mRNA_L-elsbetiae_contig4970.12949.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4970.12949.1
Unique NamemRNA_L-elsbetiae_contig4970.12949.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4970.12949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4970contigL-elsbetiae_contig4970:310..865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size556
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816497.6140456-UTR-L-elsbetiae_contig4970:309..4631622816497.6140456-UTR-L-elsbetiae_contig4970:309..463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4970 310..463 +
1691683602.7499309-UTR-L-elsbetiae_contig4970:309..4631691683602.7499309-UTR-L-elsbetiae_contig4970:309..463Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4970 310..463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816497.6239636-CDS-L-elsbetiae_contig4970:463..8651622816497.6239636-CDS-L-elsbetiae_contig4970:463..865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4970 464..865 +
1691683602.7617862-CDS-L-elsbetiae_contig4970:463..8651691683602.7617862-CDS-L-elsbetiae_contig4970:463..865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4970 464..865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4970.12949.1prot_L-elsbetiae_contig4970.12949.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4970 464..865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4970.12949.1

>prot_L-elsbetiae_contig4970.12949.1 ID=prot_L-elsbetiae_contig4970.12949.1|Name=mRNA_L-elsbetiae_contig4970.12949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MPFDFQSHSLSPATNPSAATLHCAHNNHPRLSTVNLAETPYIARPLQPGA
PHSLVACVVEQCRHLVKKLCLVLQRFRTKLPPKISHCPLSVFFVENTSPY
SDSKLLDMRSTICQLLYFAPGGSCLERLPYHFHR
back to top

mRNA from alignment at L-elsbetiae_contig4970:310..865+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4970.12949.1 ID=mRNA_L-elsbetiae_contig4970.12949.1|Name=mRNA_L-elsbetiae_contig4970.12949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=556bp|location=Sequence derived from alignment at L-elsbetiae_contig4970:310..865+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTGTTCGTTCTCGTCCGGTGGACAAAACGTATCATACTTATCATCGGA
AACTAACGCATTTTATTTTGAGACCTATGCGCCCCCTGTCCTCTGCTCGA
AACCCCGCGGCTACTACGATACGCCGTGCCTGTCCACTGCTACTATAATA
CCGCATGCCTTTTGACTTCCAATCACACTCCCTGTCTCCTGCTACAAACC
CCTCCGCTGCTACACTGCATTGTGCCCATAACAATCATCCGCGTTTGTCT
ACCGTCAACCTCGCGGAAACACCCTACATAGCCCGACCCCTACAACCAGG
TGCCCCACATTCCCTTGTTGCATGCGTTGTTGAACAGTGCCGTCATCTTG
TGAAAAAGCTTTGTCTTGTCTTGCAGCGCTTTCGAACCAAACTCCCCCCC
AAAATAAGTCACTGCCCACTCTCGGTGTTCTTTGTTGAAAACACCAGCCC
TTACAGCGACTCGAAGCTGCTGGATATGCGATCCACCATTTGCCAACTTC
TTTATTTCGCTCCCGGGGGCTCCTGCCTTGAACGCCTCCCGTATCATTTT
CACCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig4970:310..865+

>mRNA_L-elsbetiae_contig4970.12949.1 ID=mRNA_L-elsbetiae_contig4970.12949.1|Name=mRNA_L-elsbetiae_contig4970.12949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig4970:310..865+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTTTTGACTTCCAATCACACTCCCTGTCTCCTGCTACAAACCCCTC
CGCTGCTACACTGCATTGTGCCCATAACAATCATCCGCGTTTGTCTACCG
TCAACCTCGCGGAAACACCCTACATAGCCCGACCCCTACAACCAGGTGCC
CCACATTCCCTTGTTGCATGCGTTGTTGAACAGTGCCGTCATCTTGTGAA
AAAGCTTTGTCTTGTCTTGCAGCGCTTTCGAACCAAACTCCCCCCCAAAA
TAAGTCACTGCCCACTCTCGGTGTTCTTTGTTGAAAACACCAGCCCTTAC
AGCGACTCGAAGCTGCTGGATATGCGATCCACCATTTGCCAACTTCTTTA
TTTCGCTCCCGGGGGCTCCTGCCTTGAACGCCTCCCGTATCATTTTCACC
GCATGCCTTTTGACTTCCAATCACACTCCCTGTCTCCTGCTACAAACCCC
TCCGCTGCTACACTGCATTGTGCCCATAACAATCATCCGCGTTTGTCTAC
CGTCAACCTCGCGGAAACACCCTACATAGCCCGACCCCTACAACCAGGTG
CCCCACATTCCCTTGTTGCATGCGTTGTTGAACAGTGCCGTCATCTTGTG
AAAAAGCTTTGTCTTGTCTTGCAGCGCTTTCGAACCAAACTCCCCCCCAA
AATAAGTCACTGCCCACTCTCGGTGTTCTTTGTTGAAAACACCAGCCCTT
ACAGCGACTCGAAGCTGCTGGATATGCGATCCACCATTTGCCAACTTCTT
TATTTCGCTCCCGGGGGCTCCTGCCTTGAACGCCTCCCGTATCATTTTCA
CCGC
back to top