mRNA_L-elsbetiae_contig4974.12958.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4974.12958.1
Unique NamemRNA_L-elsbetiae_contig4974.12958.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4974.12958.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 4.800e-6
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   25 KCGHPGCNKRRSHGVEGSKTAEFCSPHAKEGMVNVCRKR 141
            +CGH  C KR ++GV GSK  EFCS HA++GMVNV  KR
Sbjct:    3 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 41
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BLAST of mRNA_L-elsbetiae_contig4974.12958.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.480e-6
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   25 KCGHPGCNKRRSHGVEGSKTAEFCSPHAKEGMVNVCRKR 141
            +CGH  C KR ++GV GSK  EFCS HA++GMVNV  KR
Sbjct:   63 QCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4974.12958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI73_ECTSI4.800e-661.54EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE5.480e-661.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4974contigL-elsbetiae_contig4974:3347..4876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size609
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4974.12958.1prot_L-elsbetiae_contig4974.12958.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4974 3464..4813 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816497.96268-UTR-L-elsbetiae_contig4974:3346..34631622816497.96268-UTR-L-elsbetiae_contig4974:3346..3463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4974 3347..3463 +
1691683602.9143753-UTR-L-elsbetiae_contig4974:3346..34631691683602.9143753-UTR-L-elsbetiae_contig4974:3346..3463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4974 3347..3463 +
1622816497.9966226-UTR-L-elsbetiae_contig4974:4813..48761622816497.9966226-UTR-L-elsbetiae_contig4974:4813..4876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4974 4814..4876 +
1691683602.952047-UTR-L-elsbetiae_contig4974:4813..48761691683602.952047-UTR-L-elsbetiae_contig4974:4813..4876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4974 4814..4876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816497.9726713-CDS-L-elsbetiae_contig4974:3463..38431622816497.9726713-CDS-L-elsbetiae_contig4974:3463..3843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4974 3464..3843 +
1691683602.9285336-CDS-L-elsbetiae_contig4974:3463..38431691683602.9285336-CDS-L-elsbetiae_contig4974:3463..3843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4974 3464..3843 +
1622816497.9862833-CDS-L-elsbetiae_contig4974:4764..48131622816497.9862833-CDS-L-elsbetiae_contig4974:4764..4813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4974 4765..4813 +
1691683602.9394157-CDS-L-elsbetiae_contig4974:4764..48131691683602.9394157-CDS-L-elsbetiae_contig4974:4764..4813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4974 4765..4813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4974.12958.1

>prot_L-elsbetiae_contig4974.12958.1 ID=prot_L-elsbetiae_contig4974.12958.1|Name=mRNA_L-elsbetiae_contig4974.12958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MVNVCRKRCRYPGCNKRPSYGVEGSRKMEFCFPHAEDGMVRVDSHRRCGH
PGCDKHPSYGVEGSKTAELCLPHAKHGMVSSAGRVCIRTNSSGGVDRKRK
DRPPRASALAAVKDEEGVVSSAAEAVRRTTGGNKRRRMGASA*
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mRNA from alignment at L-elsbetiae_contig4974:3347..4876+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4974.12958.1 ID=mRNA_L-elsbetiae_contig4974.12958.1|Name=mRNA_L-elsbetiae_contig4974.12958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig4974:3347..4876+ (Laminarionema elsbetiae ELsaHSoW15)
GTGAGAAATGCGTGTGTAGAGCAGAAATGCGGCCACCCTGGCTGCAACAA
GCGGCGCTCGCACGGCGTGGAGGGAAGCAAGACGGCGGAGTTCTGCTCTC
CACACGCGAAGGAGGGTATGGTTAATGTTTGCCGGAAGAGATGCCGTTAT
CCTGGCTGCAACAAGCGCCCGTCGTATGGCGTGGAAGGAAGCAGAAAAAT
GGAGTTTTGCTTTCCACACGCGGAGGATGGTATGGTGAGAGTCGATAGTC
ATCGTAGATGCGGCCATCCTGGCTGCGACAAGCACCCGTCGTACGGTGTG
GAAGGAAGCAAGACGGCTGAATTATGCTTACCACACGCCAAACACGGAAT
GGTAAGCAGCGCCGGCCGTGTCTGCATTAGAACGAACAGCAGTGGTGGAG
TGGACAGAAAGCGCAAGGATCGACCCCCTCGAGCCAGCGCGCTTGCTGCC
GTGAAGGACGAGGAGGGCGTGGTGTCGAGCGCCGCGGAAGCCGTGAGGTA
TGTTTGAAGAATCACCTGCTGTGGATTGGCGCGGCGCGGTTGTATGCGGT
TTTTAGGAGTTAGTTTCCGCCCGAGCCTCTCTCTACATGAATATGCGAGG
CAGGAGTCTGGCGGCGTTTATATTATTTCTTGTTTAGATCATCGTTCACC
ATACTGTATGCAGTGCCCTCTCATGGGTATTTTTACTCGACATACACATT
TCTAGACGTTGCAACTCTTTACCCCTTGGGAGCTTCTATGTTGGCGGGTG
TCGTGGTGCCAGCGCTGGCAGGTGTCTTATATTGCCCGCGACAAATACCA
CTTTGTACACAAGAGATGCGATGTCTGCAGAAAAGCTGCCGCACTTTAAT
TTATTTGAATGCTAAACCTTTGCAAGAAGAAGCGAGTTCGCAACGTTTCA
CTGCCGTGTATCTCCCGCTGCCTTGTCCTGAGAACTGCCAGCTGTGTTAC
GACTTGGTCCTCTTTCAACCCCCCTAACGTTGGCGGCCCTTGTGTTGTCA
CAGCTGCAGCAATAGCTCTTCAGCCGTGTGGCCCTCAAATCCTTTCGCGT
ATCGTACGCGTTACTTCTATTTTGTTCGTCCTCTTCGTCGACGCCAATAA
GAACACAGGCTACCGTCCGTAGAAGGTGGCCCAGGTCGTGGCAGTATCCA
CCCACTGCCAGGGGCGGCTAGTTTCCTTTCGTGTTATTTAGGCAAGAGGA
GAGGCACAAGAGTGCCGGACCAGAGCGAGACGTCGAAGACTCTCCGCTCT
TGTCTCGGCAAGTTGTGGTTTGGAAGATTCGGGTTTCCATCTGATATCTT
GTCGATCCAACGGGTCGATATGATACCCCGATGAAGATACGATCTTCCTA
TACTTGTTGGTATGTGTACCTCTGGTTACCATCTCTTACACCTGTCATCC
ACATCTGTGCTCGACCAGGCGAACCACTGGTGGAAACAAGAGACGCCGGA
TGGGAGCAAGTGCCTAGTTACCCGTAGAAGTTTACTCCACGCAGGGTGTA
ACGAATGTACGGACGTACGTAGAAGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4974:3347..4876+

>mRNA_L-elsbetiae_contig4974.12958.1 ID=mRNA_L-elsbetiae_contig4974.12958.1|Name=mRNA_L-elsbetiae_contig4974.12958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig4974:3347..4876+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTAATGTTTGCCGGAAGAGATGCCGTTATCCTGGCTGCAACAAGCG
CCCGTCGTATGGCGTGGAAGGAAGCAGAAAAATGGAGTTTTGCTTTCCAC
ACGCGGAGGATGGTATGGTGAGAGTCGATAGTCATCGTAGATGCGGCCAT
CCTGGCTGCGACAAGCACCCGTCGTACGGTGTGGAAGGAAGCAAGACGGC
TGAATTATGCTTACCACACGCCAAACACGGAATGGTAAGCAGCGCCGGCC
GTGTCTGCATTAGAACGAACAGCAGTGGTGGAGTGGACAGAAAGCGCAAG
GATCGACCCCCTCGAGCCAGCGCGCTTGCTGCCGTGAAGGACGAGGAGGG
CGTGGTGTCGAGCGCCGCGGAAGCCGTGAGATGGTTAATGTTTGCCGGAA
GAGATGCCGTTATCCTGGCTGCAACAAGCGCCCGTCGTATGGCGTGGAAG
GAAGCAGAAAAATGGAGTTTTGCTTTCCACACGCGGAGGATGGTATGGTG
AGAGTCGATAGTCATCGTAGATGCGGCCATCCTGGCTGCGACAAGCACCC
GTCGTACGGTGTGGAAGGAAGCAAGACGGCTGAATTATGCTTACCACACG
CCAAACACGGAATGGTAAGCAGCGCCGGCCGTGTCTGCATTAGAACGAAC
AGCAGTGGTGGAGTGGACAGAAAGCGCAAGGATCGACCCCCTCGAGCCAG
CGCGCTTGCTGCCGTGAAGGACGAGGAGGGCGTGGTGTCGAGCGCCGCGG
AAGCCGTGAGGCGAACCACTGGTGGAAACAAGAGACGCCGGATGGGAGCA
AGTGCCTAGGCGAACCACTGGTGGAAACAAGAGACGCCGGATGGGAGCAA
GTGCCTAG
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