mRNA_L-elsbetiae_contig4963.12939.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4963.12939.1
Unique NamemRNA_L-elsbetiae_contig4963.12939.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4963.12939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4963contigL-elsbetiae_contig4963:9361..12591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size807
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4963.12939.1prot_L-elsbetiae_contig4963.12939.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4963 9429..12386 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816496.3250933-UTR-L-elsbetiae_contig4963:9360..94281622816496.3250933-UTR-L-elsbetiae_contig4963:9360..9428Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4963 9361..9428 +
1691683601.7381604-UTR-L-elsbetiae_contig4963:9360..94281691683601.7381604-UTR-L-elsbetiae_contig4963:9360..9428Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4963 9361..9428 +
1622816496.378408-UTR-L-elsbetiae_contig4963:12386..125911622816496.378408-UTR-L-elsbetiae_contig4963:12386..12591Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4963 12387..12591 +
1691683601.7957854-UTR-L-elsbetiae_contig4963:12386..125911691683601.7957854-UTR-L-elsbetiae_contig4963:12386..12591Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4963 12387..12591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816496.3355563-CDS-L-elsbetiae_contig4963:9428..94431622816496.3355563-CDS-L-elsbetiae_contig4963:9428..9443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4963 9429..9443 +
1691683601.750958-CDS-L-elsbetiae_contig4963:9428..94431691683601.750958-CDS-L-elsbetiae_contig4963:9428..9443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4963 9429..9443 +
1622816496.3476722-CDS-L-elsbetiae_contig4963:10472..106031622816496.3476722-CDS-L-elsbetiae_contig4963:10472..10603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4963 10473..10603 +
1691683601.7617195-CDS-L-elsbetiae_contig4963:10472..106031691683601.7617195-CDS-L-elsbetiae_contig4963:10472..10603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4963 10473..10603 +
1622816496.3580203-CDS-L-elsbetiae_contig4963:11266..113591622816496.3580203-CDS-L-elsbetiae_contig4963:11266..11359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4963 11267..11359 +
1691683601.772426-CDS-L-elsbetiae_contig4963:11266..113591691683601.772426-CDS-L-elsbetiae_contig4963:11266..11359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4963 11267..11359 +
1622816496.36846-CDS-L-elsbetiae_contig4963:12091..123861622816496.36846-CDS-L-elsbetiae_contig4963:12091..12386Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4963 12092..12386 +
1691683601.784029-CDS-L-elsbetiae_contig4963:12091..123861691683601.784029-CDS-L-elsbetiae_contig4963:12091..12386Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4963 12092..12386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4963.12939.1

>prot_L-elsbetiae_contig4963.12939.1 ID=prot_L-elsbetiae_contig4963.12939.1|Name=mRNA_L-elsbetiae_contig4963.12939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
MSKRQAAEAAWQARVDIVTARWAKDLADKTCFARIGGGRRDREQDPPDAS
AKALRPIPTKVATPAQSETAGLKGKRSASSSTLLDGVLPPSSPSSLPTPT
PTPTPTPTPTPQTTGISRTLGTLGGSASMGRLNFHNVAEENPWERKHRME
RAIRRRDAGMRAKGLAINSSRESFQRT*
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mRNA from alignment at L-elsbetiae_contig4963:9361..12591+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4963.12939.1 ID=mRNA_L-elsbetiae_contig4963.12939.1|Name=mRNA_L-elsbetiae_contig4963.12939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3231bp|location=Sequence derived from alignment at L-elsbetiae_contig4963:9361..12591+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCTCCTGGCCTGGAAGCCTTTGTCGTGCGGGGGGGCATCAGCAGAGGA
GGGACAGCCGCCGGGGGTATGTCCAAGAGACAGGTGACGTGCTGAGCCGC
TTTTAGCGGTGATTGCGAGACAAGACAAGAGCAGGATAGAGCAGATGCGT
TGCGACAGTAGAAGGGGGCATTCCACAGGGTGCACACATCTATGCGAGAA
GGAGCCGGTTACCGATTGGAATGAAAATCGCGGCAAACATGAATTTTGTA
CTCTAGACCAGATAGTCTATGTAATATGGGCAAAAAGTAAATAATCTTAT
CGTTGTAGAGCCCGTCCACACAAAACAAAGGGGGGATTGATTGTAGTCCT
TGATTCAAAATATTGATTTGGTTAAAACCGTGCCCTTCTCGTTCTGCGCG
CCCTCTGTTCCAAGCGTTATGCTTCGGAAGGATTATTTGACAAATAATTG
ACTGGCCCTTCGGCGGCAACAGCAGTGCTTGGACGGGTTGCGCCTCCTAC
GGATTGGAGTCCCTTTGAACAGGTTTACGAAGTATTTATCTAGTCTACAC
AATGGATGGCCACCTGAGGTGTGTTTTCGAACACGCGCTTTCGGGAGGAA
GAGAAGCGGCGTTTGCCTTGCTGGCGAACGAACACTTGGCACTAACGGTG
CTGGCTGGTACATTTTGTTTTTTGTTTTGTTTCTCCTCCCATCATTGGCT
TATTCGTCGTTTGCCCCACTGGCCCCCTTCCTCCACTACGACTATGGCAA
GGCGACCCAACCGGGGTCACGCAGGAGGGGGGGTTAGACCCTCTCCTACG
GTGCCTGCCTGTGATGTTTTTATCGCGAGCAGGGTTCAGCACTCCCCACC
CGCGTCAACAATGAAGTCGAAAAGTAGGAGTATTATTTACTAACGGGATC
GCTTTCGATTTTTCCAGGATCGAAGTGAGAAAAAAAAATGTACATTATGG
CACAACTAATATCAAACGTCGGCTGTGTATCTTTCGAGCTCGCTTGAGTA
TCGGTGTCGTAGACTTCTCCATTCTTCACAGAAAGAAGTAAATACAATTG
AAACCCCAACATTGACCACCACTCCCGCCTCGGTGTTTGCTGCATGGGTT
TGTGCTGCTAAGGCCGCGGAGGCAGCTTGGCAGGCAAGAGTTGATATTGT
CACTGCGCGGTGGGCTAAAGACCTAGCTGACAAGACTTGTTTTGCGCGGA
TCGGAGGCGGACGACGAGATCGAGAGCAAGATCCGCCTGACGCGTGAGTG
GCATTGAACCTCGAGGGCCTCCACCACCCCCGCACGTGCCCTGTACGTAT
CACGTTAACGTTTGTCTGCCCCAGCTTTGGCTCTGTGCGACGTGAAATAC
TGCATCGCTGCCAAGCGCCCGTACGCCCTCAAGTGACAGAAGTGGAACCA
AACTCTTAAAGCTGATATCCGAGATTTGCAATATACATGGCGATATCGGT
GATGTCGGTGGTTCGGTGGGGTTACGACAGTGGGCGTTGTATTTGTTTCT
TTGCAAATCAATAAAAGGTCTCGCGACTGTGGCCACCCAAGACCAAGCTA
TAGCATGTTGCACAGTAGGGCATATATGCTGTGACTTGAGTTCTTCAAGG
GCTGTCTGTCCCTCTCGGCACTCGTGCATGTAAGTAAATAGATAGCTGGT
CTCGCGAAGAGCCCGCGATGGCCGCTTGCAACACTACACTTCACCCTCGG
ATCCTCGTAAATCGCATACTCCGAGTATGTAATTTAGCTCGAGGCTGACC
ATGGAAACAAATCGAGTGAGCAGAAGTTCATAAAAACAGAAAGAGGCGTG
CTCGTTTTGTGTCGTTAAAAATGTGACGTGGCGGTCAAAGCGTTTGGCCT
CGCCGTCTCCCATGGTACCACTTGCTCTGCTTCCTGGTCGTTGATGCCGT
GCACAGGTCCGCGAAAGCGCTGCGACCTATACCGACCAAGGTAGCCACGC
CGGCGCAGAGCGAGACGGCGGGATTGAAGGGGAAGCGATCCGCATCCTCG
TGAGAATTGCCACCCATCCTTTTTTGTTTTACAGAATAGGCTCCGTCTGT
GCACTACCGGCTTTTCTTGGCCTCGTTGTTCTCCCTTCACCGTTTTTTGA
ATCAGCTTTTGTTGACGTCCTCCCATTTATTGGATTATTCGTCGTCTGCC
CCACTGGCCCCCTTCCTCCACTACGACTATGGCAAGGCGACCCAACCGGG
GTCGCACAGGAGGGGGGGAGTGGACTCCCTCCTGTGGCGCCTGCCTGTTT
TGTTTTTATCGCGAGCAGGGTTCAGCACTCCCCACCCTCGTCAACAATGA
AGTCGAAGTATTACTTACTAAAAGCAGTGTAAGCTCACTCCTCTCTCAAA
TCCGAGGGAATGCGCCTCACCGAAAAAAACATGTCTTCCTGTATCTAGAT
ATCTGTGCCTACAGAGGCTCCCACGAAGGGTGCGTACGGTTGCGAAACGA
TGGTCAGCTTGAGCTTTTTGCGAAGCAGAAGTGGCAACCAGCGCCAACAA
GGAAACACACACGCTTCGCACGTTGCGCTTCTCCTTCCATGGTTGCGTGT
TCCGCTGCTTCGGACTATATCGCCGGCACCACGTTTATGTTGATCATCGT
CTGCCGTTCGTGGTGAAATCAACCAATCAATCGTGGACAGTGAGTAAGAG
GTGGCATCTGGAATGAATGAATGTGCCTTCAGACACCGAACACTACTGTT
TCCTATGTGCTCCCAACGGGAACCCTTGCAGGTCGACCCTGCTGGATGGA
GTCCTACCGCCATCATCCCCATCATCGCTACCAACGCCAACGCCAACGCC
AACGCCAACGCCAACGCCAACGCCCCAGACCACAGGCATCAGCAGGACCT
TGGGCACGCTGGGTGGTAGTGCCTCGATGGGGCGATTGAACTTCCACAAT
GTCGCCGAGGAGAACCCATGGGAGAGGAAGCACCGCATGGAGAGAGCCAT
ACGGCGCAGGGATGCGGGCATGAGAGCCAAGGGTCTCGCGATCAACAGCA
GTCGGGAATCATTCCAAAGGACGTGAACCTCACAACGCAAGGAGTGGTGG
AACAAGAGTGATAACCACTTACTCAAGTATATAGAAAACAGGAAACATCA
ACATAGGCAAGTCTATCTTGCTGGACCAGAGACAAGGATGCCCGAGAAGC
ACCGTTGGAAAACGGCGAATTGATACACAGAGGGCTCATTGCTCCTACTA
CATAGACGAAACAAATGAAATCGAATCGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4963:9361..12591+

>mRNA_L-elsbetiae_contig4963.12939.1 ID=mRNA_L-elsbetiae_contig4963.12939.1|Name=mRNA_L-elsbetiae_contig4963.12939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig4963:9361..12591+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCAAGAGACAGATGTCCAAGAGACAGGCCGCGGAGGCAGCTTGGCA
GGCAAGAGTTGATATTGTCACTGCGCGGTGGGCTAAAGACCTAGCTGACA
AGACTTGTTTTGCGCGGATCGGAGGCGGACGACGAGATCGAGAGCAAGAT
CCGCCTGACGCGCCGCGGAGGCAGCTTGGCAGGCAAGAGTTGATATTGTC
ACTGCGCGGTGGGCTAAAGACCTAGCTGACAAGACTTGTTTTGCGCGGAT
CGGAGGCGGACGACGAGATCGAGAGCAAGATCCGCCTGACGCGTCCGCGA
AAGCGCTGCGACCTATACCGACCAAGGTAGCCACGCCGGCGCAGAGCGAG
ACGGCGGGATTGAAGGGGAAGCGATCCGCATCCTCGTCCGCGAAAGCGCT
GCGACCTATACCGACCAAGGTAGCCACGCCGGCGCAGAGCGAGACGGCGG
GATTGAAGGGGAAGCGATCCGCATCCTCGTCGACCCTGCTGGATGGAGTC
CTACCGCCATCATCCCCATCATCGCTACCAACGCCAACGCCAACGCCAAC
GCCAACGCCAACGCCAACGCCCCAGACCACAGGCATCAGCAGGACCTTGG
GCACGCTGGGTGGTAGTGCCTCGATGGGGCGATTGAACTTCCACAATGTC
GCCGAGGAGAACCCATGGGAGAGGAAGCACCGCATGGAGAGAGCCATACG
GCGCAGGGATGCGGGCATGAGAGCCAAGGGTCTCGCGATCAACAGCAGTC
GGGAATCATTCCAAAGGACGTGAGTCGACCCTGCTGGATGGAGTCCTACC
GCCATCATCCCCATCATCGCTACCAACGCCAACGCCAACGCCAACGCCAA
CGCCAACGCCAACGCCCCAGACCACAGGCATCAGCAGGACCTTGGGCACG
CTGGGTGGTAGTGCCTCGATGGGGCGATTGAACTTCCACAATGTCGCCGA
GGAGAACCCATGGGAGAGGAAGCACCGCATGGAGAGAGCCATACGGCGCA
GGGATGCGGGCATGAGAGCCAAGGGTCTCGCGATCAACAGCAGTCGGGAA
TCATTCCAAAGGACGTGA
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