mRNA_L-elsbetiae_contig4963.12938.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4963.12938.1
Unique NamemRNA_L-elsbetiae_contig4963.12938.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig4963.12938.1 vs. uniprot
Match: D7FJ45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ45_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 4.750e-30
Identity = 60/83 (72.29%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 VEELRGLKDDVRTLQERNEYHVTMLQDEHTSAHQELVHRLSVLREQVTHLGLKHERYKETARLNEAAGAEVESLLLKMERRTK 249
            +EELRGLK+DV TLQE+NEYH++MLQDEH S  QEL H+++VLREQ T LGLKHERYK  ARLNE   AEVE+LL KME+RTK
Sbjct:   55 LEELRGLKEDVNTLQEKNEYHISMLQDEHASVQQELSHKMAVLREQATQLGLKHERYKTAARLNEEISAEVEALLRKMEQRTK 137
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4963.12938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ45_ECTSI4.750e-3072.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4963contigL-elsbetiae_contig4963:4371..5254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue5.2e-24
Seed eggNOG ortholog2880.D7FJ45
Hectar predicted targeting categoryother localisation
EggNOG OGs2D44P@1,2STVI@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_000080.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size251
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816496.4098985-CDS-L-elsbetiae_contig4963:4370..44591622816496.4098985-CDS-L-elsbetiae_contig4963:4370..4459Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4963 4371..4459 +
1691683601.8066385-CDS-L-elsbetiae_contig4963:4370..44591691683601.8066385-CDS-L-elsbetiae_contig4963:4370..4459Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4963 4371..4459 +
1622816496.4210975-CDS-L-elsbetiae_contig4963:5094..52541622816496.4210975-CDS-L-elsbetiae_contig4963:5094..5254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4963 5095..5254 +
1691683601.8178039-CDS-L-elsbetiae_contig4963:5094..52541691683601.8178039-CDS-L-elsbetiae_contig4963:5094..5254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4963 5095..5254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4963.12938.1prot_L-elsbetiae_contig4963.12938.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4963 4371..5254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4963.12938.1

>prot_L-elsbetiae_contig4963.12938.1 ID=prot_L-elsbetiae_contig4963.12938.1|Name=mRNA_L-elsbetiae_contig4963.12938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
VEELRGLKDDVRTLQERNEYHVTMLQDEHTSAHQELVHRLSVLREQVTHL
GLKHERYKETARLNEAAGAEVESLLLKMERRTK
back to top

mRNA from alignment at L-elsbetiae_contig4963:4371..5254+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4963.12938.1 ID=mRNA_L-elsbetiae_contig4963.12938.1|Name=mRNA_L-elsbetiae_contig4963.12938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=884bp|location=Sequence derived from alignment at L-elsbetiae_contig4963:4371..5254+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGAGGAGCTCCGAGGGCTCAAAGATGATGTGAGGACGCTGCAAGAGCG
GAACGAGTACCATGTGACGATGCTGCAGGATGAACACACGTAAGTGTCGG
CTAGCCGCCGATAACAAAGGTTCGGCACCAGCTTGTTTTCTCTCAACATT
GTTTAGGAAGTGGAAGAGAGGCAATGATGCGTATGCATCCTTGAACCGAT
TGTTTTTTCTGCTCAGGGGAAGCAGCGAGCCAACCGCGCATTGCCGTTGG
AAGTAGACGTTTTGTTCGATCTATGCACCATGAATCAACAAAACAACAGA
GCTCGTTTACGTGACGATACAGTCCAATCTCAGCAGTTTGGGCGATCCCA
CTACGGACTCTATGCCACGAAATTAGAACAATGCGTGGAAGGCCATACCC
TTGCAGTTTTTTCCTTGGTGCTCTATCGGCCAACGGCAGCAGAGACAATA
TACATGTGGAATGCCACCCGCGCACAGAATGTGGTCGATAGCTGCTACGA
ACGTATACTGTACTAAGATGCGCATGGGTGCTGTTGGTTATGGTTCATTC
GTTGCCAATTGACTATTTGAGGTAGAACATTTGGCTACGGTCGAGTATTC
AGGTCTAGCGCATTGAATACAAGTGGACTTCCGAAACGCCAAGATCAGCG
TCCTGAAAACTGAATATCGACCCCTCTCCAAGGCTGCACTAACGACTAAA
AAACGCTTGGAATGGATGCTGCAGCTCGGCTCACCAAGAGCTGGTGCACA
GGTTGTCCGTTCTTCGAGAGCAAGTCACGCACCTCGGCCTGAAGCACGAA
CGCTACAAAGAAACGGCACGCCTCAACGAGGCGGCCGGAGCGGAGGTAGA
ATCCCTCCTGCTCAAGATGGAGCGAAGAACTAAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig4963:4371..5254+

>mRNA_L-elsbetiae_contig4963.12938.1 ID=mRNA_L-elsbetiae_contig4963.12938.1|Name=mRNA_L-elsbetiae_contig4963.12938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig4963:4371..5254+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGAGGAGCTCCGAGGGCTCAAAGATGATGTGAGGACGCTGCAAGAGCG
GAACGAGTACCATGTGACGATGCTGCAGGATGAACACACGTTGAGGAGCT
CCGAGGGCTCAAAGATGATGTGAGGACGCTGCAAGAGCGGAACGAGTACC
ATGTGACGATGCTGCAGGATGAACACACCTCGGCTCACCAAGAGCTGGTG
CACAGGTTGTCCGTTCTTCGAGAGCAAGTCACGCACCTCGGCCTGAAGCA
CGAACGCTACAAAGAAACGGCACGCCTCAACGAGGCGGCCGGAGCGGAGG
TAGAATCCCTCCTGCTCAAGATGGAGCGAAGAACTAAGCTCGGCTCACCA
AGAGCTGGTGCACAGGTTGTCCGTTCTTCGAGAGCAAGTCACGCACCTCG
GCCTGAAGCACGAACGCTACAAAGAAACGGCACGCCTCAACGAGGCGGCC
GGAGCGGAGGTAGAATCCCTCCTGCTCAAGATGGAGCGAAGAACTAAG
back to top