mRNA_L-elsbetiae_contig496.12931.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig496.12931.1
Unique NamemRNA_L-elsbetiae_contig496.12931.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig496.12931.1 vs. uniprot
Match: D7FHY8_ECTSI (Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY8_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 4.450e-41
Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:  484 RDKVSRPKNDPLRKGNRMWNLKHMRATQEGKVDVCSRCRSRPDGGMMVCANRDLAKYHKFCFPCLQ-KDNVKKIDLVGGSTKWKCPLCRDFRARPKRGSHPPSYLRG 801
            R+KV+  K DPLRK NRMWNLKHMRATQEGK+DVC+ CR  PDGG+MVC++++LAK H FCFPCL+ KD ++K DLVGG  KW+CP CR+ R+RPKRG+ PPS LRG
Sbjct: 1446 REKVTLGKKDPLRKENRMWNLKHMRATQEGKMDVCAYCRLHPDGGLMVCSSQELAKMHSFCFPCLKRKDGIEKSDLVGGGIKWECPTCRERRSRPKRGAGPPSSLRG 1552
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BLAST of mRNA_L-elsbetiae_contig496.12931.1 vs. uniprot
Match: D7FI07_ECTSI (GF22528 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI07_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.200e-37
Identity = 70/108 (64.81%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:  487 DKVSRPKNDPLRKGNRMWNLKHMRATQEGKVDVCSRCRSRPDGGMMVCANRDLAKYHKFCFPCLQKDN-VKKIDLVGGSTKWKCPLCRDFRARPKRGSHPPSYLRGAA 807
            +K +  KNDPLRK NRMWNLKHMRATQEGK+DVC+ CR +PDGG+MVC+  +LAK H FCFPCL++ N +K  DL GG  KW+CP C   +ARPKR  HPPS L GAA
Sbjct:  854 EKTTLGKNDPLRKENRMWNLKHMRATQEGKMDVCTYCRFQPDGGLMVCSTSELAKIHSFCFPCLKRKNGIKLSDLTGGDVKWECPPCLARKARPKRKPHPPSSLGGAA 961
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BLAST of mRNA_L-elsbetiae_contig496.12931.1 vs. uniprot
Match: A0A6H5L4S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S9_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.600e-35
Identity = 67/102 (65.69%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:  505 KNDPLRKGNRMWNLKHMRATQEGKVDVCSRCRSRPDGGMMVCANRDLAKYHKFCFPCLQKDN-VKKIDLVGGSTKWKCPLCRDFRARPKRGSHPPSYLRGAA 807
            KNDPLRK NRMWNLKHMRAT+EGK+DVC+ CR  PDGG+MVC+  +LAK H FCFPCL++ N +K  DL GG  KW CP C + +ARPKR  HP S L GAA
Sbjct:  849 KNDPLRKENRMWNLKHMRATREGKMDVCAYCRLHPDGGLMVCSTPELAKNHSFCFPCLKRKNGIKLSDLTGGDVKWLCPPCLERKARPKRNPHPSSTLGGAA 950
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BLAST of mRNA_L-elsbetiae_contig496.12931.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 5.720e-28
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:  478 GKRDKVSRPKNDPLRKGNRMWNLKHMRATQEGKVDVCSRCRSRPDGGMMVCANRDLAKYHKFCFPCLQ-KDNVKKIDLVGGSTK 726
            G R+KV+  K DPLRK NRMWNLKHMRATQEGK+DVC+ CR  PDGG+MVC++++LAK H FCFPCL+ KD ++K DLVGG  K
Sbjct: 1332 GDREKVTLGKKDPLRKENRMWNLKHMRATQEGKMDVCAYCRLHPDGGLMVCSSQELAKMHSFCFPCLKRKDGIEKSDLVGGGIK 1415
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig496.12931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FHY8_ECTSI4.450e-4168.22Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FI07_ECTSI2.200e-3764.81GF22528 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L4S9_9PHAE1.600e-3565.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJY6_9PHAE5.720e-2867.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig496contigL-elsbetiae_contig496:25977..28106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue3.7e-38
Seed eggNOG ortholog2880.D7FHY8
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K02606,ko:K09186,ko:K09188,ko:K14964,ko:K17586,ko:K22197
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04110,ko04111,ko04113,ko04934,ko05202,ko05225,map00310,map04110,map04111,map04113,map04934,map05202,map05225
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA processing
EggNOG OGsCOG2940@1,COG5141@1,KOG0825@1,KOG0825@2759,KOG0955@2759,KOG4443@2759
EC2.1.1.43
COG Functional cat.LO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03000,ko03032,ko03036
Exons3
Model size947
Cds size945
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig496.12931.1prot_L-elsbetiae_contig496.12931.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig496 25977..28106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816495.6127677-CDS-L-elsbetiae_contig496:25976..260211622816495.6127677-CDS-L-elsbetiae_contig496:25976..26021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 25977..26021 -
1691683601.2545483-CDS-L-elsbetiae_contig496:25976..260211691683601.2545483-CDS-L-elsbetiae_contig496:25976..26021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 25977..26021 -
1622816495.6238992-CDS-L-elsbetiae_contig496:26599..267731622816495.6238992-CDS-L-elsbetiae_contig496:26599..26773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 26600..26773 -
1691683601.2721257-CDS-L-elsbetiae_contig496:26599..267731691683601.2721257-CDS-L-elsbetiae_contig496:26599..26773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 26600..26773 -
1622816495.6361392-CDS-L-elsbetiae_contig496:27380..281061622816495.6361392-CDS-L-elsbetiae_contig496:27380..28106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 27381..28106 -
1691683601.2810564-CDS-L-elsbetiae_contig496:27380..281061691683601.2810564-CDS-L-elsbetiae_contig496:27380..28106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig496 27381..28106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig496.12931.1

>prot_L-elsbetiae_contig496.12931.1 ID=prot_L-elsbetiae_contig496.12931.1|Name=mRNA_L-elsbetiae_contig496.12931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=315bp
HSRDNAPRVNGADGGSGSNEPLRARTRDELRPVGGGGGGGGGGGSSATGR
DPLRGSGGVTDNMGVDDGESDQPCGSPVSEEGQSGSSRGTGGRPVHARRE
THPRRATPPIGSFDEGASVSGSGGGSSSGSSNSSSSSSRRRQNSADAPST
KTAPLHPAGGKRDKVSRPKNDPLRKGNRMWNLKHMRATQEGKVDVCSRCR
SRPDGGMMVCANRDLAKYHKFCFPCLQKDNVKKIDLVGGSTKWKCPLCRD
FRARPKRGSHPPSYLRGAAATEAGGRDEASEECERADAGMRVKRSSSVAQ
MSMRAVETLSSRTGG
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mRNA from alignment at L-elsbetiae_contig496:25977..28106-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig496.12931.1 ID=mRNA_L-elsbetiae_contig496.12931.1|Name=mRNA_L-elsbetiae_contig496.12931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2130bp|location=Sequence derived from alignment at L-elsbetiae_contig496:25977..28106- (Laminarionema elsbetiae ELsaHSoW15)
CACAGTAGGGACAACGCTCCCCGAGTGAACGGGGCGGACGGTGGTAGCGG
AAGCAACGAACCTCTCCGAGCGCGAACACGGGATGAACTGCGCCCGGTTG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTCTAGTGCCACTGGTCGG
GACCCCCTGAGAGGAAGTGGTGGGGTCACCGACAACATGGGCGTGGACGA
TGGCGAGAGCGATCAGCCATGCGGCTCCCCAGTGTCCGAGGAGGGACAGA
GCGGCAGCAGCAGAGGTACGGGGGGTAGACCGGTCCATGCCCGAAGGGAA
ACACACCCCCGGAGGGCAACGCCGCCGATTGGTAGCTTCGATGAAGGTGC
TAGCGTAAGCGGCAGCGGCGGCGGCAGTAGTAGCGGCAGCAGCAACAGCA
GCAGCAGCAGCAGCAGGCGGCGCCAGAACAGCGCCGACGCGCCCTCAACA
AAGACAGCTCCCCTGCACCCCGCGGGGGGTAAGCGCGACAAGGTCTCTCG
GCCGAAGAACGACCCGCTGCGCAAGGGAAATCGTATGTGGAACCTCAAGC
ACATGAGAGCGACCCAGGAGGGCAAGGTTGACGTGTGCTCCCGCTGCCGT
TCGCGCCCCGACGGTGGAATGATGGTCTGCGCCAACCGGGATCTCGCCAA
GTACCACAAGTTCTGCTTCCCGTGCCTGCAGAAGGACAATGTCAAAAAAA
TCGACCTCGTCGGCGGCAGCACAAAGGTAGATACATATACTGTGGACGGC
AGGGTTAAAAAAAAAACGGTGTCTGTACCGCCTTGTTTTTCTACTCTCCC
ACCCCCCCCGGCCGCCCTAGCGGTTTGCTGCAGCCTCGCTTTCGTGAATA
TTAAAGGTTAAGGTTTACACCCCTCCTTTCTCTCTCTCGGCTTGATTTGC
TGCTCAGCCAGCAGGTTCCCTTCACCTGCGTTCGATGGTGGATCCAGGGC
GACGCTGTCATGCCATGTCATTGCTGAGACGTCCGTCACCCAGAAAAAGA
TAAAATAAACTTGTAGTGTTTCTAGATCGCCCCCGCCCTCGAGCTTATAC
TTCTAGAAACAAAAACAGGACTATGTAGTCTACAGCACTTTTGTAAGTAT
ATGTAAGTCTACAAAATCCCAGAAAAAATACAAACAAAAGGCTTGAACTC
TCGAGGATCTCTAGACTAAGCTCGTCTCTGGTGTCAGCTTCCTCGTGAAC
AAACCCCGCCACCAAGACCACTTTGTCCGGAAAATATAAGGCCAAGAGCA
ACGCTCGTATGAGCACCATGTTGACCAAAATAACTCATTTTTCCCCCGAC
CACTATCACCACCACCCTTGATAACGCTTCCAGTGGAAGTGCCCGTTGTG
CCGAGACTTCAGGGCGCGCCCCAAGCGCGGATCTCACCCGCCTTCCTACC
TGCGCGGAGCAGCGGCGACGGAGGCGGGCGGCAGAGACGAGGCTTCTGAG
GAGTGCGAGCGCGCGGACGCGGGGATGAGGGTGAAGCGGTCGTCCTCCGT
GGCCCAGGTAACGACGGATCGGTGTACCCGCGTATTTTTGTTTAGTGGCG
GGAATGTGTCCTGCGGAGGGAGGTAAAGAGGCTTTAAAAGGCTTTTTGTG
CAGTATTCTGACACTTTTTTGGCGGTGTGCTCTTGACGGAATAATTGTGC
GATATGTTACCGAACTACGGGAGATGTTGGTACAGGGTCTCGATAAAGAG
ACAGGCGTGTATGTTGTCGAGGTTGGGTTTGCTTTTCTGTCCTCTTATAT
TCGGCGGTGGGTTTGAGAGAGCTTGCCGTGACGACGTGCAAATTATCACC
CGCGTCTGCTCTGCTTTAGCCTTCAATCAAAGGTTTGCAGCCTCTCATGC
ACGTAAAGAGCACGCGCAGACTATGGCCAGGGGCTTTATTTCGTCTCTGC
GTCGAAAACAAACTCCTTCTCAACTTAATCGTGCCCCGCGTGATTACACG
TCTGTGTTGGAGTCAGTTGATGACTAGCGAAACAAGCCTGTGATAGCTCT
TGAGAGGAAGACGAATCGCCCCCCTATCTCTCCCCCTCCCGCCGTTTCAC
GTTTATTTTCGTTGATCCCCCCAAAATATCCCTAGATGTCAATGAGAGCT
GTAGAGACCCTATCATCCCGAACTGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig496:25977..28106-

>mRNA_L-elsbetiae_contig496.12931.1 ID=mRNA_L-elsbetiae_contig496.12931.1|Name=mRNA_L-elsbetiae_contig496.12931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1890bp|location=Sequence derived from alignment at L-elsbetiae_contig496:25977..28106- (Laminarionema elsbetiae ELsaHSoW15)
CACAGTAGGGACAACGCTCCCCGAGTGAACGGGGCGGACGGTGGTAGCGG
AAGCAACGAACCTCTCCGAGCGCGAACACGGGATGAACTGCGCCCGGTTG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTCTAGTGCCACTGGTCGG
GACCCCCTGAGAGGAAGTGGTGGGGTCACCGACAACATGGGCGTGGACGA
TGGCGAGAGCGATCAGCCATGCGGCTCCCCAGTGTCCGAGGAGGGACAGA
GCGGCAGCAGCAGAGGTACGGGGGGTAGACCGGTCCATGCCCGAAGGGAA
ACACACCCCCGGAGGGCAACGCCGCCGATTGGTAGCTTCGATGAAGGTGC
TAGCGTAAGCGGCAGCGGCGGCGGCAGTAGTAGCGGCAGCAGCAACAGCA
GCAGCAGCAGCAGCAGGCGGCGCCAGAACAGCGCCGACGCGCCCTCAACA
AAGACAGCTCCCCTGCACCCCGCGGGGGGTAAGCGCGACAAGGTCTCTCG
GCCGAAGAACGACCCGCTGCGCAAGGGAAATCGTATGTGGAACCTCAAGC
ACATGAGAGCGACCCAGGAGGGCAAGGTTGACGTGTGCTCCCGCTGCCGT
TCGCGCCCCGACGGTGGAATGATGGTCTGCGCCAACCGGGATCTCGCCAA
GTACCACAAGTTCTGCTTCCCGTGCCTGCAGAAGGACAATGTCAAAAAAA
TCGACCTCGTCGGCGGCAGCACAAAGCACAGTAGGGACAACGCTCCCCGA
GTGAACGGGGCGGACGGTGGTAGCGGAAGCAACGAACCTCTCCGAGCGCG
AACACGGGATGAACTGCGCCCGGTTGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGGTCTAGTGCCACTGGTCGGGACCCCCTGAGAGGAAGTGGTGGG
GTCACCGACAACATGGGCGTGGACGATGGCGAGAGCGATCAGCCATGCGG
CTCCCCAGTGTCCGAGGAGGGACAGAGCGGCAGCAGCAGAGGTACGGGGG
GTAGACCGGTCCATGCCCGAAGGGAAACACACCCCCGGAGGGCAACGCCG
CCGATTGGTAGCTTCGATGAAGGTGCTAGCGTAAGCGGCAGCGGCGGCGG
CAGTAGTAGCGGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGGCGGCGCC
AGAACAGCGCCGACGCGCCCTCAACAAAGACAGCTCCCCTGCACCCCGCG
GGGGGTAAGCGCGACAAGGTCTCTCGGCCGAAGAACGACCCGCTGCGCAA
GGGAAATCGTATGTGGAACCTCAAGCACATGAGAGCGACCCAGGAGGGCA
AGGTTGACGTGTGCTCCCGCTGCCGTTCGCGCCCCGACGGTGGAATGATG
GTCTGCGCCAACCGGGATCTCGCCAAGTACCACAAGTTCTGCTTCCCGTG
CCTGCAGAAGGACAATGTCAAAAAAATCGACCTCGTCGGCGGCAGCACAA
AGTGGAAGTGCCCGTTGTGCCGAGACTTCAGGGCGCGCCCCAAGCGCGGA
TCTCACCCGCCTTCCTACCTGCGCGGAGCAGCGGCGACGGAGGCGGGCGG
CAGAGACGAGGCTTCTGAGGAGTGCGAGCGCGCGGACGCGGGGATGAGGG
TGAAGCGGTCGTCCTCCGTGGCCCAGTGGAAGTGCCCGTTGTGCCGAGAC
TTCAGGGCGCGCCCCAAGCGCGGATCTCACCCGCCTTCCTACCTGCGCGG
AGCAGCGGCGACGGAGGCGGGCGGCAGAGACGAGGCTTCTGAGGAGTGCG
AGCGCGCGGACGCGGGGATGAGGGTGAAGCGGTCGTCCTCCGTGGCCCAG
ATGTCAATGAGAGCTGTAGAGACCCTATCATCCCGAACTGGCGGCATGTC
AATGAGAGCTGTAGAGACCCTATCATCCCGAACTGGCGGC
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