mRNA_L-elsbetiae_contig4970.12950.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4970.12950.1
Unique NamemRNA_L-elsbetiae_contig4970.12950.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig4970.12950.1 vs. uniprot
Match: A0A2H9SHW6_9GAMM (Uncharacterized protein n=1 Tax=Legionella sp. TaxID=459 RepID=A0A2H9SHW6_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 6.390e-8
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    7 IDEVNSTGSTPLIAAALFRDSLVVRTLLDRGANVTIADHTGATALHMSANRGHLAVTELLLTAGADP 207
            +D+++  G TPLI AA+ R + + + LLDRG +V   D TG TALH + +   + +  LLL  GA+P
Sbjct:   25 LDDIDEYGFTPLIEAAITRQTTIAKLLLDRGVDVNKPDVTGRTALHWAVDNADIELIRLLLVKGANP 91          
BLAST of mRNA_L-elsbetiae_contig4970.12950.1 vs. uniprot
Match: A0A1L7CTJ2_9CORY (Uncharacterized protein n=2 Tax=Corynebacterium TaxID=1716 RepID=A0A1L7CTJ2_9CORY)

HSP 1 Score: 52.4 bits (124), Expect = 1.190e-6
Identity = 32/64 (50.00%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    4 GIDEVNSTGSTPLIAAALFRDSLVVRTLLDRGANVTIADHTGATALHMSANRGHLAVTELLLTA 195
            G+D   + G T L+ AA   +  V   LLDRGA+VT+AD  GATALH  A  G  AV E LL A
Sbjct:   40 GVDARTTDGRTALMLAAGRDNLFVAAALLDRGADVTLADVAGATALHHGARAGAEAVVEQLLAA 103          
BLAST of mRNA_L-elsbetiae_contig4970.12950.1 vs. uniprot
Match: D7FSU4_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSU4_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 3.420e-6
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   28 GSTPLIAAALFRDSLVVRTLLDRGANVTIADHTGATALHMSANRGHLAVTELLLTAGADPEV 213
            G T L+ A+    SL+VR LL +GA V+IAD  G + LH+S   GH+AVT+ L+ AGA  EV
Sbjct:   49 GWTALMIASHRGYSLIVRMLLSKGAQVSIADVHGDSGLHLSVLAGHMAVTKTLVEAGAPLEV 110          
BLAST of mRNA_L-elsbetiae_contig4970.12950.1 vs. uniprot
Match: A0A6V8R5P6_9HYPO (Ankyrin-3 n=1 Tax=Trichoderma asperellum TaxID=101201 RepID=A0A6V8R5P6_9HYPO)

HSP 1 Score: 52.0 bits (123), Expect = 5.280e-6
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   31 STPLIAAALFRDSLVVRTLLDRGANVTIADHTGATALHMSANRGHLAVTELLLTAGAD 204
            STPLI AA F  +  +RTLLD GA++ +AD  G TAL +SA RG +   E LL   AD
Sbjct: 1231 STPLINAAAFLPTTSLRTLLDAGADINLADEDGDTALIISAFRGDVEAVEFLLENDAD 1288          
BLAST of mRNA_L-elsbetiae_contig4970.12950.1 vs. uniprot
Match: A0A382CNA1_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382CNA1_9ZZZZ)

HSP 1 Score: 51.6 bits (122), Expect = 6.930e-6
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1
Query:   37 PLIAAALFRDSLV-VRTLLDRGANV-TIADHTGATALHMSANRGHLAVTELLLTAGAD 204
            P+ AAA +R+ +V VR  +D G N+ T+ D TG TALH +A  GHL +TELLL+ GA+
Sbjct:   27 PIWAAASWRNDIVTVRAHIDDGTNIDTVDDWTGKTALHYAAEYGHLEITELLLSNGAN 84          
BLAST of mRNA_L-elsbetiae_contig4970.12950.1 vs. uniprot
Match: A0A1H0H713_9BACL (Ankyrin repeat-containing protein n=1 Tax=Paenibacillus sp. yr247 TaxID=1761880 RepID=A0A1H0H713_9BACL)

HSP 1 Score: 51.2 bits (121), Expect = 8.860e-6
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    1 IGIDEVNSTGSTPLIAAALFRDSLVVRTLLDRGANVTIAD--HTGATALHMSANRGHLAVTELLLTAGADPEV 213
            + ++EVNS+G TPLI+AAL       + LL  GA V + D    G T L ++A+  +  + EL L AGADP +
Sbjct:  166 LDVNEVNSSGGTPLISAALGNSLSSAKILLSNGAKVNVQDGGKWGWTPLSLAASHHNKEMVELFLNAGADPNL 238          
BLAST of mRNA_L-elsbetiae_contig4970.12950.1 vs. uniprot
Match: H3HCM5_PHYRM (Lipase_3 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCM5_PHYRM)

HSP 1 Score: 51.2 bits (121), Expect = 9.510e-6
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 IGIDEVNSTGSTPLIAAALFRDSLVVRTLLDRGANVTIADH-TGATALHMSANRGHLAVTELLLTAGADPEV 213
            + ID     G+TPL AAAL+ + ++V  LLD+GA+V+  +  TG TALH ++ + H  V  +LL   ADP++
Sbjct:  240 VHIDTPGKDGTTPLCAAALWGNDMMVTCLLDKGADVSARNEGTGWTALHAASFQEHGKVVRILLDNQADPKM 311          
BLAST of mRNA_L-elsbetiae_contig4970.12950.1 vs. uniprot
Match: U4KW88_PYROM (Similar to Ankyrin repeat domain-containing protein 50 acc. no. Q9ULJ7 n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4KW88_PYROM)

HSP 1 Score: 51.2 bits (121), Expect = 9.610e-6
Identity = 24/62 (38.71%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    7 IDEVNSTGSTPLIAAALFRDSLVVRTLLDRGANVTIADHTGATALHMSANRGHLAVTELLLT 192
            +++ N+ G T +  AA++ D++V+ TL+ RGA+V I D    TALH++ANR  + + E L++
Sbjct:  354 LNQKNALGYTVMQLAAMYGDTIVLETLIKRGADVNIVDFNNLTALHLAANRHRIKIIEKLVS 415          
BLAST of mRNA_L-elsbetiae_contig4970.12950.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.310e-5
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    1 IGIDEVNSTGSTPLIAAALFRDSLVVRTLLDRGANVTIADHTGATALHMSANRGHL-AVTELLLTAGAD 204
            + ID+ NS G+TPL+ A     S + + L+ +GANV+IAD  G TALH    R    A+ +LL  AGAD
Sbjct:  130 VEIDQRNSYGATPLMMAVHNGHSRIAKMLIKKGANVSIADKRGFTALHFCCAREEDDAIVKLLAKAGAD 198          
BLAST of mRNA_L-elsbetiae_contig4970.12950.1 vs. uniprot
Match: UPI0019992969 (Ankyrin repeat domain-containing protein n=1 Tax=Fibrella sp. TaxID=1871320 RepID=UPI0019992969)

HSP 1 Score: 50.8 bits (120), Expect = 1.330e-5
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    7 IDEVNSTGSTPLIAAALFRDSLVVRTLLDRGANVTIAD-HTGATALHMSANRGHLAVTELLLTAGAD 204
            +D     G TPL AAA   D ++V+ LLD GA+      ++G +ALH++A  G  A+  LLL AGAD
Sbjct:  317 LDNKKPVGETPLTAAAKSNDPVIVKALLDAGADARYTHPYSGQSALHIAATYGSDAIIPLLLAAGAD 383          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4970.12950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2H9SHW6_9GAMM6.390e-841.79Uncharacterized protein n=1 Tax=Legionella sp. Tax... [more]
A0A1L7CTJ2_9CORY1.190e-650.00Uncharacterized protein n=2 Tax=Corynebacterium Ta... [more]
D7FSU4_ECTSI3.420e-650.00EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6V8R5P6_9HYPO5.280e-651.72Ankyrin-3 n=1 Tax=Trichoderma asperellum TaxID=101... [more]
A0A382CNA1_9ZZZZ6.930e-651.72Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A1H0H713_9BACL8.860e-641.10Ankyrin repeat-containing protein n=1 Tax=Paenibac... [more]
H3HCM5_PHYRM9.510e-641.67Lipase_3 domain-containing protein n=1 Tax=Phytoph... [more]
U4KW88_PYROM9.610e-638.71Similar to Ankyrin repeat domain-containing protei... [more]
D7FT11_ECTSI1.310e-544.93EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
UPI00199929691.330e-543.28Ankyrin repeat domain-containing protein n=1 Tax=F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4970contigL-elsbetiae_contig4970:10742..10954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog2880.D8LH66
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816497.657338-CDS-L-elsbetiae_contig4970:10741..109541622816497.657338-CDS-L-elsbetiae_contig4970:10741..10954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4970 10742..10954 +
1691683602.77174-CDS-L-elsbetiae_contig4970:10741..109541691683602.77174-CDS-L-elsbetiae_contig4970:10741..10954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4970 10742..10954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4970.12950.1prot_L-elsbetiae_contig4970.12950.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4970 10742..10954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4970.12950.1

>prot_L-elsbetiae_contig4970.12950.1 ID=prot_L-elsbetiae_contig4970.12950.1|Name=mRNA_L-elsbetiae_contig4970.12950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
IGIDEVNSTGSTPLIAAALFRDSLVVRTLLDRGANVTIADHTGATALHMS
ANRGHLAVTELLLTAGADPEV
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mRNA from alignment at L-elsbetiae_contig4970:10742..10954+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4970.12950.1 ID=mRNA_L-elsbetiae_contig4970.12950.1|Name=mRNA_L-elsbetiae_contig4970.12950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=213bp|location=Sequence derived from alignment at L-elsbetiae_contig4970:10742..10954+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGGCATCGATGAAGTCAACTCGACGGGCTCCACCCCTCTCATTGCCGC CGCCCTCTTCCGTGACTCGCTAGTTGTCAGGACCCTTCTGGACAGGGGAG CCAACGTGACGATAGCTGATCACACCGGGGCTACTGCTCTACACATGTCG GCTAACAGAGGACACCTGGCCGTGACGGAGCTGCTGTTGACGGCCGGCGC CGACCCGGAAGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4970:10742..10954+

>mRNA_L-elsbetiae_contig4970.12950.1 ID=mRNA_L-elsbetiae_contig4970.12950.1|Name=mRNA_L-elsbetiae_contig4970.12950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig4970:10742..10954+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGGCATCGATGAAGTCAACTCGACGGGCTCCACCCCTCTCATTGCCGC
CGCCCTCTTCCGTGACTCGCTAGTTGTCAGGACCCTTCTGGACAGGGGAG
CCAACGTGACGATAGCTGATCACACCGGGGCTACTGCTCTACACATGTCG
GCTAACAGAGGACACCTGGCCGTGACGGAGCTGCTGTTGACGGCCGGCGC
CGACCCGGAAGTGATCGGCATCGATGAAGTCAACTCGACGGGCTCCACCC
CTCTCATTGCCGCCGCCCTCTTCCGTGACTCGCTAGTTGTCAGGACCCTT
CTGGACAGGGGAGCCAACGTGACGATAGCTGATCACACCGGGGCTACTGC
TCTACACATGTCGGCTAACAGAGGACACCTGGCCGTGACGGAGCTGCTGT
TGACGGCCGGCGCCGACCCGGAAGTG
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