mRNA_L-elsbetiae_contig5.12997.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5.12997.1
Unique NamemRNA_L-elsbetiae_contig5.12997.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5.12997.1 vs. uniprot
Match: D7FL29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL29_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 4.700e-65
Identity = 118/136 (86.76%), Postives = 122/136 (89.71%), Query Frame = 1
Query:   28 LVPTASARRNLSSLSLALAVDRPILLHGAAGAGKSILAREAARLISA---GSDEDTEASPPPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAATTGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG 426
            LVPTASARRNLSSLSLAL VDRPILL+G AG+GKS+LAREAARLIS    G D +  AS  PLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAA  GTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG
Sbjct:  402 LVPTASARRNLSSLSLALTVDRPILLYGPAGSGKSLLAREAARLISNSGDGVDPEPGASSTPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAAAAGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG 537          
BLAST of mRNA_L-elsbetiae_contig5.12997.1 vs. uniprot
Match: A0A6H5JB27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB27_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 8.920e-58
Identity = 118/184 (64.13%), Postives = 120/184 (65.22%), Query Frame = 1
Query:   28 LVPTASARRNLSSLSLALAVDRPILLHGAAGAGKSILAREAARLISA---------------------------------------------------GSDEDTEASPPPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAATTGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG 426
            LVPTASARRNLSSLSLAL VDRPILLHG AG+GKS+LAREAARLIS                                                    G D D  AS   LLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALT AA  GTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG
Sbjct:  401 LVPTASARRNLSSLSLALTVDRPILLHGPAGSGKSLLAREAARLISNSGAGMTVRPQLKVQPVILNQPRQSIQNDIHVLTNLAASPHAALNPIPCEADGVDPDPGASSTALLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTHAAAAGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG 584          
BLAST of mRNA_L-elsbetiae_contig5.12997.1 vs. uniprot
Match: A0A835Z947_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z947_9STRA)

HSP 1 Score: 155 bits (392), Expect = 4.070e-41
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 1
Query:   58 LSSLSLALAVDRPILLHGAAGAGKSILAREAARLISAGSDEDTEASPPPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAATTGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG 426
            + +LSLAL    P+LLHGAAGAGKS L REAARL   G        P PLLELHLDDQTDS++LLGA+ CT+ PGEF W+ G LTRA   G WV+IED+DR PFEVLAA+ PLLEGRPL +PG
Sbjct:    1 MRALSLALLQPGPVLLHGAAGAGKSALLREAARLSCRG--------PAPLLELHLDDQTDSRTLLGAYVCTEAPGEFTWQAGPLTRAVALGQWVVIEDVDRVPFEVLAALVPLLEGRPLVIPG 115          
BLAST of mRNA_L-elsbetiae_contig5.12997.1 vs. uniprot
Match: A0A662YAW0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YAW0_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.770e-40
Identity = 79/133 (59.40%), Postives = 99/133 (74.44%), Query Frame = 1
Query:   28 LVPTASARRNLSSLSLALAVDRPILLHGAAGAGKSILAREAARLISAGSDEDTEASPPPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAATTGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG 426
            LVPT S +RNL SL++AL + RPIL+ GA G GK+   RE ARL  +G+D+        L+ELHLDDQ DSK+LLG++ CTD+PGEF W+PGALT A   G WV++ED+DRAPFEVLAA+ PLLE R + LPG
Sbjct:  355 LVPTPSTKRNLQSLAIALGLKRPILVAGAGGCGKTATIRELARL--SGNDD--------LVELHLDDQIDSKTLLGSYVCTDIPGEFTWQPGALTTAVLAGRWVVVEDIDRAPFEVLAALMPLLETREMVLPG 477          
BLAST of mRNA_L-elsbetiae_contig5.12997.1 vs. uniprot
Match: A0A0W8D5B3_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D5B3_PHYNI)

HSP 1 Score: 152 bits (385), Expect = 3.420e-40
Identity = 81/133 (60.90%), Postives = 97/133 (72.93%), Query Frame = 1
Query:   28 LVPTASARRNLSSLSLALAVDRPILLHGAAGAGKSILAREAARLISAGSDEDTEASPPPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAATTGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG 426
            LVPT S +RNL SL++AL + RPIL+ G  G GK+   RE ARL S  SD         ++ELHLDDQ DSK+LLG++ CTDVPGEFAW+PGALT A   G WV+IED+DRAPFEVLAA+ PLLE R + LPG
Sbjct:  339 LVPTPSTKRNLQSLAIALGLKRPILVAGPGGCGKTATIRELARL-SGNSD---------MVELHLDDQIDSKTLLGSYVCTDVPGEFAWQPGALTTAVLAGRWVVIEDIDRAPFEVLAALMPLLETREMVLPG 461          
BLAST of mRNA_L-elsbetiae_contig5.12997.1 vs. uniprot
Match: A0A5D6XYG6_9STRA (VWFA domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYG6_9STRA)

HSP 1 Score: 152 bits (385), Expect = 3.670e-40
Identity = 78/133 (58.65%), Postives = 101/133 (75.94%), Query Frame = 1
Query:   28 LVPTASARRNLSSLSLALAVDRPILLHGAAGAGKSILAREAARLISAGSDEDTEASPPPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAATTGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG 426
            LV TAS +RNL SL++AL + RPIL+ GA G GK+ + RE ARL  +G+D+        ++ELHLDDQ DSK+LLG++ CTD+PGEF W+PGALT A  +G WV+IED+DRAPFEVLAA+ PLLE R + +PG
Sbjct:  326 LVATASTKRNLQSLAIALGLKRPILVAGAGGCGKTAMIRELARL--SGNDD--------MVELHLDDQIDSKTLLGSYVCTDIPGEFTWQPGALTTAVQSGRWVVIEDIDRAPFEVLAALMPLLETREMVIPG 448          
BLAST of mRNA_L-elsbetiae_contig5.12997.1 vs. uniprot
Match: W2Q5P2_PHYPN (VWFA domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q5P2_PHYPN)

HSP 1 Score: 152 bits (385), Expect = 3.670e-40
Identity = 81/133 (60.90%), Postives = 97/133 (72.93%), Query Frame = 1
Query:   28 LVPTASARRNLSSLSLALAVDRPILLHGAAGAGKSILAREAARLISAGSDEDTEASPPPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAATTGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG 426
            LVPT S +RNL SL++AL + RPIL+ G  G GK+   RE ARL S  SD         ++ELHLDDQ DSK+LLG++ CTDVPGEFAW+PGALT A   G WV+IED+DRAPFEVLAA+ PLLE R + LPG
Sbjct:  339 LVPTPSTKRNLQSLAIALGLKRPILVAGPGGCGKTATIRELARL-SGNSD---------MVELHLDDQIDSKTLLGSYVCTDVPGEFAWQPGALTTAVLAGRWVVIEDIDRAPFEVLAALMPLLETREMVLPG 461          
BLAST of mRNA_L-elsbetiae_contig5.12997.1 vs. uniprot
Match: A0A421GVK8_9STRA (Midasin n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GVK8_9STRA)

HSP 1 Score: 151 bits (382), Expect = 9.290e-40
Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 1
Query:   28 LVPTASARRNLSSLSLALAVDRPILLHGAAGAGKSILAREAARLISAGSDEDTEASPPPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAATTGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG 426
            LVPT+S +RNL SL++AL + RP+L+ G  G GK+   RE ARL  +G+D+        ++ELHLDDQ DSK+LLG++ CTD+PGEF W+PGALT A   G WV+IED+DRAPFEVLAA+ PLLE R + LPG
Sbjct:  329 LVPTSSTKRNLQSLAIALGLKRPVLVAGPGGCGKTATIRELARL--SGNDD--------MVELHLDDQIDSKTLLGSYVCTDIPGEFTWQPGALTTAVLAGRWVVIEDIDRAPFEVLAALMPLLETREMVLPG 451          
BLAST of mRNA_L-elsbetiae_contig5.12997.1 vs. uniprot
Match: H3GJC4_PHYRM (VWFA domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJC4_PHYRM)

HSP 1 Score: 151 bits (381), Expect = 1.270e-39
Identity = 78/133 (58.65%), Postives = 94/133 (70.68%), Query Frame = 1
Query:   28 LVPTASARRNLSSLSLALAVDRPILLHGAAGAGKSILAREAARLISAGSDEDTEASPPPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAATTGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG 426
            LVPT S +RNL SL++AL + RPIL+ G  G GK+   RE ARL   G           ++ELHLDDQ DSK+LLG++ CTDVPGEF W+PGALT A   G WV+IED+DRAPFEVLAA+ PLLE R + LPG
Sbjct:  318 LVPTPSTKRNLQSLAIALGLKRPILVAGPGGCGKTATIRELARLSGNGD----------MVELHLDDQIDSKTLLGSYVCTDVPGEFTWQPGALTTAVLAGRWVVIEDIDRAPFEVLAALMPLLETREMVLPG 440          
BLAST of mRNA_L-elsbetiae_contig5.12997.1 vs. uniprot
Match: G4ZMS6_PHYSP (VWFA domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4ZMS6_PHYSP)

HSP 1 Score: 151 bits (381), Expect = 1.270e-39
Identity = 78/133 (58.65%), Postives = 94/133 (70.68%), Query Frame = 1
Query:   28 LVPTASARRNLSSLSLALAVDRPILLHGAAGAGKSILAREAARLISAGSDEDTEASPPPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAATTGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG 426
            LVPT S +RNL SL++AL + RPIL+ G  G GK+   RE ARL   G           ++ELHLDDQ DSK+LLG++ CTDVPGEF W+PGALT A   G WV+IED+DRAPFEVLAA+ PLLE R + LPG
Sbjct:  334 LVPTPSTKRNLQSLAIALGLKRPILVAGPGGCGKTATIRELARLSGNGD----------MVELHLDDQIDSKTLLGSYVCTDVPGEFTWQPGALTTAVLAGRWVVIEDIDRAPFEVLAALMPLLETREMVLPG 456          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5.12997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL29_ECTSI4.700e-6586.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB27_9PHAE8.920e-5864.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z947_9STRA4.070e-4165.04P-loop containing nucleoside triphosphate hydrolas... [more]
A0A662YAW0_9STRA1.770e-4059.40Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A0W8D5B3_PHYNI3.420e-4060.90Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A5D6XYG6_9STRA3.670e-4058.65VWFA domain-containing protein n=1 Tax=Pythium bra... [more]
W2Q5P2_PHYPN3.670e-4060.90VWFA domain-containing protein n=9 Tax=Phytophthor... [more]
A0A421GVK8_9STRA9.290e-4057.89Midasin n=5 Tax=Phytophthora kernoviae TaxID=32545... [more]
H3GJC4_PHYRM1.270e-3958.65VWFA domain-containing protein n=1 Tax=Phytophthor... [more]
G4ZMS6_PHYSP1.270e-3958.65VWFA domain-containing protein n=8 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5contigL-elsbetiae_contig5:80451..81100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.3
Seed ortholog evalue1.8e-56
Seed eggNOG ortholog2880.D7FL29
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons2
Model size428
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816502.2990928-CDS-L-elsbetiae_contig5:80450..807071622816502.2990928-CDS-L-elsbetiae_contig5:80450..80707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5 80451..80707 -
1691683606.1668875-CDS-L-elsbetiae_contig5:80450..807071691683606.1668875-CDS-L-elsbetiae_contig5:80450..80707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5 80451..80707 -
1622816502.311445-CDS-L-elsbetiae_contig5:80931..811001622816502.311445-CDS-L-elsbetiae_contig5:80931..81100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5 80932..81100 -
1691683606.1806006-CDS-L-elsbetiae_contig5:80931..811001691683606.1806006-CDS-L-elsbetiae_contig5:80931..81100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5 80932..81100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5.12997.1prot_L-elsbetiae_contig5.12997.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5 80451..81100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5.12997.1

>prot_L-elsbetiae_contig5.12997.1 ID=prot_L-elsbetiae_contig5.12997.1|Name=mRNA_L-elsbetiae_contig5.12997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
QGRGRGSTRLVPTASARRNLSSLSLALAVDRPILLHGAAGAGKSILAREA
ARLISAGSDEDTEASPPPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRP
GALTRAATTGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPG
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mRNA from alignment at L-elsbetiae_contig5:80451..81100-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5.12997.1 ID=mRNA_L-elsbetiae_contig5.12997.1|Name=mRNA_L-elsbetiae_contig5.12997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=650bp|location=Sequence derived from alignment at L-elsbetiae_contig5:80451..81100- (Laminarionema elsbetiae ELsaHSoW15)
CAGGGGCGAGGGCGGGGGTCGACACGTCTGGTGCCTACTGCTTCCGCTCG GCGCAACCTTTCTTCGCTCTCCCTCGCCCTGGCTGTGGATAGACCAATAC TCCTGCACGGCGCTGCCGGCGCCGGAAAGAGCATTCTCGCGCGCGAAGCC GCCCGCCTCATCTCCGCAGGTAAGCTTTTGTCGGTCAATACAGTTGTGTT TCGAGTCGTGTTTCCGCCGCCTCGGCCATTTTTGGTTGCCTCTCGCGTTA CTGCTGTTGCACTTGTATGTAGATAATAACCATCCCATTCAACCCAACAG CAGGCGCGTCGACTGCATCCAGAGCTCCCCTCTCACACACTTTTTCTCTC TCGCTATCTTTTTCCCCCTTTCCCCCAATTATAAATAAATCAGGCAGCGA CGAGGACACGGAAGCATCACCCCCTCCTCTCCTGGAACTCCACCTCGACG ACCAGACCGACAGCAAGTCTCTCCTCGGCGCGCACGCCTGCACGGACGTC CCGGGGGAGTTCGCCTGGCGGCCGGGGGCGCTGACCCGCGCCGCCACCAC CGGCACCTGGGTGCTCATCGAGGATCTTGACCGCGCGCCGTTCGAGGTGC TTGCGGCGATCGGCCCCCTGCTGGAGGGCAGGCCGTTGACCCTGCCAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5:80451..81100-

>mRNA_L-elsbetiae_contig5.12997.1 ID=mRNA_L-elsbetiae_contig5.12997.1|Name=mRNA_L-elsbetiae_contig5.12997.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig5:80451..81100- (Laminarionema elsbetiae ELsaHSoW15)
CAGGGGCGAGGGCGGGGGTCGACACGTCTGGTGCCTACTGCTTCCGCTCG
GCGCAACCTTTCTTCGCTCTCCCTCGCCCTGGCTGTGGATAGACCAATAC
TCCTGCACGGCGCTGCCGGCGCCGGAAAGAGCATTCTCGCGCGCGAAGCC
GCCCGCCTCATCTCCGCAGCAGGGGCGAGGGCGGGGGTCGACACGTCTGG
TGCCTACTGCTTCCGCTCGGCGCAACCTTTCTTCGCTCTCCCTCGCCCTG
GCTGTGGATAGACCAATACTCCTGCACGGCGCTGCCGGCGCCGGAAAGAG
CATTCTCGCGCGCGAAGCCGCCCGCCTCATCTCCGCAGGCAGCGACGAGG
ACACGGAAGCATCACCCCCTCCTCTCCTGGAACTCCACCTCGACGACCAG
ACCGACAGCAAGTCTCTCCTCGGCGCGCACGCCTGCACGGACGTCCCGGG
GGAGTTCGCCTGGCGGCCGGGGGCGCTGACCCGCGCCGCCACCACCGGCA
CCTGGGTGCTCATCGAGGATCTTGACCGCGCGCCGTTCGAGGTGCTTGCG
GCGATCGGCCCCCTGCTGGAGGGCAGGCCGTTGACCCTGCCAGGGGCAGC
GACGAGGACACGGAAGCATCACCCCCTCCTCTCCTGGAACTCCACCTCGA
CGACCAGACCGACAGCAAGTCTCTCCTCGGCGCGCACGCCTGCACGGACG
TCCCGGGGGAGTTCGCCTGGCGGCCGGGGGCGCTGACCCGCGCCGCCACC
ACCGGCACCTGGGTGCTCATCGAGGATCTTGACCGCGCGCCGTTCGAGGT
GCTTGCGGCGATCGGCCCCCTGCTGGAGGGCAGGCCGTTGACCCTGCCAG
GG
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