mRNA_L-elsbetiae_contig496.12933.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig496.12933.1
Unique NamemRNA_L-elsbetiae_contig496.12933.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig496.12933.1 vs. uniprot
Match: D8LBE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBE8_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 9.690e-12
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:  250 QKEEFPLTSTPLDTWVGRYVRITSPKHNGTTGLVHR 357
            +K+EFPL S PLDTWVGR+VRIT+P+HNGTTGLVHR
Sbjct:   79 RKDEFPLISVPLDTWVGRFVRITTPRHNGTTGLVHR 114
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BLAST of mRNA_L-elsbetiae_contig496.12933.1 vs. uniprot
Match: A0A6H5JHP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.280e-11
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:  253 KEEFPLTSTPLDTWVGRYVRITSPKHNGTTGLVHR 357
            K+EFPL S PLDTWVGR+VRIT+P+HNGTTGLVHR
Sbjct:  104 KDEFPLISVPLDTWVGRFVRITTPRHNGTTGLVHR 138
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig496.12933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBE8_ECTSI9.690e-1280.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHP0_9PHAE1.280e-1182.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig496contigL-elsbetiae_contig496:34051..35085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816495.6838427-CDS-L-elsbetiae_contig496:34050..341521622816495.6838427-CDS-L-elsbetiae_contig496:34050..34152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 34051..34152 -
1691683601.290346-CDS-L-elsbetiae_contig496:34050..341521691683601.290346-CDS-L-elsbetiae_contig496:34050..34152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 34051..34152 -
1622816495.6956823-CDS-L-elsbetiae_contig496:34830..350851622816495.6956823-CDS-L-elsbetiae_contig496:34830..35085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 34831..35085 -
1691683601.3003166-CDS-L-elsbetiae_contig496:34830..350851691683601.3003166-CDS-L-elsbetiae_contig496:34830..35085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 34831..35085 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig496.12933.1prot_L-elsbetiae_contig496.12933.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig496 34051..35085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig496.12933.1

>prot_L-elsbetiae_contig496.12933.1 ID=prot_L-elsbetiae_contig496.12933.1|Name=mRNA_L-elsbetiae_contig496.12933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
AVNERPTAHASAPLANASAAPGGGDATHGEGGSESPGPAAERDGEGGSGR
GAPTPAANARPVAKASAAATAAERADALIKLRPQKEEFPLTSTPLDTWVG
RYVRITSPKHNGTTGLVHR
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mRNA from alignment at L-elsbetiae_contig496:34051..35085-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig496.12933.1 ID=mRNA_L-elsbetiae_contig496.12933.1|Name=mRNA_L-elsbetiae_contig496.12933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1035bp|location=Sequence derived from alignment at L-elsbetiae_contig496:34051..35085- (Laminarionema elsbetiae ELsaHSoW15)
GCGGTGAACGAAAGGCCGACGGCGCACGCAAGTGCCCCGTTGGCTAACGC
GAGCGCAGCGCCCGGCGGCGGTGATGCCACGCATGGCGAGGGCGGAAGCG
AAAGTCCCGGGCCAGCGGCTGAGAGAGATGGCGAGGGTGGCAGCGGCCGA
GGAGCCCCCACGCCAGCGGCGAACGCGAGGCCGGTAGCAAAAGCGAGTGC
TGCAGCCACGGCAGCTGAACGGGCCGATGCACTGATCAAGCTTCGACCAC
AAAAGGTACAATAAAAACACCCTCCTGGCTGTGTGTGTACGGAAGGAGGT
TAGATTCCACCATCAAACTCAGCAATTAAGAAGATTTGTTTCCTCTCGGG
ATTTGCGTTGAGAGATGCTCTAAACCGTTGGACGATTTAAATGTTTTTTG
TTTTACGATCAGATTGCGTGCAGGAAGATTTTTTCGTAGAACGCCCAACG
CATACACCTGAATCCTGTCTCAAGTGGTGTTGAAATTACCTTGAAACGAG
AGAGGGGGGGGGTACAGAAGAGGGAGGATTGGGAGAGACGAGGCGAAACA
AGGGGGGGGGGGGGGCAACAAAAGAGGTTCATGGCCAATGAAACAAAAGA
GGGCGTTGGTGATAATTGGCCACGTGCGGTGTGGTGATGTAGGTAAACAC
CTCGAGTGCTGCTGGCATCTTAGCATGAACACGCACAAGCGGTCGGTCCT
CTCACTCTTGGCCTCTGCTGTGGAATGTCTTCGTACATACATACTGTTTT
GTCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCTCCCGGATCCCCCGCCTCCCACCATNNNNNNNNNNAGGGAGCGGGGG
GGTCTTGTCCTTTGTCTCTTTTTTTTTGTTTTTCTTTTTCCCCCCCCTCT
TTTTTTCTCCCCCCCCCCCCCCCCCCCCTGCAGGAAGAGTTTCCTCTTAC
CTCTACTCCTCTTGACACATGGGTCGGGCGCTACGTCCGCATCACCTCAC
CGAAGCACAACGGCACCACAGGCCTCGTTCACAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig496:34051..35085-

>mRNA_L-elsbetiae_contig496.12933.1 ID=mRNA_L-elsbetiae_contig496.12933.1|Name=mRNA_L-elsbetiae_contig496.12933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig496:34051..35085- (Laminarionema elsbetiae ELsaHSoW15)
GCGGTGAACGAAAGGCCGACGGCGCACGCAAGTGCCCCGTTGGCTAACGC
GAGCGCAGCGCCCGGCGGCGGTGATGCCACGCATGGCGAGGGCGGAAGCG
AAAGTCCCGGGCCAGCGGCTGAGAGAGATGGCGAGGGTGGCAGCGGCCGA
GGAGCCCCCACGCCAGCGGCGAACGCGAGGCCGGTAGCAAAAGCGAGTGC
TGCAGCCACGGCAGCTGAACGGGCCGATGCACTGATCAAGCTTCGACCAC
AAAAGGCGGTGAACGAAAGGCCGACGGCGCACGCAAGTGCCCCGTTGGCT
AACGCGAGCGCAGCGCCCGGCGGCGGTGATGCCACGCATGGCGAGGGCGG
AAGCGAAAGTCCCGGGCCAGCGGCTGAGAGAGATGGCGAGGGTGGCAGCG
GCCGAGGAGCCCCCACGCCAGCGGCGAACGCGAGGCCGGTAGCAAAAGCG
AGTGCTGCAGCCACGGCAGCTGAACGGGCCGATGCACTGATCAAGCTTCG
ACCACAAAAGGAAGAGTTTCCTCTTACCTCTACTCCTCTTGACACATGGG
TCGGGCGCTACGTCCGCATCACCTCACCGAAGCACAACGGCACCACAGGC
CTCGTTCACAGGGAAGAGTTTCCTCTTACCTCTACTCCTCTTGACACATG
GGTCGGGCGCTACGTCCGCATCACCTCACCGAAGCACAACGGCACCACAG
GCCTCGTTCACAGG
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