mRNA_L-elsbetiae_contig4962.12936.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4962.12936.1
Unique NamemRNA_L-elsbetiae_contig4962.12936.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4962.12936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4962contigL-elsbetiae_contig4962:5892..6549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size658
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4962.12936.1prot_L-elsbetiae_contig4962.12936.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4962 5912..6250 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816496.1946335-UTR-L-elsbetiae_contig4962:5891..59111622816496.1946335-UTR-L-elsbetiae_contig4962:5891..5911Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4962 5892..5911 +
1691683601.6469164-UTR-L-elsbetiae_contig4962:5891..59111691683601.6469164-UTR-L-elsbetiae_contig4962:5891..5911Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4962 5892..5911 +
1622816496.2209866-UTR-L-elsbetiae_contig4962:6250..65491622816496.2209866-UTR-L-elsbetiae_contig4962:6250..6549Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4962 6251..6549 +
1691683601.6715512-UTR-L-elsbetiae_contig4962:6250..65491691683601.6715512-UTR-L-elsbetiae_contig4962:6250..6549Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4962 6251..6549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816496.2072082-CDS-L-elsbetiae_contig4962:5911..62501622816496.2072082-CDS-L-elsbetiae_contig4962:5911..6250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4962 5912..6250 +
1691683601.6603315-CDS-L-elsbetiae_contig4962:5911..62501691683601.6603315-CDS-L-elsbetiae_contig4962:5911..6250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4962 5912..6250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4962.12936.1

>prot_L-elsbetiae_contig4962.12936.1 ID=prot_L-elsbetiae_contig4962.12936.1|Name=mRNA_L-elsbetiae_contig4962.12936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MTTPPPLAAYSLPAPSAESTLLSAGENVGENVPGRELALYVEPTTRCVHT
LPDFRASPRTLELEVALNLIRRGDCPIPLLQQKPRYRRWTYAPPAAVHLT
FLGHPDRRHELS*
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mRNA from alignment at L-elsbetiae_contig4962:5892..6549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4962.12936.1 ID=mRNA_L-elsbetiae_contig4962.12936.1|Name=mRNA_L-elsbetiae_contig4962.12936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=658bp|location=Sequence derived from alignment at L-elsbetiae_contig4962:5892..6549+ (Laminarionema elsbetiae ELsaHSoW15)
CAACAGTATTGTTATCACAAATGACAACACCACCACCCTTGGCAGCATAC
TCATTACCAGCCCCATCCGCTGAATCCACCTTGCTTTCAGCTGGGGAAAA
TGTTGGCGAAAACGTGCCCGGCAGAGAGCTCGCGTTGTATGTTGAACCAA
CTACACGCTGCGTCCATACACTCCCTGATTTTCGTGCATCACCTCGGACC
CTAGAATTGGAAGTGGCACTCAACTTGATCAGACGGGGGGATTGTCCAAT
TCCCCTACTACAGCAGAAGCCCCGCTATCGACGCTGGACATATGCTCCTC
CTGCAGCTGTACACTTGACGTTCTTAGGTCACCCCGACCGAAGACACGAG
CTGTCCTAATTGGCTCAAAATCCCGGACTTCAAGCCACGTCAGCGCCTGC
GCGCATGCGACACGGCAAACGACCCGACTCGCGCCGACTACCAACGCCAC
ACCTTACTGCCCCCTAGAGCCCCTCACGAGGCGCTCTGCAATCCTCGTTG
AAGAGGGAGATGGGAAGGTGTGCGCGCGATATGCAAAAAATTGAACGCCC
CGTACGGGGCGATGACGGCACCGACGTGCGACGACGCCACCGCGGCTTTC
TTGTCGCCGCTGCAGCAGAGAACGTGCAAGAAGAGACAAACTGCCATGAC
TGCCGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4962:5892..6549+

>mRNA_L-elsbetiae_contig4962.12936.1 ID=mRNA_L-elsbetiae_contig4962.12936.1|Name=mRNA_L-elsbetiae_contig4962.12936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig4962:5892..6549+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAACACCACCACCCTTGGCAGCATACTCATTACCAGCCCCATCCGC
TGAATCCACCTTGCTTTCAGCTGGGGAAAATGTTGGCGAAAACGTGCCCG
GCAGAGAGCTCGCGTTGTATGTTGAACCAACTACACGCTGCGTCCATACA
CTCCCTGATTTTCGTGCATCACCTCGGACCCTAGAATTGGAAGTGGCACT
CAACTTGATCAGACGGGGGGATTGTCCAATTCCCCTACTACAGCAGAAGC
CCCGCTATCGACGCTGGACATATGCTCCTCCTGCAGCTGTACACTTGACG
TTCTTAGGTCACCCCGACCGAAGACACGAGCTGTCCTAAATGACAACACC
ACCACCCTTGGCAGCATACTCATTACCAGCCCCATCCGCTGAATCCACCT
TGCTTTCAGCTGGGGAAAATGTTGGCGAAAACGTGCCCGGCAGAGAGCTC
GCGTTGTATGTTGAACCAACTACACGCTGCGTCCATACACTCCCTGATTT
TCGTGCATCACCTCGGACCCTAGAATTGGAAGTGGCACTCAACTTGATCA
GACGGGGGGATTGTCCAATTCCCCTACTACAGCAGAAGCCCCGCTATCGA
CGCTGGACATATGCTCCTCCTGCAGCTGTACACTTGACGTTCTTAGGTCA
CCCCGACCGAAGACACGAGCTGTCCTAA
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