mRNA_L-elsbetiae_contig4973.12954.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4973.12954.1
Unique NamemRNA_L-elsbetiae_contig4973.12954.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4973.12954.1 vs. uniprot
Match: Q8QNA3_ESV1K (EsV-1-184 n=2 Tax=root TaxID=1 RepID=Q8QNA3_ESV1K)

HSP 1 Score: 173 bits (438), Expect = 2.430e-50
Identity = 99/228 (43.42%), Postives = 141/228 (61.84%), Query Frame = 1 
Query:   25 EEKVEEVVGVDAESFDFTNDLFRKTYGSNTMDDAQARNQTKQRQASRG---FVNEGLEVATNARLSHFEKEKVYANEWTNSCLNVIEATLLECQKAAAAHMEATRACRHKHRMMSIPLIIIGTAATALSFLSAGATCSSEEDDSSGEGVKYVVAVLTSLASVGAGVSALYSFSNKQTEHIAAGGAFTNLARRIRCQLFLPNHLRAQAEVCLVDFGAEQSHLVNTSPLL 699
            EEKVE V   D E+ D   ++F + YG++TM  A+   +   R  S+     V+ GL+V TNARLSHF+KEK+Y N+W NS L+++E  L EC +++ AH EA R CR K+RM+ IP II+                         +G+KYVVA LT+L  + +G++++Y+F +K +E+IAA GAF NLARR +   FLP HL+  +EV L D  AEQ+HL ++SPLL
Sbjct:   13 EEKVETV---DLEALDGPENIFSQEYGADTMAQARENRERLARITSKTKKHTVDPGLQVGTNARLSHFQKEKLYQNDWNNSVLDLMENLLYECTQSSKAHAEAARGCRRKYRMLMIPSIIVAXXXXXXXXXXXXXXXXXXXXXXXXDGLKYVVASLTALVGIMSGIASVYNFKSKMSENIAAAGAFANLARRCKIICFLPIHLKPNSEVALTDISAEQAHLTSSSPLL 237
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BLAST of mRNA_L-elsbetiae_contig4973.12954.1 vs. uniprot
Match: B5LWK0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK0_9PHYC)

HSP 1 Score: 150 bits (380), Expect = 1.680e-42
Identity = 80/166 (48.19%), Postives = 111/166 (66.87%), Query Frame = 1 
Query:  202 ARLSHFEKEKVYANEWTNSCLNVIEATLLECQKAAAAHMEATRACRHKHRMMSIPLIIIGTAATALSFLSAGATCSSEEDDSSGEGVKYVVAVLTSLASVGAGVSALYSFSNKQTEHIAAGGAFTNLARRIRCQLFLPNHLRAQAEVCLVDFGAEQSHLVNTSPLL 699
            ARLS+FE E+V+ N+WTN+ L+++E    +C+  ++A+ +A R  R KHR +SIP I++ + ATA SF SAG++C   +DD     VK  VA+LTS+ ++  GVSALYSF +K T  IAA G F  LA++ + Q+FL N LR   EV L +  AE  HL NTSPLL
Sbjct:    6 ARLSNFEAERVFENDWTNASLDLLEGLHKQCKDNSSAYADAARVARWKHRAVSIPTIVVASFATATSFFSAGSSC---DDDEENTAVKISVAILTSITAILGGVSALYSFDSKTTACIAASGNFDALAKKAQLQIFLSNQLRGPVEVVLTEISAEFCHLTNTSPLL 168
[Close]
BLAST of mRNA_L-elsbetiae_contig4973.12954.1 vs. uniprot
Match: B5LWK1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK1_9PHYC)

HSP 1 Score: 59.3 bits (142), Expect = 2.020e-7
Identity = 45/150 (30.00%), Postives = 74/150 (49.33%), Query Frame = 1 
Query:  244 EWTNSCLNVIEATLLECQKAAAAHMEATRACRHKHRMMSIPLIIIGTAATALSFLSAGATCSSEEDDSSGEGVKYVVAVLTSLASVGAGVSALYSFSNKQTEHIAAGGAFTNLARRIRCQLFLPNHLRAQAEVCLVDFGAEQSHLVNTSP 693
            EW++S   ++E+ L +C   A  H   +      +RM+S+P +  G AATALSF +      + + + S   V+ +VAVL+++++V A +S    +   Q  H  A G +T L RRI    F  +       V L +  A  S++   SP
Sbjct:   22 EWSSS-RTLMESWLKKCSARAHEHSRESLRSGFANRMLSVPKLFFGGAATALSFWA------TSDLNGSSHRVRVLVAVLSAISTVLASLSQFLRYDESQYRHQMAAGMYTQLCRRIELSFFSEDEGGVNDAV-LAEIAAGFSNVATFSP 163
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4973.12954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNA3_ESV1K2.430e-5043.42EsV-1-184 n=2 Tax=root TaxID=1 RepID=Q8QNA3_ESV1K[more]
B5LWK0_9PHYC1.680e-4248.19Uncharacterized protein n=1 Tax=Feldmannia species... [more]
B5LWK1_9PHYC2.020e-730.00Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4973contigL-elsbetiae_contig4973:2623..3324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-184 DUF4231
Ec32 orthologEc-06_005080.1
Exons1
Model size702
Cds size702
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816497.7947154-CDS-L-elsbetiae_contig4973:2622..33241622816497.7947154-CDS-L-elsbetiae_contig4973:2622..3324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4973 2623..3324 +
1691683602.8388581-CDS-L-elsbetiae_contig4973:2622..33241691683602.8388581-CDS-L-elsbetiae_contig4973:2622..3324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4973 2623..3324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4973.12954.1prot_L-elsbetiae_contig4973.12954.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4973 2623..3324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4973.12954.1

>prot_L-elsbetiae_contig4973.12954.1 ID=prot_L-elsbetiae_contig4973.12954.1|Name=mRNA_L-elsbetiae_contig4973.12954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=234bp
MFGEEKEEEEKVEEVVGVDAESFDFTNDLFRKTYGSNTMDDAQARNQTKQ
RQASRGFVNEGLEVATNARLSHFEKEKVYANEWTNSCLNVIEATLLECQK
AAAAHMEATRACRHKHRMMSIPLIIIGTAATALSFLSAGATCSSEEDDSS
GEGVKYVVAVLTSLASVGAGVSALYSFSNKQTEHIAAGGAFTNLARRIRC
QLFLPNHLRAQAEVCLVDFGAEQSHLVNTSPLL*
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mRNA from alignment at L-elsbetiae_contig4973:2623..3324+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4973.12954.1 ID=mRNA_L-elsbetiae_contig4973.12954.1|Name=mRNA_L-elsbetiae_contig4973.12954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig4973:2623..3324+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGGCGAGGAAAAGGAGGAGGAGGAGAAAGTCGAGGAGGTGGTGGG
CGTGGACGCCGAAAGCTTCGATTTCACCAACGACCTGTTTCGCAAGACGT
ACGGTTCCAACACCATGGACGACGCGCAGGCGCGCAACCAGACCAAACAA
AGACAGGCGTCGAGAGGATTCGTCAACGAGGGGCTAGAGGTTGCGACCAA
CGCGCGCCTGTCGCACTTCGAGAAAGAAAAGGTGTACGCGAACGAGTGGA
CGAACAGCTGTCTCAACGTCATCGAAGCGACCCTACTCGAATGCCAGAAG
GCCGCCGCCGCCCACATGGAAGCCACGCGGGCGTGCAGGCACAAACACAG
GATGATGAGCATCCCTTTAATCATCATCGGCACCGCCGCGACGGCGCTAT
CGTTCCTGTCCGCCGGCGCCACCTGCTCGTCGGAGGAAGACGACAGCAGC
GGCGAAGGCGTCAAGTACGTGGTGGCCGTCCTCACCTCGCTCGCGAGCGT
AGGGGCGGGCGTCAGCGCACTCTACTCCTTCTCCAACAAGCAGACCGAGC
ACATCGCCGCGGGCGGGGCCTTCACGAACCTCGCCAGGCGCATACGCTGC
CAACTGTTCCTGCCGAACCACCTCCGGGCGCAGGCCGAGGTGTGCCTCGT
TGACTTCGGCGCCGAACAGAGCCACCTCGTAAACACGTCTCCGCTCCTTT
AA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4973:2623..3324+

>mRNA_L-elsbetiae_contig4973.12954.1 ID=mRNA_L-elsbetiae_contig4973.12954.1|Name=mRNA_L-elsbetiae_contig4973.12954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1404bp|location=Sequence derived from alignment at L-elsbetiae_contig4973:2623..3324+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGGCGAGGAAAAGGAGGAGGAGGAGAAAGTCGAGGAGGTGGTGGG
CGTGGACGCCGAAAGCTTCGATTTCACCAACGACCTGTTTCGCAAGACGT
ACGGTTCCAACACCATGGACGACGCGCAGGCGCGCAACCAGACCAAACAA
AGACAGGCGTCGAGAGGATTCGTCAACGAGGGGCTAGAGGTTGCGACCAA
CGCGCGCCTGTCGCACTTCGAGAAAGAAAAGGTGTACGCGAACGAGTGGA
CGAACAGCTGTCTCAACGTCATCGAAGCGACCCTACTCGAATGCCAGAAG
GCCGCCGCCGCCCACATGGAAGCCACGCGGGCGTGCAGGCACAAACACAG
GATGATGAGCATCCCTTTAATCATCATCGGCACCGCCGCGACGGCGCTAT
CGTTCCTGTCCGCCGGCGCCACCTGCTCGTCGGAGGAAGACGACAGCAGC
GGCGAAGGCGTCAAGTACGTGGTGGCCGTCCTCACCTCGCTCGCGAGCGT
AGGGGCGGGCGTCAGCGCACTCTACTCCTTCTCCAACAAGCAGACCGAGC
ACATCGCCGCGGGCGGGGCCTTCACGAACCTCGCCAGGCGCATACGCTGC
CAACTGTTCCTGCCGAACCACCTCCGGGCGCAGGCCGAGGTGTGCCTCGT
TGACTTCGGCGCCGAACAGAGCCACCTCGTAAACACGTCTCCGCTCCTTT
AAATGTTCGGCGAGGAAAAGGAGGAGGAGGAGAAAGTCGAGGAGGTGGTG
GGCGTGGACGCCGAAAGCTTCGATTTCACCAACGACCTGTTTCGCAAGAC
GTACGGTTCCAACACCATGGACGACGCGCAGGCGCGCAACCAGACCAAAC
AAAGACAGGCGTCGAGAGGATTCGTCAACGAGGGGCTAGAGGTTGCGACC
AACGCGCGCCTGTCGCACTTCGAGAAAGAAAAGGTGTACGCGAACGAGTG
GACGAACAGCTGTCTCAACGTCATCGAAGCGACCCTACTCGAATGCCAGA
AGGCCGCCGCCGCCCACATGGAAGCCACGCGGGCGTGCAGGCACAAACAC
AGGATGATGAGCATCCCTTTAATCATCATCGGCACCGCCGCGACGGCGCT
ATCGTTCCTGTCCGCCGGCGCCACCTGCTCGTCGGAGGAAGACGACAGCA
GCGGCGAAGGCGTCAAGTACGTGGTGGCCGTCCTCACCTCGCTCGCGAGC
GTAGGGGCGGGCGTCAGCGCACTCTACTCCTTCTCCAACAAGCAGACCGA
GCACATCGCCGCGGGCGGGGCCTTCACGAACCTCGCCAGGCGCATACGCT
GCCAACTGTTCCTGCCGAACCACCTCCGGGCGCAGGCCGAGGTGTGCCTC
GTTGACTTCGGCGCCGAACAGAGCCACCTCGTAAACACGTCTCCGCTCCT
TTAA
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