mRNA_L-elsbetiae_contig4995.12989.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4995.12989.1
Unique NamemRNA_L-elsbetiae_contig4995.12989.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4995.12989.1 vs. uniprot
Match: D7FUN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN2_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 5.120e-67
Identity = 148/256 (57.81%), Postives = 161/256 (62.89%), Query Frame = 1 
Query:    1 MTYTALAAETEVIENLREVLDGLQSNIRNLLVDMETELKQPPPPSVLQGAASYANNAARSAVTVAIDGFNNASKIFDASFEALAEPSRSTLLRSSELFPWQSWYQAWTNITKGEDSLFA-AEHKLLSAAASA---------------------EGEYILGG--------SGGSGGGDTAHEVGPFAGPGA-GSGGPADRQEEVPRPWWGRRSVKRWRPEEEETPAVKPPGDGGGERGARGGVAPAGMKPGRERWKG 675
            MTY ALAAETEVIENLREVLDGLQSNIR  L DMETEL+QPPPPSVLQGAASYANN ARSAV VAIDGFNNAS++FDASFEALAEPSR TLLRS+ELFPWQSWYQAWTNITKGED+LFA AE +LL AA                        + E ++GG        S GS G D     G  A P   GSGG   R          RR +KRW+PE     A  P    GG+  A G      M+  R RWKG
Sbjct:    1 MTYAALAAETEVIENLREVLDGLQSNIRKSLEDMETELRQPPPPSVLQGAASYANNVARSAVAVAIDGFNNASRVFDASFEALAEPSRRTLLRSTELFPWQSWYQAWTNITKGEDNLFATAEPRLLKAALEGXXXXXXXXXXPHSLADDGTHNDEEGLVGGFDPSALLTSSGSSGRDRGRGAGGVAAPSVEGSGGGGARPGR-------RRGLKRWKPE---LAAESPESGEGGQGPAAGNGRDGSMELRRRRWKG 246
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BLAST of mRNA_L-elsbetiae_contig4995.12989.1 vs. uniprot
Match: A0A6H5KN12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN12_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 7.310e-56
Identity = 110/129 (85.27%), Postives = 118/129 (91.47%), Query Frame = 1 
Query:    1 MTYTALAAETEVIENLREVLDGLQSNIRNLLVDMETELKQPPPPSVLQGAASYANNAARSAVTVAIDGFNNASKIFDASFEALAEPSRSTLLRSSELFPWQSWYQAWTNITKGEDSLFA-AEHKLLSAA 384
            MTYTALAAETEVIENLREVL GLQSNIR  L DMETEL+QPPPPSVLQGAASYANN AR AV VAIDGFNNAS++FDASFEALAEPSR TLLRS+ELFPWQ+W+QAWTNITKGED+LFA AE +LL AA
Sbjct:  631 MTYTALAAETEVIENLREVLAGLQSNIRRSLEDMETELRQPPPPSVLQGAASYANNVARLAVAVAIDGFNNASRVFDASFEALAEPSRRTLLRSTELFPWQTWHQAWTNITKGEDNLFATAEPRLLEAA 759
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4995.12989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUN2_ECTSI5.120e-6757.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN12_9PHAE7.310e-5685.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4995contigL-elsbetiae_contig4995:1445..4870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_002070.1
Exons4
Model size1508
Cds size678
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4995.12989.1prot_L-elsbetiae_contig4995.12989.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4995 1445..4040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816500.7818098-CDS-L-elsbetiae_contig4995:1444..15161622816500.7818098-CDS-L-elsbetiae_contig4995:1444..1516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4995 1445..1516 +
1691683604.9175463-CDS-L-elsbetiae_contig4995:1444..15161691683604.9175463-CDS-L-elsbetiae_contig4995:1444..1516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4995 1445..1516 +
1622816500.792463-CDS-L-elsbetiae_contig4995:1766..18631622816500.792463-CDS-L-elsbetiae_contig4995:1766..1863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4995 1767..1863 +
1691683604.9285874-CDS-L-elsbetiae_contig4995:1766..18631691683604.9285874-CDS-L-elsbetiae_contig4995:1766..1863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4995 1767..1863 +
1622816500.8047128-CDS-L-elsbetiae_contig4995:2788..29271622816500.8047128-CDS-L-elsbetiae_contig4995:2788..2927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4995 2789..2927 +
1691683604.9370348-CDS-L-elsbetiae_contig4995:2788..29271691683604.9370348-CDS-L-elsbetiae_contig4995:2788..2927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4995 2789..2927 +
1622816500.820441-CDS-L-elsbetiae_contig4995:3670..40401622816500.820441-CDS-L-elsbetiae_contig4995:3670..4040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4995 3671..4040 +
1691683604.9497228-CDS-L-elsbetiae_contig4995:3670..40401691683604.9497228-CDS-L-elsbetiae_contig4995:3670..4040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4995 3671..4040 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816500.8339195-UTR-L-elsbetiae_contig4995:4040..48701622816500.8339195-UTR-L-elsbetiae_contig4995:4040..4870Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4995 4041..4870 +
1691683604.9591634-UTR-L-elsbetiae_contig4995:4040..48701691683604.9591634-UTR-L-elsbetiae_contig4995:4040..4870Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4995 4041..4870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4995.12989.1

>prot_L-elsbetiae_contig4995.12989.1 ID=prot_L-elsbetiae_contig4995.12989.1|Name=mRNA_L-elsbetiae_contig4995.12989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=226bp
MTYTALAAETEVIENLREVLDGLQSNIRNLLVDMETELKQPPPPSVLQGA
ASYANNAARSAVTVAIDGFNNASKIFDASFEALAEPSRSTLLRSSELFPW
QSWYQAWTNITKGEDSLFAAEHKLLSAAASAEGEYILGGSGGSGGGDTAH
EVGPFAGPGAGSGGPADRQEEVPRPWWGRRSVKRWRPEEEETPAVKPPGD
GGGERGARGGVAPAGMKPGRERWKG*
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mRNA from alignment at L-elsbetiae_contig4995:1445..4870+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4995.12989.1 ID=mRNA_L-elsbetiae_contig4995.12989.1|Name=mRNA_L-elsbetiae_contig4995.12989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3426bp|location=Sequence derived from alignment at L-elsbetiae_contig4995:1445..4870+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGTACACCGCCCTCGCGGCGGAGACGGAGGTGATCGAGAACCTGAG
AGAGGTGCTGGACGGCTTGCAGGTGAGGGGGGGGGGGCAGGCAGGCAGGG
CAGAGGAGGTAGGGTCGGGGGTAAGGTTTGAGGGTTGTTTTTGGTTACGT
ACGACTAGGGTTGCAATGCTAACGACCTTTTCGTAACTTTTTACACAGCA
GTTGGTCCGTCCGCTCAATGGTTCCGTCATCCGACGTTTTTCGTTGTCGT
TTTTTCCCGCCGCACTACAATAACTGCTGTCTGTCTGTCTGTCGTTTTGT
ATTTTGTGACGACGTTTTCAAGAGCAACATCCGCAACTTGCTGGTGGACA
TGGAGACGGAGCTGAAGCAGCCGCCGCCTCCTAGCGTCCTGCAGGGAGCC
GCTTCGTACGCCAACAACGGTGGGGAAACGGGTAGCGTGTTCTTGACGTG
GAATACCCCCTCCCCCCCCTGCTGTCGAGTTTGAAAGATCCGGGGGGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTTTTTTGTTTCTTCTTGATCATGGA
GGGTCTCGCAGCGAAATGCTTCGGGCGCAAAGGAATGGCGCGTTGATTTG
TGATTTGTCTTTTTCGCTGCCGTGAGGTTGGGTTGTGTTGGCGGCCGGCG
GTGAGCTGACGGGAGATCCGGCGTGTTCTGGTTCTGTGGTGGTTGTGCCG
GTGACCGGGCGATATAGAACCAAACAACCGCCGATGTGATTGGGCGAGAG
TACAGGCTTCATACAAGTATATGACTTTATACAAATTGAGTTTTCCTTGG
GTGCAAGGTCTGTGGGCTGTTGGTCAAGCCACTTAAGGGCGCACTGGAGC
CAGGCTTTTCAGGAGACTTTTCAGGCTGGCCACGCACGTGGCGACGCACA
CCAGTTCGGGCTCTGTAGTGTGACACGGCAACTGTGTTGCGCAACTCGAA
CAGCAGTCAACAACTCTGTTCTCTCGCGTCACCCCCTGTATTGTTCCGGT
CATTAGCAACGTCTGAAAAGGGGAACTTGTATGTATGTACATATTAGTGT
TACCACAGTAGTATAACAGTTCAGAGGATTCAAAGGCGAACCAAGGCTGC
AGGAGACCTTTATTGTTGTAGGGAATTCTGGTCGAGCACATCCTCTCATC
GACATGACTGGATTACATACATACGCCGAGCTTGAATTGATCCTACCCCT
CCCCTTGCCCGCCCACCGCCTGCGCCGCCTGTGCTGCTATTCATGTCAAA
CCACCAACACCAACACCAACAATCACAACCACAAACAACAACAACAACAA
CAACAACAACAACAACAACGGCGACCACAATAACATTGTACCAGCGGCGA
GGTCGGCCGTAACGGTCGCTATTGACGGCTTCAACAACGCCTCGAAGATT
TTCGACGCGTCTTTCGAGGCCTTGGCGGAGCCGTCGCGGAGTACCCTCCT
GCGGTCGTCCGAGCTGTTCCCGTGGCAGAGCTGGTGAGGAGCGATGGCAC
GGAGGCATGCACGCTTGTCGTGGGGGCATGGGCATGCATGTGGTGGACGG
CAAACGTTAAGGCAGTACCGGTAGTAGGGAATAGGCTACAATACATTTTT
GTCCCACGGTTTTGGAGCTCTTGCAGTGACTACATTTTTTTTGACGTTAT
GTACCGTAATCATGCGAGTGATCGCACCCCCCCCCGGATCGATTTTCAAA
GCTCGACCCCTCCTTGACGAAGAGGGTGCCAACACCAAACGGCACGTTTT
TATGACAGATCTCGACGTGATCGTGCCAATGCCACCCTTTTCGGTGCCGG
CACCCCCCTTCGTCAAGACGCAATCGAGCCTTGAAAATCGGTACGGGGGT
GTGGGATGACTCGCATGATTACGGTATACTTGGTATACTTTGTGGAGAAA
GGGGGTGCTGTTGTGTCTCCAAAGAGACCCTTAAAGCCAACCAACCTGTG
AAAACGAATCAATGCCATTCGTCCCGTTTCGACAAAACGTCGGCGCGCTC
CGTCCCGCGGCACTTGTTAAGTAAGCCATGCGAGGTCTATCGTCGAACAA
CTAACCAGAGGGCAGGCACGGCTGTATGTGTGCGCCCCCCCCTCCCACTC
TCTAAATGGCTCGAGAGGGAATTTTTTGGCGCGTGGTTAAACTGAGAAGC
AAGACTCCCTTTGAAAACATTGGATAACACCCCCCCCCCAACCCCTCCCC
TGTTTCGCCTTGACCCACACACACAGGTACCAGGCGTGGACCAACATCAC
CAAGGGCGAGGATAGCCTGTTCGCGGCGGAGCACAAGCTCCTGAGTGCCG
CCGCTTCCGCAGAGGGAGAGTACATCTTGGGTGGCAGTGGCGGTAGCGGC
GGTGGCGACACGGCTCACGAGGTTGGGCCGTTCGCAGGGCCGGGCGCGGG
GAGCGGGGGCCCCGCTGATCGGCAGGAAGAGGTACCGCGGCCGTGGTGGG
GTCGCCGAAGCGTGAAGCGTTGGCGACCAGAAGAAGAAGAGACGCCTGCT
GTGAAGCCTCCCGGGGACGGGGGCGGGGAGCGGGGTGCCCGCGGGGGAGT
TGCTCCGGCCGGCATGAAGCCCGGTAGAGAGAGATGGAAGGGGTGATTTG
TGATTTGATATGTATAAGACTTCTATAAATACTTCGATGTAGTTTTTTTT
TTTTTTTTTCTCCTCCCATTGTTGGCTTAAATATTCGTCGTCTGCCCCAC
TGGCCCCCTTCCTCCACTACGACCGGCTAGACGAGAGGGCGAAGACGGGG
GATTTGTTTTAATTACTGCGTACACATAGATGAATACTTACATCGTCTAG
TAATCTCTTTTGCGAAATGGTCGGGGCCCTTTTCTTTCGGCCGCATTTGT
GATGAAGTTTTTCGTGGCCGTTTTCTCGTGATAGGAGGTTGTGTCAGTAT
AACCCTACATATAAAGTTGGTTGGTTGGATCTGACCACCAGGCTTAGCGT
ACGTCCGAGCCCAGCCCACCCGCGTGCGCGATGGATAGCTGTGTCAGGGA
TCTCTCTGGTAATAAGTGTTGGCTGTGTTGGCTCAGTCAAGCTGTCGTAG
AACTGTCGGCAAGGATGCACCGTTTTTATAGGAAGCTATGTTATAGACGC
CCGTTATTAGCGCACGGCTGCTTCTCCACCGTATTCGTTTGTACCGACAT
GTGTACTCCTGGAGTATCTTGCTTTGACGAAATTGTGAAAGGTTTAACTC
GGTAATTGGATATCGTATGTATCTAGCATATTCGTGACGCTCGGTTTGTG
CAATTCGGCGATACATAAGGCCATCCTTTGGTACTGCTGCTACAAGGCGC
AGAGAGAGGCTGAAAGCGAAAGGACGAGGATAGACTATATATATGCTTCT
CCCCTACGCCGAACATCTGCAACACTTGTTTTTGGTCTGTTTTCAGTGCT
GCTCCGTTTTATCGGCCAGAGCCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4995:1445..4870+

>mRNA_L-elsbetiae_contig4995.12989.1 ID=mRNA_L-elsbetiae_contig4995.12989.1|Name=mRNA_L-elsbetiae_contig4995.12989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1356bp|location=Sequence derived from alignment at L-elsbetiae_contig4995:1445..4870+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGTACACCGCCCTCGCGGCGGAGACGGAGGTGATCGAGAACCTGAG
AGAGGTGCTGGACGGCTTGCAGATGACGTACACCGCCCTCGCGGCGGAGA
CGGAGGTGATCGAGAACCTGAGAGAGGTGCTGGACGGCTTGCAGAGCAAC
ATCCGCAACTTGCTGGTGGACATGGAGACGGAGCTGAAGCAGCCGCCGCC
TCCTAGCGTCCTGCAGGGAGCCGCTTCGTACGCCAACAACGAGCAACATC
CGCAACTTGCTGGTGGACATGGAGACGGAGCTGAAGCAGCCGCCGCCTCC
TAGCGTCCTGCAGGGAGCCGCTTCGTACGCCAACAACGCGGCGAGGTCGG
CCGTAACGGTCGCTATTGACGGCTTCAACAACGCCTCGAAGATTTTCGAC
GCGTCTTTCGAGGCCTTGGCGGAGCCGTCGCGGAGTACCCTCCTGCGGTC
GTCCGAGCTGTTCCCGTGGCAGAGCTGCGGCGAGGTCGGCCGTAACGGTC
GCTATTGACGGCTTCAACAACGCCTCGAAGATTTTCGACGCGTCTTTCGA
GGCCTTGGCGGAGCCGTCGCGGAGTACCCTCCTGCGGTCGTCCGAGCTGT
TCCCGTGGCAGAGCTGGTACCAGGCGTGGACCAACATCACCAAGGGCGAG
GATAGCCTGTTCGCGGCGGAGCACAAGCTCCTGAGTGCCGCCGCTTCCGC
AGAGGGAGAGTACATCTTGGGTGGCAGTGGCGGTAGCGGCGGTGGCGACA
CGGCTCACGAGGTTGGGCCGTTCGCAGGGCCGGGCGCGGGGAGCGGGGGC
CCCGCTGATCGGCAGGAAGAGGTACCGCGGCCGTGGTGGGGTCGCCGAAG
CGTGAAGCGTTGGCGACCAGAAGAAGAAGAGACGCCTGCTGTGAAGCCTC
CCGGGGACGGGGGCGGGGAGCGGGGTGCCCGCGGGGGAGTTGCTCCGGCC
GGCATGAAGCCCGGTAGAGAGAGATGGAAGGGGTGAGTACCAGGCGTGGA
CCAACATCACCAAGGGCGAGGATAGCCTGTTCGCGGCGGAGCACAAGCTC
CTGAGTGCCGCCGCTTCCGCAGAGGGAGAGTACATCTTGGGTGGCAGTGG
CGGTAGCGGCGGTGGCGACACGGCTCACGAGGTTGGGCCGTTCGCAGGGC
CGGGCGCGGGGAGCGGGGGCCCCGCTGATCGGCAGGAAGAGGTACCGCGG
CCGTGGTGGGGTCGCCGAAGCGTGAAGCGTTGGCGACCAGAAGAAGAAGA
GACGCCTGCTGTGAAGCCTCCCGGGGACGGGGGCGGGGAGCGGGGTGCCC
GCGGGGGAGTTGCTCCGGCCGGCATGAAGCCCGGTAGAGAGAGATGGAAG
GGGTGA
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