mRNA_L-elsbetiae_contig5004.13010.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5004.13010.1
Unique NamemRNA_L-elsbetiae_contig5004.13010.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5004.13010.1 vs. uniprot
Match: D8LRK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK1_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.790e-24
Identity = 68/130 (52.31%), Postives = 81/130 (62.31%), Query Frame = 1 
Query: 1096 YLSQLPPEAKQRWLHRGWFVMLRVRHQIYLAQ-QHSVSQMSRVWLCRRNARDPRGIT-LAKMDDPLVTAGGERSAGTQGVIGIELCEEGNSNQETARLIEGNPNSEFARAVVSVIGIIEEGLFRHIVLYL 1479
            +LS  P   ++RW  RGW VMLR RHQI+LAQ Q + SQ    WLC+R  RD  GIT +   DDPL TAG E S G QG+  IEL E+G  +QE            FA+AVVSV GI+EEG+FR I LYL
Sbjct:  134 HLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQP---WLCKRKLRDLCGITRVMTADDPLATAGNEPSVGAQGIADIELNEQGTYDQE------------FAQAVVSVAGIMEEGIFRGITLYL 248
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5004.13010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRK1_ECTSI1.790e-2452.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5004contigL-elsbetiae_contig5004:2926..5703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_000100.1
Exons4
Model size1994
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5004.13010.1prot_L-elsbetiae_contig5004.13010.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5004 3769..5191 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816503.7686584-UTR-L-elsbetiae_contig5004:2925..37681622816503.7686584-UTR-L-elsbetiae_contig5004:2925..3768Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5004 2926..3768 +
1691683607.242108-UTR-L-elsbetiae_contig5004:2925..37681691683607.242108-UTR-L-elsbetiae_contig5004:2925..3768Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5004 2926..3768 +
1622816503.835237-UTR-L-elsbetiae_contig5004:5191..57031622816503.835237-UTR-L-elsbetiae_contig5004:5191..5703Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5004 5192..5703 +
1691683607.2970424-UTR-L-elsbetiae_contig5004:5191..57031691683607.2970424-UTR-L-elsbetiae_contig5004:5191..5703Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5004 5192..5703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816503.7830467-CDS-L-elsbetiae_contig5004:3768..38241622816503.7830467-CDS-L-elsbetiae_contig5004:3768..3824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5004 3769..3824 +
1691683607.2515647-CDS-L-elsbetiae_contig5004:3768..38241691683607.2515647-CDS-L-elsbetiae_contig5004:3768..3824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5004 3769..3824 +
1622816503.7980578-CDS-L-elsbetiae_contig5004:4087..41391622816503.7980578-CDS-L-elsbetiae_contig5004:4087..4139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5004 4088..4139 +
1691683607.2671456-CDS-L-elsbetiae_contig5004:4087..41391691683607.2671456-CDS-L-elsbetiae_contig5004:4087..4139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5004 4088..4139 +
1622816503.8097072-CDS-L-elsbetiae_contig5004:4483..45801622816503.8097072-CDS-L-elsbetiae_contig5004:4483..4580Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5004 4484..4580 +
1691683607.2770424-CDS-L-elsbetiae_contig5004:4483..45801691683607.2770424-CDS-L-elsbetiae_contig5004:4483..4580Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5004 4484..4580 +
1622816503.823879-CDS-L-elsbetiae_contig5004:4757..51911622816503.823879-CDS-L-elsbetiae_contig5004:4757..5191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5004 4758..5191 +
1691683607.2869601-CDS-L-elsbetiae_contig5004:4757..51911691683607.2869601-CDS-L-elsbetiae_contig5004:4757..5191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5004 4758..5191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5004.13010.1

>prot_L-elsbetiae_contig5004.13010.1 ID=prot_L-elsbetiae_contig5004.13010.1|Name=mRNA_L-elsbetiae_contig5004.13010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=213bp
MPNLRTTGSTVKFLRAQPRYLSFGSYSSCIVKSILLVVIPISIALVCALF
WPVVLFICCIRTCSHCIKARQKMAALRRRDEAISYLSQLPPEAKQRWLHR
GWFVMLRVRHQIYLAQQHSVSQMSRVWLCRRNARDPRGITLAKMDDPLVT
AGGERSAGTQGVIGIELCEEGNSNQETARLIEGNPNSEFARAVVSVIGII
EEGLFRHIVLYL*
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mRNA from alignment at L-elsbetiae_contig5004:2926..5703+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5004.13010.1 ID=mRNA_L-elsbetiae_contig5004.13010.1|Name=mRNA_L-elsbetiae_contig5004.13010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2778bp|location=Sequence derived from alignment at L-elsbetiae_contig5004:2926..5703+ (Laminarionema elsbetiae ELsaHSoW15)
CATGTCGGAGAACTTCGGAGGAAACGAGTGCTGTGATGCGGAAGATGATT
CCGGAGTGGACTGGGGATTATATGTGGTAGGCTGGAAATTTCTGTTTGTT
GCGTTACATGTGTTTACCAGATAACTTTGTCTAAGAGCTGCTGTAATTAT
CTGGTAATTATTGAAAAAGTATATCCGAGCACACTTCCAGCAACACAACT
TGTAACTCGAAAAACATAACACAGCCTACGCATGACCTTGGCCGTGTCTA
TTTGCGTTTCGCCGCCCGCTACAATATTGCTGCACAACAGTACACAGCAG
TAGTAGATGATGACAATCGTGTTGTCGTTTTTATCTTGGGTTGAAGGTTA
CACGAGCCTCTCTCTTATTTTTGCTCTCGAGACTCTACTCACATCCTGCG
GAAGAATGGACAGTCAAGTTACCGCAGAATAGAGATGCGTATACGGACAT
CCATATCTAGCATTTATCGGGAGTCTTTTTTGCGGAAAAAATAGCACGAT
ATGTAGACAAATGCGGAAGGTGGTGGGCGCCTGTTGTCGCATGATTTCGT
GTGCGACTGTGTTCAAACACGCAGGCCCTCGTCTCCCGCTCTGTACATAC
ATATCTCTCGCCACGAGAAAGGCTAAGAATACTGGTCGATAACCACTCAA
CTCCTGTGCTCTTGTTTGGCATTGGTGCTACCCCAGCTCATCTACTGCAT
TGTCGCTGGGGATTTCGGCGTCGTCGGGTGGGTTTTGGCCTGCATGTGAG
CGCCTGCAGCAGCGTAGATCATGTCAGCATTTATGTAAGCCAAGTGTCGG
CGAGGAAGCCAACACAGCTCGTGAAATCCTCAAAAGATGTACGATGCCTA
ATCTACGCACGACTGGTTCTACGGTCAAGTTCTTACGGGCTCAACCTAGG
TACCACGGGAAATTCGGTGGTTGAGCTGTTGCGTAGTACTATTAGTGGCT
CGTTGCGTGCGTGAGGCGAGGAACCATCAGTCGGCGATGATGTACCTCTT
GGGTTGAATTAGTCGGTTGGTTATGTTTAGTAAAGGGCCCGTTCTGTTCG
ACCATGTGTACCAAGCCACAGGCAGGCGCGTTATTGTAGAAGCTTCGACA
CGCGTATGACGAAACGCGCCTCTGAAACCATACCTTTGCCGCCGTCGCCG
CTTTTTTTGCAGGTACTTGTCGTTTGGTTCGTACAGCAGCTGCATCGTGA
AGTCAATTTTGTTGGTAAGGGCATGTGTGCAGCTAGAAGTGAGGTGTTCT
GGATTCTTCGCAGATACAGTGGACAATTTCATCACTGCAAATGGAAGAAC
ACGGGCGAATTCTCCATGCGACCGGCCCTGAATTGTCGGTTCAGTTTGAT
GGAACTAGTTGGCCCGAGACTACTCAGTCAGTCATGATTTATTGTTTTTG
TTTTCTCCGTTTGCGCACGGCTAATCTGGCATGGTAGGAGCTTACGTCAA
GCACGGTCTCTGTAGTACGTCTCGTGAATTATCTCGACCTTGTATCTACC
GACCCCCTGAATCTTACGCTTTATCCACCGTGCCCCTGCCTATTTTTCGG
CTCTTCAGGTTGTCATCCCAATCTCGATCGCTCTAGTGTGTGCACTCTTC
TGGCCAGTGGTACTATTTATTTGCTGCATACGCACCTGTTCACATTGCAT
CAAAGGTAAGCTATGAGTGGCATACGACTGAACATGCAACGTTCGCCCAC
CCTTCTTCCTCGCTGTTCCGATATGCATGGTGCCACGGACTCGGACGTGG
GGTTAATCGATAAAGCAACCCTCATTCCCTACCTTTACCAAATTTTCGCC
CCCTGCTGTGCATGCTCTGTCTGTATATTTAGCGAGACAGAAGATGGCCG
CCCTTCGACGACGAGACGAGGCGATTTCCTACCTCTCCCAGCTCCCACCT
GAGGCCAAGCAGCGCTGGCTCCATCGGGGATGGTTTGTGATGCTACGAGT
ACGTCACCAAATCTACTTGGCACAGCAACATTCGGTTTCTCAGATGTCGA
GGGTGTGGCTTTGCAGGCGGAACGCGAGAGATCCGCGTGGTATAACACTG
GCGAAGATGGATGACCCACTAGTCACCGCAGGAGGCGAACGTTCTGCAGG
CACGCAAGGGGTTATCGGCATTGAACTGTGCGAGGAAGGCAACTCTAATC
AGGAGACTGCACGTCTCATCGAAGGAAACCCCAACTCGGAGTTTGCACGG
GCCGTGGTTTCGGTCATTGGTATCATAGAGGAAGGACTTTTTCGCCACAT
TGTCTTGTATCTCTAGGATAGGAGTTTTGAACCGGATCGGTTCATCTTAT
AGTCTGTCTCTAGGATTATGATTTTCGATCGGTTTGTCGCGCAGGGAGGA
ACAAATATTTACCAGTGAGGCAGGCTTTATTCCGTTACGCGTGTGCTTTC
TGTTGAATAAACTTAATCGAGTAAAACTCTCTTTTTTCTACTCACCTACC
AGAATTGGGCTTGATCTATCAATCGTTGCGCCATCGGCGCAGATTTGGAT
GCACGCCAAGACTTCGCGGCTTTTTTCGGGTGTGAGCTCGCCACATTTTT
TGTCGCAAATATGTGGTGGTTTATTATTGGTTGTTTGCGCTACTACTGCC
TGAGGACTCCTGCCTGAAGTGTCAGAAGAATCTACACGAACGAAGGATGC
GACAAAATAACCACACGTGTGCTTGGTTGCTCGTAGCAGCACCTCGTATC
CTTTGAAGAGAACATGTGCCCATCGCTCGTTCATTGGTCGGCTTTACATC
GCTAGGAGGACATTGCAAAGGAACGCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5004:2926..5703+

>mRNA_L-elsbetiae_contig5004.13010.1 ID=mRNA_L-elsbetiae_contig5004.13010.1|Name=mRNA_L-elsbetiae_contig5004.13010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1278bp|location=Sequence derived from alignment at L-elsbetiae_contig5004:2926..5703+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTAATCTACGCACGACTGGTTCTACGGTCAAGTTCTTACGGGCTCA
ACCTAGATGCCTAATCTACGCACGACTGGTTCTACGGTCAAGTTCTTACG
GGCTCAACCTAGGTACTTGTCGTTTGGTTCGTACAGCAGCTGCATCGTGA
AGTCAATTTTGTTGGTACTTGTCGTTTGGTTCGTACAGCAGCTGCATCGT
GAAGTCAATTTTGTTGGTTGTCATCCCAATCTCGATCGCTCTAGTGTGTG
CACTCTTCTGGCCAGTGGTACTATTTATTTGCTGCATACGCACCTGTTCA
CATTGCATCAAAGGTTGTCATCCCAATCTCGATCGCTCTAGTGTGTGCAC
TCTTCTGGCCAGTGGTACTATTTATTTGCTGCATACGCACCTGTTCACAT
TGCATCAAAGCGAGACAGAAGATGGCCGCCCTTCGACGACGAGACGAGGC
GATTTCCTACCTCTCCCAGCTCCCACCTGAGGCCAAGCAGCGCTGGCTCC
ATCGGGGATGGTTTGTGATGCTACGAGTACGTCACCAAATCTACTTGGCA
CAGCAACATTCGGTTTCTCAGATGTCGAGGGTGTGGCTTTGCAGGCGGAA
CGCGAGAGATCCGCGTGGTATAACACTGGCGAAGATGGATGACCCACTAG
TCACCGCAGGAGGCGAACGTTCTGCAGGCACGCAAGGGGTTATCGGCATT
GAACTGTGCGAGGAAGGCAACTCTAATCAGGAGACTGCACGTCTCATCGA
AGGAAACCCCAACTCGGAGTTTGCACGGGCCGTGGTTTCGGTCATTGGTA
TCATAGAGGAAGGACTTTTTCGCCACATTGTCTTGTATCTCTAGCGAGAC
AGAAGATGGCCGCCCTTCGACGACGAGACGAGGCGATTTCCTACCTCTCC
CAGCTCCCACCTGAGGCCAAGCAGCGCTGGCTCCATCGGGGATGGTTTGT
GATGCTACGAGTACGTCACCAAATCTACTTGGCACAGCAACATTCGGTTT
CTCAGATGTCGAGGGTGTGGCTTTGCAGGCGGAACGCGAGAGATCCGCGT
GGTATAACACTGGCGAAGATGGATGACCCACTAGTCACCGCAGGAGGCGA
ACGTTCTGCAGGCACGCAAGGGGTTATCGGCATTGAACTGTGCGAGGAAG
GCAACTCTAATCAGGAGACTGCACGTCTCATCGAAGGAAACCCCAACTCG
GAGTTTGCACGGGCCGTGGTTTCGGTCATTGGTATCATAGAGGAAGGACT
TTTTCGCCACATTGTCTTGTATCTCTAG
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