mRNA_L-elsbetiae_contig5003.13008.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5003.13008.1
Unique NamemRNA_L-elsbetiae_contig5003.13008.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5003.13008.1 vs. uniprot
Match: A0A6H5K9R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.630e-11
Identity = 44/62 (70.97%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:  106 SSAELAAVREQVETLKQQLVMVGVQQLALTGVPTGAALLN-RHEG-----AFPFHGPALPAA 273
            SSAEL AV+EQ+E LKQQLVMVGVQQLALTGVPTGAALL+ RH G     A PF  P   AA
Sbjct:  674 SSAELDAVKEQMEVLKQQLVMVGVQQLALTGVPTGAALLSGRHSGRGGGPARPFKDPPAAAA 735
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BLAST of mRNA_L-elsbetiae_contig5003.13008.1 vs. uniprot
Match: D7FS85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS85_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 8.870e-11
Identity = 48/77 (62.34%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:   58 SPEWRRP--EGGGQGDAASSAELAAVREQVETLKQQLVMVGVQQLALTGVPTGAALLN-RHEG------AFPFHGPA 261
            SP+  RP  EG     AA S EL  V+EQ+E LKQQLVMVGVQQLALTGV TGAALLN RH G      A PF+ PA
Sbjct:  570 SPKRVRPCLEGEAVPGAAFSVELDPVKEQMEILKQQLVMVGVQQLALTGVRTGAALLNGRHSGGSGGGPAHPFNDPA 646
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5003.13008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9R0_9PHAE2.630e-1170.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS85_ECTSI8.870e-1162.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5003contigL-elsbetiae_contig5003:6427..8522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size505
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816503.578821-CDS-L-elsbetiae_contig5003:6426..65641622816503.578821-CDS-L-elsbetiae_contig5003:6426..6564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5003 6427..6564 +
1691683607.160558-CDS-L-elsbetiae_contig5003:6426..65641691683607.160558-CDS-L-elsbetiae_contig5003:6426..6564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5003 6427..6564 +
1622816503.5894766-CDS-L-elsbetiae_contig5003:8157..85201622816503.5894766-CDS-L-elsbetiae_contig5003:8157..8520Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5003 8158..8520 +
1691683607.1724613-CDS-L-elsbetiae_contig5003:8157..85201691683607.1724613-CDS-L-elsbetiae_contig5003:8157..8520Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5003 8158..8520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5003.13008.1prot_L-elsbetiae_contig5003.13008.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5003 6427..8520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5003.13008.1

>prot_L-elsbetiae_contig5003.13008.1 ID=prot_L-elsbetiae_contig5003.13008.1|Name=mRNA_L-elsbetiae_contig5003.13008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
AAAAVGAAGGGGNGGGSVASPEWRRPEGGGQGDAASSAELAAVREQVETL
KQQLVMVGVQQLALTGVPTGAALLNRHEGAFPFHGPALPAAGRSAAGDGA
TASMGAEASPLPMRGGGDRSGMMRVQRRQRQQLQQQPPPGRTTQPKRTRR
GRDGACGPHEEEEEEQA
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mRNA from alignment at L-elsbetiae_contig5003:6427..8522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5003.13008.1 ID=mRNA_L-elsbetiae_contig5003.13008.1|Name=mRNA_L-elsbetiae_contig5003.13008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2096bp|location=Sequence derived from alignment at L-elsbetiae_contig5003:6427..8522+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGCTGCCGTTGGTGCTGCTGGTGGCGGCGGTAATGGTGGGGGTTC
CGTTGCGTCACCCGAGTGGCGACGGCCGGAAGGGGGGGGGCAGGGAGATG
CGGCGTCCAGCGCTGAGCTCGCTGCTGTTAGGGAGCAGGTAGGGGCTGGC
CGGTTGGCGTCGGGTATCGGGAGTAGCGGAGGTTGCGCCTTGTCAAATGC
CGCCGAGACTGCTCCTCACTGCTGTGTGGGTAGGGTGGTTAGGTTGTCGC
GTGATCGCGGGGAAAATTTCAGGGTATTCGTCGGGAAATTTCCCGACGTG
TTTTCCCGCCCACGGTAGGCGGATCCGGTACTTGGCGGATTCCCGCCATA
ATTCGCGGTACCGGCAACCGCCGAAGGCGGTACCGCCAAAAAAACGAGTA
CCGCTTCCCGCCGAAAAAATACCGCCATACGTATTTCAAACCGCCCAAAA
AGTACCGGCGAAAAACCAAGTACCGCTTTTCCCGCCGAAAAAATACCGCC
ATATTTCAAACCGCCAAAAAAGTACCGCCATATTTATTGCCAACCGCCAA
AAAAATACCGCCATGTTGCAGACCGCCAAGAAAGTACCGCCATATTGCAT
ACCGCCGAAAAAGCACCGCCTTATGATACATAGTACCGCCAAAAATTCCC
ACCCTGCTCACTCGGCGTGTACATAAATGGGCAACGACCCATGCGGTCAA
CTATGCACCGGGTTCTAAATCCCACAAGGTGATTATTCTCTTTTTTTTTC
GTTCATTTATTTTTCTTTTTTCTGTTTTTTTTTTTTGGCGAGGTTCTTAA
TGTCTTTTTGTTCCTTTTCGGTAGAACCTCTTGTGGTGCTGTAGCGTGGA
CGCGTGGGCGGCACGCACGACGCAGCGCAGAGCGTTTGTGTGTGCTCCGG
CAAAACTAATTAAAACGTGAAATCGTAAATACCACCGAATTGTTTTCCCG
CCTGCGGTTTACCGCCATATTTGGCGGCACCGACATATTAGCGAACCGCC
TCCGAAATTTCCGCCATTCTTGACGGTACCGCCATATTGCGAACCGCCTC
CGAAATTCCCGCCAATATTGGCGGTACAGTACCGCCATATTGCGAACCGT
CGAGAAAATTCCCGCCATTATTCGCGGTACCGCCGAAAAACTAGGTACCG
CTGTACCGCCTAGATTTCCCGCCATCTTGCAGTACCGCCAAAACTGCTCG
CGCCCAAAATATCATTCCCGACGAATACCCTGGGGAAAATTTGGGTGTTC
TCTTGTACACGTTCTTCCGAAAAAACATACCATATGTATGTACCAGTATA
CCCTACTGAAAAGGCGTACATCCTCAAAAAAATGTCTGTTTTGAGATGGG
CATGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGGAGCGCGGTGCGGTCGA
CTGGTATCCTATGTACAATATCCTGCATGGCCGCTCCTTAACTCCTTAAC
ACCCGCTCCATATTTTCGACCCCCCCAAATAATTTTTCGAACCAGATGCT
GACCCCCCCCCCCCCCCCCCCCCCCCCGCCCGGCGCCGCCCCAGTGGGTG
GGACCCCCCAACCACCACCCGCGGGGGGTGGGGGGCAGGGGGGAACCCCC
CNNNNNNNNNNGCCCCGCCCCTCCCCCCTCTACCCCCGCGCCGTACCTTC
CCCCCCCCCCCTACCATTTTCGACCCCCACGGTGTCCCCCCCCCCCCCCC
CGCGCGCGCGCGCGCGCGTGCGCCCTGTTAGGTGGAAACGCTCAAACAAC
AACTGGTGATGGTCGGAGTGCAGCAGCTAGCCCTCACAGGCGTGCCTACC
GGAGCCGCCCTCCTAAACCGGCACGAAGGCGCTTTCCCCTTCCATGGTCC
AGCTCTTCCTGCGGCTGGCCGCTCCGCTGCCGGTGACGGCGCGACTGCAA
GTATGGGTGCGGAGGCGTCACCTCTGCCGATGCGGGGGGGTGGGGATCGC
TCTGGAATGATGCGCGTACAGCGGCGGCAGCGGCAACAGCTGCAGCAGCA
GCCGCCGCCAGGGAGAACGACGCAACCAAAACGCACACGGCGAGGGAGGG
ACGGCGCCTGCGGTCCACATGAAGAAGAAGAAGAAGAGCAAGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5003:6427..8522+

>mRNA_L-elsbetiae_contig5003.13008.1 ID=mRNA_L-elsbetiae_contig5003.13008.1|Name=mRNA_L-elsbetiae_contig5003.13008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig5003:6427..8522+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGCTGCCGTTGGTGCTGCTGGTGGCGGCGGTAATGGTGGGGGTTC
CGTTGCGTCACCCGAGTGGCGACGGCCGGAAGGGGGGGGGCAGGGAGATG
CGGCGTCCAGCGCTGAGCTCGCTGCTGTTAGGGAGCAGGCCGCCGCTGCC
GTTGGTGCTGCTGGTGGCGGCGGTAATGGTGGGGGTTCCGTTGCGTCACC
CGAGTGGCGACGGCCGGAAGGGGGGGGGCAGGGAGATGCGGCGTCCAGCG
CTGAGCTCGCTGCTGTTAGGGAGCAGGTGGAAACGCTCAAACAACAACTG
GTGATGGTCGGAGTGCAGCAGCTAGCCCTCACAGGCGTGCCTACCGGAGC
CGCCCTCCTAAACCGGCACGAAGGCGCTTTCCCCTTCCATGGTCCAGCTC
TTCCTGCGGCTGGCCGCTCCGCTGCCGGTGACGGCGCGACTGCAAGTATG
GGTGCGGAGGCGTCACCTCTGCCGATGCGGGGGGGTGGGGATCGCTCTGG
AATGATGCGCGTACAGCGGCGGCAGCGGCAACAGCTGCAGCAGCAGCCGC
CGCCAGGGAGAACGACGCAACCAAAACGCACACGGCGAGGGAGGGACGGC
GCCTGCGGTCCACATGAAGAAGAAGAAGAAGAGCAAGCGGTGGAAACGCT
CAAACAACAACTGGTGATGGTCGGAGTGCAGCAGCTAGCCCTCACAGGCG
TGCCTACCGGAGCCGCCCTCCTAAACCGGCACGAAGGCGCTTTCCCCTTC
CATGGTCCAGCTCTTCCTGCGGCTGGCCGCTCCGCTGCCGGTGACGGCGC
GACTGCAAGTATGGGTGCGGAGGCGTCACCTCTGCCGATGCGGGGGGGTG
GGGATCGCTCTGGAATGATGCGCGTACAGCGGCGGCAGCGGCAACAGCTG
CAGCAGCAGCCGCCGCCAGGGAGAACGACGCAACCAAAACGCACACGGCG
AGGGAGGGACGGCGCCTGCGGTCCACATGAAGAAGAAGAAGAAGAGCAAG
CG
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