Homology
BLAST of mRNA_L-elsbetiae_contig5003.13007.1 vs. uniprot
Match:
D7FS85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS85_ECTSI)
HSP 1 Score: 166 bits (420), Expect = 9.190e-42
Identity = 154/312 (49.36%), Postives = 178/312 (57.05%), Query Frame = 1
Query: 1 DAESLLARLAGKAKQAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVA-TGSLADVA-----GGPGDYAGAAVGSSETGEG-------GGGGRREPGLAAVEAG---GGRARLAELCKEDKAKVARLMQDLVKLRAEKDGQGARFERLRAQNESIVKEMAALKVKFGQSMQLLRKYQSIMQEGGPAAGRRPGVGGPDGAQGAGS-----RSVESLSXXXXXXXX-----DTKALREALRVAEEASRAXXXXXXXEHAGRVAMAEELRRAKEQADDLRRQLNHRVRA-GKPLLVAAPEDDARPGLDSLGG 855
DAE+LLARLAGKAKQAAA A A S+ D G + GAA+ TGE GR+ P +AA G G ARLAELCKEDK KVARLMQDLVKLR EK+GQ RFERLRAQNESIVK+MA LK KFGQSMQLLRKYQSI+QEGG A GG G +G G + +E XXXXXXXX + +ALRE LR+AEE++R + +GR AMAEELR+A+ QAD+LRRQL+H R + VAA E R L LGG
Sbjct: 123 DAEALLARLAGKAKQAAAVALSASAASGGMTPDLTARSAPTGTVTRNVKSAGVESITDATVRVRFSGDKGHLGAAIKRGTTGEDCRDESTVTAVGRQVPEVAAAAGGVAVDGGARLAELCKEDKTKVARLMQDLVKLRQEKEGQKTRFERLRAQNESIVKQMAGLKDKFGQSMQLLRKYQSIVQEGGAAD-----EGGGVGVRGKGXXXXXXKRLEKXXXXXXXXXXXXXXAEIQALRETLRLAEESTRKAEAEAAAQRSGRTAMAEELRQARGQADELRRQLDHHRRLQARDSPVAAREGPRRNDLGLLGG 429
BLAST of mRNA_L-elsbetiae_contig5003.13007.1 vs. uniprot
Match:
A0A6H5K9R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R0_9PHAE)
HSP 1 Score: 161 bits (408), Expect = 3.740e-40
Identity = 137/280 (48.93%), Postives = 157/280 (56.07%), Query Frame = 1
Query: 1 DAESLLARLAGKAKQAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVA-TGSLADVA-----GGPGDYAGAAVGSSETGE-------GGGGGRREPGLAAVEAG---GGRARLAELCKEDKAKVARLMQDLVKLRAEKDGQGARFERLRAQNESIVKEMAALKVKFGQSMQLLRKYQSIMQEGG-PAAGRRPGVGGPDGAQGAGSRSVESLSXXXXXXXXDTKALREALRVAE-EASRAXXXXXXXEHAGRVAMAEELRRAKEQADDLRRQLNHRVR 786
DAE+LLARLAGKAKQAAA A A S+ D A G + GAA+ S TGE GR+ P +AA G G ARLAELC+EDK KVARLMQDLVKLR EK+GQ RFERLRAQNESIVKEMA LKVKFGQSMQLLRKYQSI+QEGG P G GV G GA R +E + +ALRE E++R + + R AMAEELR+A+ QAD+LRRQL+H R
Sbjct: 212 DAEALLARLAGKAKQAAAVALSASAASGGMTPDPTARAAPTGIVTRNVKSAGVESITDAAVRVRFSGDTGHVGAAIRRSTTGEECRDESMATAVGRQVPEVAAAAGGVAIDGGARLAELCQEDKTKVARLMQDLVKLRQEKEGQKTRFERLRAQNESIVKEMAGLKVKFGQSMQLLRKYQSIVQEGGAPGGGXXVGVRGKXXXXGACKR-LEKQEAAATAAAAEIQALREXPSAKRRESARKAEAEAAVQRSDRTAMAEELRQARGQADELRRQLDHHRR 490
BLAST of mRNA_L-elsbetiae_contig5003.13007.1 vs. uniprot
Match:
A0A835Z7B7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B7_9STRA)
HSP 1 Score: 62.0 bits (149), Expect = 6.670e-7
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 286 GRARLAELCKEDKAKVARLMQDLVKLRAEKDGQGARFERLRAQNESIVKEMAALKVKFGQSMQLLRKYQ---SIMQE 507
G ARL +LC DKAKVA+LMQ+L +AE + R ERLRAQN IV E A + + Q++ LL+KYQ S++Q+
Sbjct: 42 GEARLVDLCPSDKAKVAKLMQELSAAQAEAAARAHRLERLRAQNAEIVAETADTRSRLTQAVLLLKKYQARASLLQQ 118
BLAST of mRNA_L-elsbetiae_contig5003.13007.1 vs. uniprot
Match:
A0A7S2SSJ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSJ5_9STRA)
HSP 1 Score: 55.8 bits (133), Expect = 5.860e-5
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 292 ARLAELCKEDKAKVARLMQDLVKLRAEKDGQ-----------GARFERLRAQNESIVKEMAALKVKFGQSMQLLRKYQ 492
ARL +LC DK++VARL+ L+++ E D +R +RLR QN+ IV EMAAL+ KFGQ++ L ++YQ
Sbjct: 56 ARLTDLCAADKSRVARLIDQLLRVTTEHDKAVEDWGRERATFESRIQRLRKQNDEIVGEMAALRKKFGQTLTLAQQYQ 133
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5003.13007.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 9.19e-42 / Id = 49.36 Expect = 3.74e-40 / Id = 48.93 Expect = 6.67e-7 / Id = 49.35 Expect = 5.86e-5 / Id = 43.59 Sequence D7FS85_ECTSI A0A6H5K9R0_9PHAE A0A835Z7B7_9STRA A0A7S2SSJ5_9STRA
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Ec32 ortholog description expressed unknown protein
Ec32 ortholog Ec-05_004990.1
Exons 4
Model size 1084
Cds size 1080
Stop 0
Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816503.6986463-CDS-L-elsbetiae_contig5003:3905..4397 1622816503.6986463-CDS-L-elsbetiae_contig5003:3905..4397 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5003 3906..4397 +
1691683607.201047-CDS-L-elsbetiae_contig5003:3905..4397 1691683607.201047-CDS-L-elsbetiae_contig5003:3905..4397 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5003 3906..4397 +
1622816503.7111797-CDS-L-elsbetiae_contig5003:5003..5171 1622816503.7111797-CDS-L-elsbetiae_contig5003:5003..5171 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5003 5004..5171 +
1691683607.2128234-CDS-L-elsbetiae_contig5003:5003..5171 1691683607.2128234-CDS-L-elsbetiae_contig5003:5003..5171 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5003 5004..5171 +
1622816503.7243617-CDS-L-elsbetiae_contig5003:5693..5786 1622816503.7243617-CDS-L-elsbetiae_contig5003:5693..5786 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5003 5694..5786 +
1691683607.2234256-CDS-L-elsbetiae_contig5003:5693..5786 1691683607.2234256-CDS-L-elsbetiae_contig5003:5693..5786 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5003 5694..5786 +
1622816503.7348506-CDS-L-elsbetiae_contig5003:6048..6375 1622816503.7348506-CDS-L-elsbetiae_contig5003:6048..6375 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5003 6049..6375 +
1691683607.2327373-CDS-L-elsbetiae_contig5003:6048..6375 1691683607.2327373-CDS-L-elsbetiae_contig5003:6048..6375 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5003 6049..6375 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5003.13007.1
>prot_L-elsbetiae_contig5003.13007.1 ID=prot_L-elsbetiae_contig5003.13007.1|Name=mRNA_L-elsbetiae_contig5003.13007.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=360bp
DAESLLARLAGKAKQAAAAALSASAAASGAERAGPAAARRPERAAAATAV ATGSLADVAGGPGDYAGAAVGSSETGEGGGGGRREPGLAAVEAGGGRARL AELCKEDKAKVARLMQDLVKLRAEKDGQGARFERLRAQNESIVKEMAALK VKFGQSMQLLRKYQSIMQEGGPAAGRRPGVGGPDGAQGAGSRSVESLSAA AAAAAADTKALREALRVAEEASRAAKAAAAAEHAGRVAMAEELRRAKEQA DDLRRQLNHRVRAGKPLLVAAPEDDARPGLDSLGGAALARSAEQAPAATA SGKTTPLAAARGETAAAARRKVLPSTSTAGKGDARPERPHSQAALAGVSG HCRATSGGGR back to top mRNA from alignment at L-elsbetiae_contig5003:3906..6377+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5003.13007.1 ID=mRNA_L-elsbetiae_contig5003.13007.1|Name=mRNA_L-elsbetiae_contig5003.13007.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2472bp|location=Sequence derived from alignment at L-elsbetiae_contig5003:3906..6377+ (Laminarionema elsbetiae ELsaHSoW15)GACGCGGAGTCGTTGCTCGCCCGCCTCGCCGGGAAGGCTAAGCAGGCCGC
GGCCGCGGCGCTGTCAGCGTCGGCGGCGGCATCAGGAGCCGAGAGGGCGG
GGCCGGCGGCAGCACGGCGGCCGGAAAGAGCGGCGGCCGCAACCGCCGTG
GCGACCGGGTCTCTCGCGGATGTCGCCGGAGGGCCCGGAGACTACGCCGG
TGCCGCCGTCGGGTCTAGCGAAACCGGGGAGGGTGGCGGCGGCGGGCGGC
GAGAGCCGGGGTTGGCAGCTGTCGAAGCAGGCGGGGGTCGCGCGAGGCTG
GCGGAGCTGTGCAAGGAGGACAAGGCGAAGGTCGCTCGTCTGATGCAGGA
CCTCGTGAAGCTCAGGGCCGAGAAGGACGGGCAGGGGGCTCGCTTCGAGC
GGCTGCGGGCGCAGAACGAGTCGATCGTGAAGGAGATGGCGGCGCTCAAG
GTCAAGTTCGGGCAGAGCATGCAGCTCCTGAGGAAGTACCAG GTCGGTTG
GGTGTGCTTTTTTTGTGTTGGCGCCCCGTGTCTTGTGTGTGTGTGTGTTT
TTTTTTTTTCTTCCTTTCTGATGTTGATGTTATTTAGCCGCGATGGTTCT
CTTTTGCGCCGTTGTTGCACCAGCGGCAAGCTTCTTGAGAGTTTCCCAGT
GGCGCGGGGTGCACCGTGGGTTTCATCGATGCGTTGGAGGGCCGCATAGT
CGCGCACCCTACGTCATGGCGTTACTCGCGCGATATGCACTCTACCTTGA
TTTAGTGTCGGCGAGACGCACGACCCCTTGGGGTCCAGTTTAGTACCGCC
GGGCGCGTATGTACGTACCGTATTTTTTGTTTTATTTTTCTTCCGCGGCG
TCGAGTGTGCCTTGTTTTGTGACCACGGGCCCCCAAGGACGTTTCGGACT
AGGGAGCTAATGTGAGAAACAACAACAACTCGCGGCGCCTGTTGAGCAAG
GCCGCACTGCGCGCCGTGTGTCGATGGGTAAACGGCTTAAACGGTATATA
GGCAGCCCCGTAAATGTACAGCAGTAGTCGCCACCACTTTTTATCAATTT
TTGCCGCGGCCCCTCTGGGTGTACTCCGCCGGCCGTGTCTGGTTGCAGAG
CATCATGCAAGAGGGGGGCCCAGCAGCTGGCAGAAGACCCGGCGTGGGCG
GTCCTGACGGTGCGCAGGGTGCCGGGTCGCGATCGGTGGAAAGCCTGTCG
GCGGCGGCGGCGGCGGCGGCGGCAGATACGAAGGCACTCCGCGAGGCGCT
TCGAGTGGCCGAGGAG GTGCGTCGGCGAAAACACCCACCGCGGGCGTTTG
TTTCGGGGGAGGGAAAGGCGGTTGACCTACTGTGCATTCACGGCGACTTC
CGCCCGAACAACGGAGTTGGGAACGGTGAAAATACATTTTGATGCTCGTA
CTTGGGGGGTTCGGCATTCGTTTCTAGGACGCTGGGGGGCTGGGGGCGTC
CCTGACGGGTGGGGTTTCTTTGAGCAGCTCCGCTACTGGTCAGAATAACG
AAACGAGGATTAATTGGCAGCCAGATTATGTCGCCGCTCCTTTCTCCACG
TATCAGCTTTGCCCGGATATGCTTGCTTGGAGTTCTGCGACACATGTACA
TATATACGCCCCAACTTTTAGGACGAGTACTGAGGTGCAAGCGCGTAGAA
TGTCGACACGAAGTGGAGCCGCTCTGTCTGCTATCGGCATTCGGAGTACT
CCGCGCCGTTCTATGCTCACTTGTCCTGTCTTGTCTTGCCCTCCGTCGCT
TCGACTTGTGTGGCTTTCTCCTCTGACGTTCTCGACAGGCGTCGCGGGCA
GCCAAGGCAGCGGCGGCCGCAGAACACGCCGGGCGTGTGGCGATGGCAGA
GGAGCTGCGGAGGGCTAAGGAGCAGGCAGAC GTGAGCAGCCCAGCCGCTG
CTGAAGTAATAGCTACCGCTTTCAGTTTGCTCGACGTTGTTTTGTATCTC
CCGTTCGCGCGGGCGGAAGCTTGACGTGAATGCGTACGGAGGTGGAGTGC
CCGTACCCGAACCTCGACCATACGTAACAGCCCGCTGACGCGGCAGCTCT
CAGATTTCACGCTCTTTGTGCAGGTGCATCCAGCATCGCTGACCCCCCCC
CCCGCCCATCGCCCTTTGCTCCTCTTTCCTCTCGTGCCTGCAGGACTTAC
GGCGGCAGCTCAACCACCGCGTTCGGGCGGGAAAACCTCTCCTCGTCGCA
GCCCCAGAAGACGACGCGCGCCCGGGCCTCGATTCTCTCGGCGGCGCCGC
TCTTGCGCGCTCGGCAGAACAAGCTCCCGCAGCCACGGCGTCGGGTAAGA
CAACGCCGCTGGCGGCCGCCCGGGGGGAGACCGCTGCGGCTGCTCGCAGG
AAGGTGCTCCCGAGCACGAGCACGGCCGGCAAGGGCGACGCGCGACCGGA
ACGTCCTCACAGTCAGGCGGCTCTAGCGGGCGTTTCCGGACACTGCCGAG
CGACCTCGGGGGGTGGGAGG GC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5003:3906..6377+
>mRNA_L-elsbetiae_contig5003.13007.1 ID=mRNA_L-elsbetiae_contig5003.13007.1|Name=mRNA_L-elsbetiae_contig5003.13007.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2160bp|location=Sequence derived from alignment at L-elsbetiae_contig5003:3906..6377+ (Laminarionema elsbetiae ELsaHSoW15) GACGCGGAGTCGTTGCTCGCCCGCCTCGCCGGGAAGGCTAAGCAGGCCGC GGCCGCGGCGCTGTCAGCGTCGGCGGCGGCATCAGGAGCCGAGAGGGCGG GGCCGGCGGCAGCACGGCGGCCGGAAAGAGCGGCGGCCGCAACCGCCGTG GCGACCGGGTCTCTCGCGGATGTCGCCGGAGGGCCCGGAGACTACGCCGG TGCCGCCGTCGGGTCTAGCGAAACCGGGGAGGGTGGCGGCGGCGGGCGGC GAGAGCCGGGGTTGGCAGCTGTCGAAGCAGGCGGGGGTCGCGCGAGGCTG GCGGAGCTGTGCAAGGAGGACAAGGCGAAGGTCGCTCGTCTGATGCAGGA CCTCGTGAAGCTCAGGGCCGAGAAGGACGGGCAGGGGGCTCGCTTCGAGC GGCTGCGGGCGCAGAACGAGTCGATCGTGAAGGAGATGGCGGCGCTCAAG GTCAAGTTCGGGCAGAGCATGCAGCTCCTGAGGAAGTACCAGGACGCGGA GTCGTTGCTCGCCCGCCTCGCCGGGAAGGCTAAGCAGGCCGCGGCCGCGG CGCTGTCAGCGTCGGCGGCGGCATCAGGAGCCGAGAGGGCGGGGCCGGCG GCAGCACGGCGGCCGGAAAGAGCGGCGGCCGCAACCGCCGTGGCGACCGG GTCTCTCGCGGATGTCGCCGGAGGGCCCGGAGACTACGCCGGTGCCGCCG TCGGGTCTAGCGAAACCGGGGAGGGTGGCGGCGGCGGGCGGCGAGAGCCG GGGTTGGCAGCTGTCGAAGCAGGCGGGGGTCGCGCGAGGCTGGCGGAGCT GTGCAAGGAGGACAAGGCGAAGGTCGCTCGTCTGATGCAGGACCTCGTGA AGCTCAGGGCCGAGAAGGACGGGCAGGGGGCTCGCTTCGAGCGGCTGCGG GCGCAGAACGAGTCGATCGTGAAGGAGATGGCGGCGCTCAAGGTCAAGTT CGGGCAGAGCATGCAGCTCCTGAGGAAGTACCAGAGCATCATGCAAGAGG GGGGCCCAGCAGCTGGCAGAAGACCCGGCGTGGGCGGTCCTGACGGTGCG CAGGGTGCCGGGTCGCGATCGGTGGAAAGCCTGTCGGCGGCGGCGGCGGC GGCGGCGGCAGATACGAAGGCACTCCGCGAGGCGCTTCGAGTGGCCGAGG AGAGCATCATGCAAGAGGGGGGCCCAGCAGCTGGCAGAAGACCCGGCGTG GGCGGTCCTGACGGTGCGCAGGGTGCCGGGTCGCGATCGGTGGAAAGCCT GTCGGCGGCGGCGGCGGCGGCGGCGGCAGATACGAAGGCACTCCGCGAGG CGCTTCGAGTGGCCGAGGAGGCGTCGCGGGCAGCCAAGGCAGCGGCGGCC GCAGAACACGCCGGGCGTGTGGCGATGGCAGAGGAGCTGCGGAGGGCTAA GGAGCAGGCAGACGCGTCGCGGGCAGCCAAGGCAGCGGCGGCCGCAGAAC ACGCCGGGCGTGTGGCGATGGCAGAGGAGCTGCGGAGGGCTAAGGAGCAG GCAGACGACTTACGGCGGCAGCTCAACCACCGCGTTCGGGCGGGAAAACC TCTCCTCGTCGCAGCCCCAGAAGACGACGCGCGCCCGGGCCTCGATTCTC TCGGCGGCGCCGCTCTTGCGCGCTCGGCAGAACAAGCTCCCGCAGCCACG GCGTCGGGTAAGACAACGCCGCTGGCGGCCGCCCGGGGGGAGACCGCTGC GGCTGCTCGCAGGAAGGTGCTCCCGAGCACGAGCACGGCCGGCAAGGGCG ACGCGCGACCGGAACGTCCTCACAGTCAGGCGGCTCTAGCGGGCGTTTCC GGACACTGCCGAGCGACCTCGGGGGGTGGGAGGGACTTACGGCGGCAGCT CAACCACCGCGTTCGGGCGGGAAAACCTCTCCTCGTCGCAGCCCCAGAAG ACGACGCGCGCCCGGGCCTCGATTCTCTCGGCGGCGCCGCTCTTGCGCGC TCGGCAGAACAAGCTCCCGCAGCCACGGCGTCGGGTAAGACAACGCCGCT GGCGGCCGCCCGGGGGGAGACCGCTGCGGCTGCTCGCAGGAAGGTGCTCC CGAGCACGAGCACGGCCGGCAAGGGCGACGCGCGACCGGAACGTCCTCAC AGTCAGGCGGCTCTAGCGGGCGTTTCCGGACACTGCCGAGCGACCTCGGG GGGTGGGAGG back to top