAGGATGTTGATGGGGGCGC
GGTGCGTTTTTTTGTCTACTGAGACGGCTGCTGCAGCCGCTCTCATGCTC
TCCAGCAGCGTTCACGGGCAGTCTAGCAGCGGGCCGTTCCTAACCTGCCA
AGACCTCCAGGACGCCTTCGAGCTCACCAAGACGCAGGACGTCGAGCTCA
TCGTCGACCCTCGCCAAGACATCGTGTGCGACACCTTTACGACCATGAGC
ATGGACTCCAACACCCTCACCGTGATCCCGTCGTCCGAGCAATGCGAGTT
CTGCAGCGGCAGCGTCGAGCTCCACGAGATCCGCTTCGAGATCACGGGCG
GGGGGAAGCTGTTCTGGCAGCCTAGGGCCGCGTTCATCGGGACGGCACTG
CAGGATGTTGATGGGGGCGCGGTGCGTTTTTTTGTCTACTGA
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