mRNA_L-elsbetiae_contig497.12947.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig497.12947.1
Unique NamemRNA_L-elsbetiae_contig497.12947.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig497.12947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig497contigL-elsbetiae_contig497:50..564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816497.079872-CDS-L-elsbetiae_contig497:49..4721622816497.079872-CDS-L-elsbetiae_contig497:49..472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig497 50..472 +
1691683602.2915318-CDS-L-elsbetiae_contig497:49..4721691683602.2915318-CDS-L-elsbetiae_contig497:49..472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig497 50..472 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816497.0904555-UTR-L-elsbetiae_contig497:472..5641622816497.0904555-UTR-L-elsbetiae_contig497:472..564Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig497 473..564 +
1691683602.3012342-UTR-L-elsbetiae_contig497:472..5641691683602.3012342-UTR-L-elsbetiae_contig497:472..564Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig497 473..564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig497.12947.1prot_L-elsbetiae_contig497.12947.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig497 50..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig497.12947.1

>prot_L-elsbetiae_contig497.12947.1 ID=prot_L-elsbetiae_contig497.12947.1|Name=mRNA_L-elsbetiae_contig497.12947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
SVYLDQEPTPRLLREDWRSPADLRSLLCRFQQQYHPAGYRLTPRCSVSAL
ARRDQSTCLAGLRGSLRLLGAFLLRAALPRFLEPCHRCLPFPNGLSLEGR
TRRHTSVLTIYLCPLLEKERSSLSHVLEMQSSRERARKEE*
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mRNA from alignment at L-elsbetiae_contig497:50..564+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig497.12947.1 ID=mRNA_L-elsbetiae_contig497.12947.1|Name=mRNA_L-elsbetiae_contig497.12947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=515bp|location=Sequence derived from alignment at L-elsbetiae_contig497:50..564+ (Laminarionema elsbetiae ELsaHSoW15)
TCTGTCTATCTTGACCAAGAACCGACCCCGCGCCTGCTGCGGGAGGATTG
GAGATCACCTGCCGATCTTCGCTCCTTGCTGTGTCGTTTCCAGCAGCAGT
ACCATCCTGCTGGGTACCGCCTGACTCCTCGCTGCTCCGTGTCAGCACTT
GCTCGACGAGACCAGTCAACCTGTCTAGCTGGTTTGCGAGGGAGTTTACG
TCTGCTCGGAGCATTTTTGCTTCGAGCAGCTCTCCCTCGATTTCTCGAGC
CCTGTCATCGTTGTCTCCCATTCCCTAATGGACTCTCCCTCGAGGGACGA
ACAAGACGACACACTAGTGTGTTGACGATATATCTATGTCCTTTACTTGA
GAAGGAGAGATCGAGTTTATCACATGTATTAGAGATGCAGAGCTCCAGAG
AGAGAGCACGGAAAGAGGAGTGACCGAGTGGCCCTTCAAACAAAAAAGGG
GACACCGTACTCAATACCGCTTGGTATGGGTATCTACGTTCCTATCTGCG
TATACATATCCATCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig497:50..564+

>mRNA_L-elsbetiae_contig497.12947.1 ID=mRNA_L-elsbetiae_contig497.12947.1|Name=mRNA_L-elsbetiae_contig497.12947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig497:50..564+ (Laminarionema elsbetiae ELsaHSoW15)
TCTGTCTATCTTGACCAAGAACCGACCCCGCGCCTGCTGCGGGAGGATTG
GAGATCACCTGCCGATCTTCGCTCCTTGCTGTGTCGTTTCCAGCAGCAGT
ACCATCCTGCTGGGTACCGCCTGACTCCTCGCTGCTCCGTGTCAGCACTT
GCTCGACGAGACCAGTCAACCTGTCTAGCTGGTTTGCGAGGGAGTTTACG
TCTGCTCGGAGCATTTTTGCTTCGAGCAGCTCTCCCTCGATTTCTCGAGC
CCTGTCATCGTTGTCTCCCATTCCCTAATGGACTCTCCCTCGAGGGACGA
ACAAGACGACACACTAGTGTGTTGACGATATATCTATGTCCTTTACTTGA
GAAGGAGAGATCGAGTTTATCACATGTATTAGAGATGCAGAGCTCCAGAG
AGAGAGCACGGAAAGAGGAGTGATCTGTCTATCTTGACCAAGAACCGACC
CCGCGCCTGCTGCGGGAGGATTGGAGATCACCTGCCGATCTTCGCTCCTT
GCTGTGTCGTTTCCAGCAGCAGTACCATCCTGCTGGGTACCGCCTGACTC
CTCGCTGCTCCGTGTCAGCACTTGCTCGACGAGACCAGTCAACCTGTCTA
GCTGGTTTGCGAGGGAGTTTACGTCTGCTCGGAGCATTTTTGCTTCGAGC
AGCTCTCCCTCGATTTCTCGAGCCCTGTCATCGTTGTCTCCCATTCCCTA
ATGGACTCTCCCTCGAGGGACGAACAAGACGACACACTAGTGTGTTGACG
ATATATCTATGTCCTTTACTTGAGAAGGAGAGATCGAGTTTATCACATGT
ATTAGAGATGCAGAGCTCCAGAGAGAGAGCACGGAAAGAGGAGTGA
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