mRNA_L-elsbetiae_contig4966.12944.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4966.12944.1
Unique NamemRNA_L-elsbetiae_contig4966.12944.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4966.12944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4966contigL-elsbetiae_contig4966:9716..10107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size392
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816496.7543476-UTR-L-elsbetiae_contig4966:9715..97261622816496.7543476-UTR-L-elsbetiae_contig4966:9715..9726Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4966 9716..9726 +
1691683602.074949-UTR-L-elsbetiae_contig4966:9715..97261691683602.074949-UTR-L-elsbetiae_contig4966:9715..9726Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4966 9716..9726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816496.7655602-CDS-L-elsbetiae_contig4966:9726..101071622816496.7655602-CDS-L-elsbetiae_contig4966:9726..10107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4966 9727..10107 +
1691683602.094007-CDS-L-elsbetiae_contig4966:9726..101071691683602.094007-CDS-L-elsbetiae_contig4966:9726..10107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4966 9727..10107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4966.12944.1prot_L-elsbetiae_contig4966.12944.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4966 9727..10107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4966.12944.1

>prot_L-elsbetiae_contig4966.12944.1 ID=prot_L-elsbetiae_contig4966.12944.1|Name=mRNA_L-elsbetiae_contig4966.12944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MSRCWPGCLGEEEEEEGCRSRAGRRSTGGLATPLAPVRSAGRLVPGWRSA
AGSAVAAAVGGGAGAPAPRPLAGRACRLDQRARRSPGTKTTIMTAAAAVQ
HPPSVRQPAAAAALSRLRFSRRARRQQ
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mRNA from alignment at L-elsbetiae_contig4966:9716..10107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4966.12944.1 ID=mRNA_L-elsbetiae_contig4966.12944.1|Name=mRNA_L-elsbetiae_contig4966.12944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=392bp|location=Sequence derived from alignment at L-elsbetiae_contig4966:9716..10107+ (Laminarionema elsbetiae ELsaHSoW15)
CATCCCCACCAATGAGCCGTTGCTGGCCGGGCTGTCTTGGGGAGGAGGAG
GAGGAGGAGGGTTGCCGATCGCGCGCAGGGCGTCGGTCAACCGGGGGCCT
AGCGACCCCGCTGGCACCAGTACGGTCAGCTGGGAGATTAGTTCCAGGGT
GGCGGAGTGCTGCTGGCTCTGCGGTGGCGGCGGCGGTGGGTGGTGGTGCC
GGCGCTCCGGCGCCGAGGCCGCTGGCGGGGAGGGCTTGCCGCCTTGACCA
GCGGGCGCGCCGTTCGCCGGGAACGAAGACGACGATAATGACGGCGGCGG
CGGCGGTGCAGCACCCGCCTTCTGTACGCCAGCCGGCGGCGGCGGCCGCG
CTCTCGAGGCTGCGCTTCTCGCGGAGGGCTCGACGGCAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4966:9716..10107+

>mRNA_L-elsbetiae_contig4966.12944.1 ID=mRNA_L-elsbetiae_contig4966.12944.1|Name=mRNA_L-elsbetiae_contig4966.12944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig4966:9716..10107+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCCGTTGCTGGCCGGGCTGTCTTGGGGAGGAGGAGGAGGAGGAGGG
TTGCCGATCGCGCGCAGGGCGTCGGTCAACCGGGGGCCTAGCGACCCCGC
TGGCACCAGTACGGTCAGCTGGGAGATTAGTTCCAGGGTGGCGGAGTGCT
GCTGGCTCTGCGGTGGCGGCGGCGGTGGGTGGTGGTGCCGGCGCTCCGGC
GCCGAGGCCGCTGGCGGGGAGGGCTTGCCGCCTTGACCAGCGGGCGCGCC
GTTCGCCGGGAACGAAGACGACGATAATGACGGCGGCGGCGGCGGTGCAG
CACCCGCCTTCTGTACGCCAGCCGGCGGCGGCGGCCGCGCTCTCGAGGCT
GCGCTTCTCGCGGAGGGCTCGACGGCAGCAGATGAGCCGTTGCTGGCCGG
GCTGTCTTGGGGAGGAGGAGGAGGAGGAGGGTTGCCGATCGCGCGCAGGG
CGTCGGTCAACCGGGGGCCTAGCGACCCCGCTGGCACCAGTACGGTCAGC
TGGGAGATTAGTTCCAGGGTGGCGGAGTGCTGCTGGCTCTGCGGTGGCGG
CGGCGGTGGGTGGTGGTGCCGGCGCTCCGGCGCCGAGGCCGCTGGCGGGG
AGGGCTTGCCGCCTTGACCAGCGGGCGCGCCGTTCGCCGGGAACGAAGAC
GACGATAATGACGGCGGCGGCGGCGGTGCAGCACCCGCCTTCTGTACGCC
AGCCGGCGGCGGCGGCCGCGCTCTCGAGGCTGCGCTTCTCGCGGAGGGCT
CGACGGCAGCAG
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