mRNA_L-elsbetiae_contig4965.12941.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig4965.12941.1 vs. uniprot
Match: A0A6H5JQ29_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ29_9PHAE) HSP 1 Score: 556 bits (1434), Expect = 1.700e-182 Identity = 384/594 (64.65%), Postives = 411/594 (69.19%), Query Frame = 3 Query: 3 ALSSDNVLLALSALMCERPVLVTCSVRSLLSVAASSLKALLHPLGWHHAYAPLLPAAEVVGFWRSKVALDKKVALSQGRSGSPPRIAPGSWGARGHGARXXXXXXXXXXXXXXXPPPRAGPQ-TPFLVGLDAELVRMATGKATDGGGSAGGARRQGAKAGVGVGGSGTGEVWGVASSESCMVPAGAEQ-AGSSGMATTQPSPTLLEVVRRMLKQSVHVDLDHDEVTWPDP----PATSPGVEGGMMSKADSLGFEKEREXXXXXXXXXAPGAGRRD--------APPAWPEEAARRARRVVQSTLFPEFESFDGVFEAPPEAIGGADFDDD---SALFKCSGLSGGGAEASLRDKIEASRLSASALTPPRENLGGGAATGAGTTLTESIVGMYIPTPADLALRAAAAGLVASVLGRVKEFTTLFAQAGLMRFDTARFVTAVASRNSSGGKNLAAANTGNPDFFGXXXAAESATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNASGSGTATAKDESAPVVVGEAG-DDGSSAEGGGEGSRLWGVPGTEMCLELVRTRAFAALLSDEVFADVDLETVQEELRLHSRQIRKSTSS 1730 ALSSDNVLLALSALMCERPVLVTCSVRSLLS+A SSLKALLHPL WHHAYAPLLPAAEVV FWRSKVALDKK AL+ GRSGSPPRI PGSWGA G G R XXXX PPP + TPFLVGLD ELVRMA R G GGSG G VWGVASSE CMVP GAE+ AG+SG+ATTQPSP LLEVVR ++KQSVHVDLDHD++TWP P P+T+ SK DSLG KE++ X G P WPEEAARRARRVVQSTLFP+FE+FD V E PP+ DFD SALFKCSGLSGGGAEASLRDK+EA R SA+A + R + GGA TLTESIVGMYIPT ADLALRAA AGLVASVLGRVKEFTTLFAQAGLMRFDTA FV AVA+R GG A GN G XXXXXXXXXXXXXXXXXXXXX + T DE+APVVVG A DDG+ AEG G L GVPGTE+C+ELVRTRAFAALLSDEVFADVDLETVQ ELRLHSRQIRKS S Sbjct: 440 ALSSDNVLLALSALMCERPVLVTCSVRSLLSLAVSSLKALLHPLDWHHAYAPLLPAAEVVSFWRSKVALDKKTALNHGRSGSPPRITPGSWGASGRGGRGSPGXXXX-------PPPTPRVRATPFLVGLDGELVRMAM--------------RNG-------GGSGKGVVWGVASSEPCMVPEGAEEEAGASGIATTQPSPALLEVVRCIVKQSVHVDLDHDDITWPPPQAPDPSTAXXXXXXXXSKTDSLGSGKEKKKGXEEAAGATGDEGXXXXXXXXXVGVPLVWPEEAARRARRVVQSTLFPDFETFDVVSETPPQVD---DFDXXXXXSALFKCSGLSGGGAEASLRDKVEACRTSAAAASASRRGISGGAG-----TLTESIVGMYIPTAADLALRAAVAGLVASVLGRVKEFTTLFAQAGLMRFDTAGFVKAVATRGIGGGSKTDAGG-GNSVLVGSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------SNTVDDEAAPVVVGAAAVDDGNVAEGAGGEGGLCGVPGTELCMELVRTRAFAALLSDEVFADVDLETVQGELRLHSRQIRKSAPS 982
BLAST of mRNA_L-elsbetiae_contig4965.12941.1 vs. uniprot
Match: D8LDP3_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP3_ECTSI) HSP 1 Score: 520 bits (1340), Expect = 7.400e-164 Identity = 388/585 (66.32%), Postives = 411/585 (70.26%), Query Frame = 3 Query: 3 ALSSDNVLLALSALMCERPVLVTCSVRSLLSVAASSLKALLHPLGWHHAYAPLLPAAEVVGFWRSKVALDKKVALSQGRSGSPPRIAPGSWGARGHGARXXXXXXXXXXXXXXXPPPRAGPQTPFLVGLDAELVRMATGKATDGGGSAGGARRQGAKAGVGVGGSGTGEVWGVASSESCMVPAGAEQ-AGSSGMATTQPSPTLLEVVRRMLKQSVHVDLDHDEVTWPDP--PATSPGVEG--GMMSKADSLGFEKEREXXXXXXXXXAPGAGRRD---APPAWPEEAARRARRVVQSTLFPEFESFDGVFEAPPEAIGGADFDDDSALFKCSGLSGGGAEASLRDKIEASRLSASALTPPRENLGGGAATGAGTTLTESIVGMYIPTPADLALRAAAAGLVASVLGRVKEFTTLFAQAGLMRFDTARFVTAVASRNSSGGKNLAAANTGNPDFFGXXXAAESATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNASGSGTATAKDESAPVVVGEAG-DDGSSAEGGGEGSRLWGVPGTEMCLELVRTRAFAALLSDEVFADVDLETVQEELRLHSRQIRKSTSS 1730 ALSSDNVLLALSALMCERPVLVTCSVRSLLS+A SSLKALLHPL WHHAYAPLLPAAEV ALDKK AL+ G SGSPPR+ PGSWG G G R XXXXXXXXX P RA TPFLVGLD ELVRMA K GGGS +G KAG +G GEVWGVASSE+CMVP GAE+ AG+SG+ATTQPSP LLEVVR M+KQSVHVDLDHD++TWP P P T P EG G +K DSLG KE XXXXXXXXX APP WPEEAARRARRVV+STLFP+FE+FD V + D DDDSALFKCSGLSGGG EASLRDK+EA R SA+A + PR + GGA TLTESIVGMYIPT ADLALRAA AGLVASVLGRVKEFTTLFAQAGLMRFDTA FV AVA GG A GXXX XXXXXXXXXXXXX XXXXX PVVVG A DDGS AEG G L GVPGTE+C+ELVRTRAFAALLSDEVFADVDLETVQ ELRLHSRQIRKS S Sbjct: 907 ALSSDNVLLALSALMCERPVLVTCSVRSLLSLAVSSLKALLHPLDWHHAYAPLLPAAEV--------ALDKKTALNHGGSGSPPRLTPGSWGPSGRGGRGSPGXXXXXXXXXT-PRVRA---TPFLVGLDGELVRMAMRK---GGGSG-----KGVKAGP----AGPGEVWGVASSEACMVPEGAEEEAGASGIATTQPSPALLEVVRCMVKQSVHVDLDHDDITWPPPQAPDTPPAEEGEGGGTAKTDSLGSGKEXXXXXXXXXXXXXXXXXXXXVGAPPVWPEEAARRARRVVKSTLFPDFETFDVVDDL--------DXDDDSALFKCSGLSGGGVEASLRDKVEACRTSAAAASAPRRGVSGGAG-----TLTESIVGMYIPTTADLALRAAVAGLVASVLGRVKEFTTLFAQAGLMRFDTAGFVKAVAI--CGGGSKTDA---------GXXXXXXXXXXXXXXXXXXXXXXXTGSAPSGVSEXXXXXXXXXXXXXXXXXXXXXPVVVGAAAVDDGSVAEGAGGEGGLCGVPGTELCMELVRTRAFAALLSDEVFADVDLETVQGELRLHSRQIRKSAPS 1443 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4965.12941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4965.12941.1 >prot_L-elsbetiae_contig4965.12941.1 ID=prot_L-elsbetiae_contig4965.12941.1|Name=mRNA_L-elsbetiae_contig4965.12941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=563bp MCERPVLVTCSVRSLLSVAASSLKALLHPLGWHHAYAPLLPAAEVVGFWRback to top mRNA from alignment at L-elsbetiae_contig4965:1222..12390- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig4965.12941.1 ID=mRNA_L-elsbetiae_contig4965.12941.1|Name=mRNA_L-elsbetiae_contig4965.12941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11169bp|location=Sequence derived from alignment at L-elsbetiae_contig4965:1222..12390- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig4965:1222..12390- >mRNA_L-elsbetiae_contig4965.12941.1 ID=mRNA_L-elsbetiae_contig4965.12941.1|Name=mRNA_L-elsbetiae_contig4965.12941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3378bp|location=Sequence derived from alignment at L-elsbetiae_contig4965:1222..12390- (Laminarionema elsbetiae ELsaHSoW15)back to top |