mRNA_L-elsbetiae_contig4948.12914.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4948.12914.1
Unique NamemRNA_L-elsbetiae_contig4948.12914.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig4948.12914.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 5.310e-36
Identity = 76/128 (59.38%), Postives = 89/128 (69.53%), Query Frame = 1 
Query:  943 GGHILKDKALQLSSVCGFCGGFGCRTTIKARGGKQADVVHSNCRYAPRKDARDEAVQLSLKSARAGSNSSPCTNIVIKCLFCVQETFVWKYGMADHVTRVHNTDILVDGGTEGARKFKADYTVSESEK 1326
            GGHILKDK   +S+ CGFCGG G  TTI    GK   +VHS C  APR DAR EAV L+L SARAGS++S CTN+V KC FC Q  ++WKY M+DH+TR H  D+LV  GT GA  FK   T+SESEK
Sbjct:  403 GGHILKDK---VSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGT-GADNFKETCTISESEK 526
[Close]
BLAST of mRNA_L-elsbetiae_contig4948.12914.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 3.380e-34
Identity = 73/130 (56.15%), Postives = 91/130 (70.00%), Query Frame = 1 
Query:  937 HIGGHILKDKALQLSSVCGFCGGFGCRTTIKARGGKQADVVHSNCRYAPRKDARDEAVQLSLKSARAGSNSSPCTNIVIKCLFCVQETFVWKYGMADHVTRVHNTDILVDGGTEGARKFKADYTVSESEK 1326
            H+GG    +K   +S+VCGFCGG GCR+TI    G+   +VHS C  APR DAR EAV L+L SARA S++SPCTN+V+KC  C Q+ ++W YGM DHVTR H  ++LV  GT GA KFK   T+SESEK
Sbjct: 1076 HVGGDP-GNKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGT-GADKFKEACTISESEK 1203
[Close]
BLAST of mRNA_L-elsbetiae_contig4948.12914.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 7.960e-12
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 
Query: 1165 IVIKCLFCVQETFVWKYGMADHVTRVHNTDILVDGGTEGARKFKADYTVSESEK 1326
            +V+KCLFC Q+T++WKYGM++HVTR H  DILV  GT   R FK  YT+SESEK
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDR-FKEAYTISESEK 53
[Close]
BLAST of mRNA_L-elsbetiae_contig4948.12914.1 vs. uniprot
Match: A0A8H8JBI3_9AGAM (C2H2-type domain-containing protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JBI3_9AGAM)

HSP 1 Score: 77.0 bits (188), Expect = 3.090e-11
Identity = 53/169 (31.36%), Postives = 84/169 (49.70%), Query Frame = 1 
Query:  820 HEDLLHVEASTVGVAVGTAVEKIGCKLCLKQLS-RSKMRMHIGGHIL-------KDKALQLSSVCGFCGGFG-CRTTIKA-RGGKQADVVHSNCRYAPRKDARDEAVQLSLKSARAGSNSSPCTNIVIKCLFCVQETFVWKYGMADHVTRVHNTDILVDGGTEGARKFK 1296
            ++++L+  A T  + +        C  C + ++ +SKMRMHIG H+L         +   ++ +CGFCG  G C   ++  R GK  +VV S+C Y      RD+    S  +A   S +SPCTN  + C  C  +  VW YG+ DH+  VH    L+D   +   K++
Sbjct: 1151 NQNILYHLAGTKAIKLKARPSHEKCHHCGETIAIKSKMRMHIGQHLLVLRSSLDATRTGVMADMCGFCGRAGTCTVRVEPQRTGKGLEVV-SDCSY------RDK---FSYAAAAQSSKTSPCTNRPVACPLCSGDRCVWSYGLKDHILAVHPAHQLLDTTLKDISKYE 1309
[Close]
BLAST of mRNA_L-elsbetiae_contig4948.12914.1 vs. uniprot
Match: A0A4S4MVC7_9APHY (Uncharacterized protein n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4MVC7_9APHY)

HSP 1 Score: 65.1 bits (157), Expect = 1.710e-7
Identity = 43/137 (31.39%), Postives = 61/137 (44.53%), Query Frame = 1 
Query:  874 AVEKIGCKLCLKQLSRSKMRMHIGGHIL------KDKALQLS-SVCGFCGGFGCRTTIKARGGKQADVVHSNCRYAPRKDARDEAVQLSLKSARAGSNSSPCTNIVIKCLFCVQETF-----VWKYGMADHVTRVHN 1248
            A ++I C+LC      S+MR H+G HIL      +D  + +    CGFCG  GC   +          + SNC Y           Q+    A   SN++PCTN+ I CL C +        +WKY    H+T  H+
Sbjct:  768 ADDEIQCQLCEVNTPLSRMRNHVGIHILHALRGIEDDGIVIGVDPCGFCGLEGCVVQMIDSDDGNTHRILSNCEY--------HYTQMKYGPASRFSNATPCTNVPIHCLSCERTASGLPRTIWKYNALYHITLDHS 896
[Close]
BLAST of mRNA_L-elsbetiae_contig4948.12914.1 vs. uniprot
Match: B0DV83_LACBS (Predicted protein n=1 Tax=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) TaxID=486041 RepID=B0DV83_LACBS)

HSP 1 Score: 57.4 bits (137), Expect = 2.110e-6
Identity = 40/112 (35.71%), Postives = 58/112 (51.79%), Query Frame = 1 
Query:  886 IGCKLCLKQLSRSKMRMHIGGHIL----KDKALQLSSV----CGFCG-GFGCRT--TIKARGGKQADVVHSNCRYAPRKDARDEAVQLSLKSARAGSNSSPCTNIVIKCLFC 1188
            + C+LC ++ + SKMR+H+G HIL    +   ++L S+    CGFCG   GC+T  T K  G     V+ S C +   K        +  K+A   + +SPCTNI I C  C
Sbjct:   33 VNCELCGEKTTISKMRVHVGKHILYSMRRRPDVELKSMGASPCGFCGLDSGCQTQLTFKKNG---VAVIKSTCPFHYEK--------MQYKAALEPTKASPCTNIPIHCRLC 133
[Close]
BLAST of mRNA_L-elsbetiae_contig4948.12914.1 vs. uniprot
Match: B0D9P2_LACBS (Non-specific serine/threonine protein kinase n=1 Tax=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) TaxID=486041 RepID=B0D9P2_LACBS)

HSP 1 Score: 59.7 bits (143), Expect = 9.330e-6
Identity = 43/152 (28.29%), Postives = 66/152 (43.42%), Query Frame = 1 
Query:  835 HVEASTVGVAVGTAVEKIGCKLCLKQLSRSKMRMHIGGHILKD-----------KALQLSSVCGFCG--GFGCRTTIKARGGKQADVVHSNCRYAPRKDARDEAVQLSLKSARAGSNSSPCTNIVIKCLFCVQETFVWKYGMADHVTRVHNT 1251
            H     V  +VG  +++  C +C +++S    + H+GGHIL+             A+ L   CGFCG    G + TI  + GK      S C          +A +  + +A   S    CTN+ I+C FCV+    WKY    H+   H +
Sbjct:  354 HSTTEIVAPSVGKTIQE--CDICGEKVSNELQQNHMGGHILRRYRGVQHGEENLAAISLDFPCGFCGKSSAGGKCTIAIQSGK----AQSTC---------SKAYKFMIHAAAKMSAKKACTNVPIRCEFCVEVH--WKYNYHRHLQERHKS 488
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4948.12914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L2E6_9PHAE5.310e-3659.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6M3_9PHAE3.380e-3456.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
D7FNW9_ECTSI7.960e-1262.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8H8JBI3_9AGAM3.090e-1131.36C2H2-type domain-containing protein n=1 Tax=Cerato... [more]
A0A4S4MVC7_9APHY1.710e-731.39Uncharacterized protein n=1 Tax=Antrodiella citrin... [more]
B0DV83_LACBS2.110e-635.71Predicted protein n=1 Tax=Laccaria bicolor (strain... [more]
B0D9P2_LACBS9.330e-628.29Non-specific serine/threonine protein kinase n=1 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4948contigL-elsbetiae_contig4948:4414..11145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1331
Cds size1329
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4948.12914.1prot_L-elsbetiae_contig4948.12914.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4948 4414..11145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816493.7244818-CDS-L-elsbetiae_contig4948:4413..44901622816493.7244818-CDS-L-elsbetiae_contig4948:4413..4490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4948 4414..4490 +
1691683599.7964911-CDS-L-elsbetiae_contig4948:4413..44901691683599.7964911-CDS-L-elsbetiae_contig4948:4413..4490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4948 4414..4490 +
1622816493.7345243-CDS-L-elsbetiae_contig4948:4943..51171622816493.7345243-CDS-L-elsbetiae_contig4948:4943..5117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4948 4944..5117 +
1691683599.8171976-CDS-L-elsbetiae_contig4948:4943..51171691683599.8171976-CDS-L-elsbetiae_contig4948:4943..5117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4948 4944..5117 +
1622816493.7445269-CDS-L-elsbetiae_contig4948:5339..58751622816493.7445269-CDS-L-elsbetiae_contig4948:5339..5875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4948 5340..5875 +
1691683599.8266444-CDS-L-elsbetiae_contig4948:5339..58751691683599.8266444-CDS-L-elsbetiae_contig4948:5339..5875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4948 5340..5875 +
1622816493.755681-CDS-L-elsbetiae_contig4948:10422..106011622816493.755681-CDS-L-elsbetiae_contig4948:10422..10601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4948 10423..10601 +
1691683599.835066-CDS-L-elsbetiae_contig4948:10422..106011691683599.835066-CDS-L-elsbetiae_contig4948:10422..10601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4948 10423..10601 +
1622816493.7675166-CDS-L-elsbetiae_contig4948:10782..111451622816493.7675166-CDS-L-elsbetiae_contig4948:10782..11145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4948 10783..11145 +
1691683599.843365-CDS-L-elsbetiae_contig4948:10782..111451691683599.843365-CDS-L-elsbetiae_contig4948:10782..11145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4948 10783..11145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4948.12914.1

>prot_L-elsbetiae_contig4948.12914.1 ID=prot_L-elsbetiae_contig4948.12914.1|Name=mRNA_L-elsbetiae_contig4948.12914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=443bp
VFGKNTAHASAEENLRTHELGIRHQAAVRKATDAAPQPRQLPVEKVATKN
SRGQWICGCGRHLKRGETLTEKSITAHIKSAEHKKWEGGDKSTQRSLLQF
AKPVNEKVAETAPAPAFEARPAVTPLLGTNEQGAVTRAGEAWPSPGAGAD
TCEDECEVVSVRAQSTVPPRALPTTQPPASSTTPSRACRGYVPELGNPMA
ANWPFGLVTASQPWVTVVRDGVLSLFAKSVEGENTAGCVETVAGEGDVCI
PCQRLQDNTLLKVASADINPLPLHEDLLHVEASTVGVAVGTAVEKIGCKL
CLKQLSRSKMRMHIGGHILKDKALQLSSVCGFCGGFGCRTTIKARGGKQA
DVVHSNCRYAPRKDARDEAVQLSLKSARAGSNSSPCTNIVIKCLFCVQET
FVWKYGMADHVTRVHNTDILVDGGTEGARKFKADYTVSESEKK
back to top

mRNA from alignment at L-elsbetiae_contig4948:4414..11145+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4948.12914.1 ID=mRNA_L-elsbetiae_contig4948.12914.1|Name=mRNA_L-elsbetiae_contig4948.12914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6732bp|location=Sequence derived from alignment at L-elsbetiae_contig4948:4414..11145+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTTTGGCAAGAACACCGCGCACGCCTCGGCAGAAGAGAACTTGCGGAC
ACATGAACTCGGCATCAGGCACCAAGCGTGAGTGGCTCTACTTTTATCGA
CCATGCGTGTGTGCGCTTTGGCGGAGGTTTAGATTGATGGGCGTTGGTCT
CGCTGGTGCACAAAAATTGTTCTTGCTTGCTTTCCCCGCGCATGCCGACT
GCGGCGTACCATCGAACGCATGTAGGCGGCAACGCATCTCACTGGACTGG
AGGATTGTTAAAGCCACTGTCCCTTGAAATACTGATAGTTGCCATGGCTG
AAGATGTTTAGCCGAAGTTACGCTGTGGTATCTGGCTTAGGCAAAGCTAT
CTAGTTCAGGAAAAGTATCACACATATTATGACTCAAAATACCACCCCCC
CCATTTCCACCGAAGATCTTTGCTTCTTGCTTCTTGTAGAAAAAAAGCAG
TATTTTGCGCAAGATGCAAGTACACCAAGCACCGACAAAGACATCATCCT
CTCTCTGGGTAATCGCCTTTACTTCAACAGCGCCGTGCGGAAGGCGACCG
ATGCGGCACCTCAACCCCGGCAACTGCCGGTGGAAAAGGTAGCAACGAAG
AACAGCAGAGGGCAATGGATCTGCGGGTGCGGCAGGCACCTGAAACGTGG
CGAAACCTTGACGGAAAAAAGCATCACGGCGCACATCAAGTCTGCCGAGC
ACAAGTAAGACATTGGTTGTAATGCTAGTAACATAGACATAGACACGCAA
GCAGTTGCTTAGTTTGGGTAAGCTGTGGTACCCGCAAGCGCGATGTGTAA
AAACGCTGTTGCTCCGACCCAACTCTAAAGTTGCGAAAACTACGTCTAGT
GCTATGCCGACTACTGATACCGCGTGCCACTGCTGGTTCCTACGTCATCT
TGAAACTGTCCGTCGGCTGCGTATAGGAAGTGGGAGGGTGGAGACAAGTC
AACGCAGAGGTCTTTGCTCCAATTTGCGAAGCCCGTGAACGAGAAAGTAG
CGGAGACGGCTCCGGCGCCTGCTTTTGAGGCTCGACCGGCTGTGACACCC
TTGCTCGGCACTAACGAACAGGGAGCTGTCACTCGTGCGGGTGAAGCATG
GCCGAGCCCGGGCGCGGGCGCGGACACGTGTGAAGATGAGTGCGAAGTAG
TGAGCGTGCGTGCACAGTCCACCGTGCCCCCGCGAGCGCTGCCCACGACG
CAACCACCTGCCTCTTCAACAACTCCATCACGAGCGTGTAGAGGGTACGT
ACCAGAGCTGGGCAACCCCATGGCAGCCAATTGGCCCTTTGGCTTGGTGA
CCGCTAGCCAGCCTTGGGTGACGGTCGTACGTGACGGGGTTCTGTCGTTG
TTCGCGAAGAGCGTCGAGGGAGAGAACACGGCGGGGTGCGTGGAGACCGT
TGCAGGCGAAGGAGACGTTTGCATCCCATGCCAACGGCTTCAGGACAACA
CTCTTCTCAAAGGTCAGGCAAAAAACCCATGCTGGTCGTGTGTGCCTTTC
GCGCGTGGATGCGAATGACACCTCTGTACGTGGCGTCGGCATCCTTCCGC
ATCGCTGTTTTGCCATGAGTTTGACCCCAAGAGTGTAGAATTGAACTACG
TATAACTTTGACACACGCTTCTCGCCACCTCGCTGCGAATACTTTGCGTC
TCGCAGATATCGTGGAACGAGCCAGTCGCTCCATGGCGAGTGAGAAAGGT
CGCTCTCTGAACTACAAGTTCATGACGATGAGGCAGATGGAGGAGCGGGC
GCGGACCGCATCTGCCGCAACGCACGCTCAACGTCTAACCACTTTGAACT
TCAGAAGGAAGGCGTTGCGTATCGCGAGAAAGCTCGAGGGGTTCAAGAAA
GTCATGATGTACCTCGGCGAGAACGATATCCCTGGTGTGAGGCGGGTCTT
GGGACAGGCGCTGAAGGACGGCAAGTCGCCGTTTGCGATCTTGGACACGT
TGCGGGCGGCCTTCGAAGGCAGGTACCACGCACGCGGCCACAACGAAGAC
GACTTCGATCTGGCCATTCTGGTGATGCGTGTTGGGGGACCCGCTCTGCT
TTACGCCCTGTCCAAGTCTCTGGGTCTTCCCAGCGTTACCAGCGTTTACG
TGGAGATGAAAAAGCGACACGTGAGTGGGATCAAGCTCGTGACGTTTGTG
TGATGAGGCAGATGGTTTGGTTGTTTTCCATCCTTCCGACGTACGACATG
CAGATCAACTTTTGCAGATGTTTTTTTTTTTTTTCTTTACGACGGTTGCC
TTTCCGTCGACCGGAGACCGTGGGGGTGACGAAACGCCGTCAAGCAATCC
AACGTATGCGCTCAGTTATGGCATCGTCAAAACGGGAGTCGGCATGTTAA
ATCTTGCGGTATCTCCATATCAAAAGCGAAACGCCAGCAGACTGCGTGAC
GTTTTTTTCGGCGTGGGTCGCGCGCTAAGCAGAGGGTGCCAATGTCAGTT
CGGTTCCCGTTGCCAATTTCGAAGCCATGGACGAGGGTACGGGTCGGACA
CCCTGCTTCCACCTCGTCTACGGACGAAAACCTTTAATCCTAGCGACACC
TGCGCCCTCTGCCTCTCATGTTGCGGTCGTGCCTGGTACAACAGATGGCG
TTTACTCCTTGTGCATCGCTCAAGCTAGAGACTCTTGAGCAGGCGCTGAT
CGACAACTTGCTGGCGGCAATGGAGGTCTACCGTGGACGGGTTCGCCTCT
TTCAGATCCAAGTGGACGAGATCGCCCAGGAGAAGCGTGCACGGCACTAC
CAGAAAAATGACACCGTAAGTCAGTCGCATAACACCATCTTTCCCGTAAA
GCACACCAAGCGGGCCTTGCGTTGGTCTCCAACGTTTCTTTCGGATTCAC
CCGTTCGGAAGAGATATCAACCCTTCTTATAATTATTTCCTGTCACCCCG
GCAGGTTCTGGGGTTGTGTGTGGAACACACACACGAGAATGACGTCTGCT
TCAGAAACGTCGCACACGTGGAACGCGTCGCAACGAAGCTGAAGGAAGAA
GAGATCCACCTTGGCAGCGAGAACACCGTCTTCTCTCTACAGGGCTTCGG
GAGCAGCCCCCACCACTCCCTCCCTGTGGTGTCTTTCAGCAGCTGCAAAA
CCAGTAACCCCCGTCAGCAGGAACTGGTCATTCGCACGGTGAGTGCGTGC
TTCTTTTCGTCACATCATTTTTTGTCTTTTTGCTTCTTGCGTCCTGTTAG
TCCCTTTGGTTTGATGGTAGTCGTGGGGGAGTCGGCTGCGTGTTACGTAC
ATTGAAAGTTCGTTTTCTCCTTGCTGTGTTGCCAAGTGTAGGTCTTTCGG
CCGTTGGGAGGTTCATCTTTCACCGCATGTTGTATCGATTCTATCGACGA
GCAAACATCCCGCAAAATATTTCATCACTTACTTGTCTCCTCACACTTTC
AGATACTGCGGATTTGCGCCAATGACTCGCGTTTCCGGGATGTGTTCCGC
ATCGTCGTCGTGGCAACGGACGGAGACTCTGTGCGACGGGGCATGCTGAA
GGATATGACGACCGATTGTTCCGCTCCCGCTGCGCAATCACTCGTGGGGT
TGGTCCTGATGCACCCGCTGAGGAGTGTCGGCGGATGGGCGCAGTCGATG
GACCCGAAGCACAACGCGAAACGTATGCGCACCCGTCTGTACGGCGAGAA
GGGCGTTCAAATCGCCGCCGATAGGGCTTTGCTGAACAAGCACACGCTCC
CTGTGTTGTTTCGCATGCGGGCACCGGGAATGGACTTCTCGCAGATATTC
AATCCTGCCGACAAGTGAGTCACATGCGGCGTGTGTTTGTTGGTGGATGT
TAAACTTCTCGTGTCTGATGAAGGAATCACTGAACATTTGGTGAACTCTT
CCTTGTACACTGCAGCTGCTGCATCCCGCCATTGTTTCCACCCCGCTTTT
CTAACATCCTGTCACCGACTTGTCCATCACGCGCTCCAAACTTGCATGAA
ACTTGGCGCAGGCAAAACGTAAACCTAGCGATGAAGATGGCACAGACGAT
TGTCGATGTTGCCAAAGCAGACAAATCGACCATGGTGGGCTTGGACGCGA
ATCCGAGCATGGAAGCTGCGTTGGAGGACCTGAAGGTACAGAATAGAACT
TCCCGACTTGTGTTGTGTCTAGACTCCGCCGTTTGGTCCGGCGGTGACTG
TTGCAAGAAGGGGAGGATTATATGTATAAAACGCAGGTTGAGCCAAACTC
TATTGCTTGTATTGGTCACCAGCAGCACTGCCTCTGATAACGCATTATTA
TCGTTTATTTCCCAGGTTCTCGCGGCAATCATCGAGCCCTTTCTGGATGT
GCTTCAAAACCCCGACAAGACCATCACCGACCTTCTACGAGGGCTGGCCC
GCGTCGCCTTCCTGCTCCTGTTCTTGTATAGGGCGGTGAAGACGAACTTC
GTACCGGGGCAGCTCTATCATGACCTCCAGGCGACCATTAGAGCTAAGTT
TCATCTAGTGGGCGAAGCGCAGCGTCTGTGTCCGACAGAAAAGCTGTACC
TGTGGATGGCTGGCACCGATGGACTTGAAAACCTGTTCGCTACGGTACGC
TGCTTGACTCATGCCCGGAACGTCGACGCCAAGGAGCTGGGTGAGCGATT
CAGTAGTGCAATCGGGGTCGAGCAGGTGTTCGAGAAGAAGCCGCACTTGA
AGAGAACTTCCAAGCGCCTCAATGGCTCTGAGAAAGGGCTCCTCGACCAC
ACCAACACCCGCTACTTCGACGACCATGGCCCAGCGAACAACACAGACGT
TCGAGATGTGGACTTGGCTTCATGCTGGTTCGACGGGCGGAGGGATGCCA
TTGCTATTCTTCAGCGCCACCCTTCCTACATGACAAGATTGGACTCGAAC
ATCGTCTCCACCTTGGAGAAGCAGGGTGTCACCATGTTCATGCCGTTCGG
GTAAGCCAAGAGCCCGAGGGTGGGTAGGTTGTGATAGCAAGTGCTTGATT
TTGATGCAAGAGGGGGATACGATGGAGCACGCCGTTTGGTTCGTGTTAGG
AAAACACTCCTCGGGATATGGCTGCGGCGGTCGAGACATGTGGCAGAATA
TCCAACTAATGCAGTGATACTTTCCCTTCGCCGTCGACGTTGTTTTTGTC
TTCACAGCCCTGATGGAGGGTTCCCCGGTATTCGCGGTGAGACTGAAGCC
GCGGGAGATGGAGAGGACTCCAGCGACGAGTCCAACGCGTGTACGGGCGG
ACAGAGTTCGCCCGCGGCCAACGACCCAAGTGTTGAGCTGGATGCCTTCC
TACAAGAAAATGAAAGTGGGGGGCAGGGGTCGTCCTTCTGCGACGTAGAT
GGCAAGAAGGTGTCCAAGCAGAGGGTCCTGACGGAATTTCTGGGACCCCA
CTTCGGGAGCGCGTCGAGGGACCGGTTGAAGCGCGTGCAAGGCCCATCCT
CGGGGCCATCACATGTGGCCGGCTTGCCCGGTGCCGCGCGTGAGAAAATG
GAAGCAGCTGGGATTGGTAGCACGGATGCGCGAGGACTTGATGTCGGCGA
CCCGTTTGTGATGATGGTTTCGACGGGCCCAGGGCGGTACACCCTTGGGC
TTTTCTCTTGCACTGTAGGGCCGACGGAGGACACCAGGACGGGCAGTGGA
CCGGTCATCAAAGGGCGACTGATGAAGCTGACACGCAGCAGGTGTGTGTT
GTCGGCGGGCGAGGGGGTATCCTCTGCAGGTGTCACCCCAGCGACAAACA
GCTCACCCGTTGGGGATTGGTGGGACCACCATGGAGAGCTAGGAATGCAC
AAAGGGGAGCTATCGTGCAAGTCTCGACTCATCATGCCGTTAGATCCGGA
CGTGGTGGTGGAGCCTGTCGCCACAAAGGAGGTGGGGGCACGTCAGGTGG
TCGGCGCGGGGGTTACGGCGGAAGAGATGGTGGAGGAACAAACCATCGTG
GAGCGCACCTGCTTTCGGTTCCGTCTGGACGACTTGGTCGCCCTCAAAAG
CACCCTCGTCGAAGAGTTGGGCGCTATGAAAGCGTGGGATCAACTTCCTC
GTCACAAAGTCGCCAGCGCCGACATCAACCCGCTTCCGCTTCACGAAGAC
CTCCTTCATGTCGAGGCGAGCACTGTGGGCGTGGCTGTGGGAACGGCTGT
GGAAAAGATCGGGTGCAAGCTGTGCCTTAAGCAACTTTCACGGTCCAAAA
TGAGGATGCACATCGGCGGCCACATTTTGAAGGATAAGGTGCGTTTAGCG
TGACTGTTCTGGCCGAGACGTGCGACGTTGGTACATTTTCAAAGGCTGTC
CTTGCTTAATGTGAGTTTGTCTTGCATGCCCGTATCACCCCGTTGCCACG
CATAGAGTGGTCGCAGCCAGTTGGTCGAAGCCTCACCGGCCTTGCATTCT
CTCTCTTTTCCCTACGCAGGCTCTTCAGTTGAGTAGTGTGTGCGGCTTTT
GCGGGGGCTTCGGATGTCGCACCACGATCAAGGCTCGTGGTGGAAAGCAG
GCGGACGTCGTGCACTCCAACTGCCGATATGCTCCTCGGAAGGACGCCCG
TGACGAGGCTGTCCAACTTAGTCTCAAAAGTGCACGAGCAGGTTCCAACA
GCTCACCATGCACCAACATCGTCATCAAGTGCCTCTTCTGCGTGCAGGAG
ACCTTTGTGTGGAAGTATGGCATGGCCGACCACGTCACTCGAGTCCACAA
CACAGACATACTAGTTGACGGCGGCACGGAGGGGGCAAGAAAGTTCAAGG
CGGACTACACAGTCTCTGAGAGTGAGAAGAAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig4948:4414..11145+

>mRNA_L-elsbetiae_contig4948.12914.1 ID=mRNA_L-elsbetiae_contig4948.12914.1|Name=mRNA_L-elsbetiae_contig4948.12914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2658bp|location=Sequence derived from alignment at L-elsbetiae_contig4948:4414..11145+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTTTGGCAAGAACACCGCGCACGCCTCGGCAGAAGAGAACTTGCGGAC
ACATGAACTCGGCATCAGGCACCAAGCGTGTTTGGCAAGAACACCGCGCA
CGCCTCGGCAGAAGAGAACTTGCGGACACATGAACTCGGCATCAGGCACC
AAGCCGCCGTGCGGAAGGCGACCGATGCGGCACCTCAACCCCGGCAACTG
CCGGTGGAAAAGGTAGCAACGAAGAACAGCAGAGGGCAATGGATCTGCGG
GTGCGGCAGGCACCTGAAACGTGGCGAAACCTTGACGGAAAAAAGCATCA
CGGCGCACATCAAGTCTGCCGAGCACAACGCCGTGCGGAAGGCGACCGAT
GCGGCACCTCAACCCCGGCAACTGCCGGTGGAAAAGGTAGCAACGAAGAA
CAGCAGAGGGCAATGGATCTGCGGGTGCGGCAGGCACCTGAAACGTGGCG
AAACCTTGACGGAAAAAAGCATCACGGCGCACATCAAGTCTGCCGAGCAC
AAGAAGTGGGAGGGTGGAGACAAGTCAACGCAGAGGTCTTTGCTCCAATT
TGCGAAGCCCGTGAACGAGAAAGTAGCGGAGACGGCTCCGGCGCCTGCTT
TTGAGGCTCGACCGGCTGTGACACCCTTGCTCGGCACTAACGAACAGGGA
GCTGTCACTCGTGCGGGTGAAGCATGGCCGAGCCCGGGCGCGGGCGCGGA
CACGTGTGAAGATGAGTGCGAAGTAGTGAGCGTGCGTGCACAGTCCACCG
TGCCCCCGCGAGCGCTGCCCACGACGCAACCACCTGCCTCTTCAACAACT
CCATCACGAGCGTGTAGAGGGTACGTACCAGAGCTGGGCAACCCCATGGC
AGCCAATTGGCCCTTTGGCTTGGTGACCGCTAGCCAGCCTTGGGTGACGG
TCGTACGTGACGGGGTTCTGTCGTTGTTCGCGAAGAGCGTCGAGGGAGAG
AACACGGCGGGGTGCGTGGAGACCGTTGCAGGCGAAGGAGACGTTTGCAT
CCCATGCCAACGGCTTCAGGACAACACTCTTCTCAAAGGAAGTGGGAGGG
TGGAGACAAGTCAACGCAGAGGTCTTTGCTCCAATTTGCGAAGCCCGTGA
ACGAGAAAGTAGCGGAGACGGCTCCGGCGCCTGCTTTTGAGGCTCGACCG
GCTGTGACACCCTTGCTCGGCACTAACGAACAGGGAGCTGTCACTCGTGC
GGGTGAAGCATGGCCGAGCCCGGGCGCGGGCGCGGACACGTGTGAAGATG
AGTGCGAAGTAGTGAGCGTGCGTGCACAGTCCACCGTGCCCCCGCGAGCG
CTGCCCACGACGCAACCACCTGCCTCTTCAACAACTCCATCACGAGCGTG
TAGAGGGTACGTACCAGAGCTGGGCAACCCCATGGCAGCCAATTGGCCCT
TTGGCTTGGTGACCGCTAGCCAGCCTTGGGTGACGGTCGTACGTGACGGG
GTTCTGTCGTTGTTCGCGAAGAGCGTCGAGGGAGAGAACACGGCGGGGTG
CGTGGAGACCGTTGCAGGCGAAGGAGACGTTTGCATCCCATGCCAACGGC
TTCAGGACAACACTCTTCTCAAAGTCGCCAGCGCCGACATCAACCCGCTT
CCGCTTCACGAAGACCTCCTTCATGTCGAGGCGAGCACTGTGGGCGTGGC
TGTGGGAACGGCTGTGGAAAAGATCGGGTGCAAGCTGTGCCTTAAGCAAC
TTTCACGGTCCAAAATGAGGATGCACATCGGCGGCCACATTTTGAAGGAT
AAGTCGCCAGCGCCGACATCAACCCGCTTCCGCTTCACGAAGACCTCCTT
CATGTCGAGGCGAGCACTGTGGGCGTGGCTGTGGGAACGGCTGTGGAAAA
GATCGGGTGCAAGCTGTGCCTTAAGCAACTTTCACGGTCCAAAATGAGGA
TGCACATCGGCGGCCACATTTTGAAGGATAAGGCTCTTCAGTTGAGTAGT
GTGTGCGGCTTTTGCGGGGGCTTCGGATGTCGCACCACGATCAAGGCTCG
TGGTGGAAAGCAGGCGGACGTCGTGCACTCCAACTGCCGATATGCTCCTC
GGAAGGACGCCCGTGACGAGGCTGTCCAACTTAGTCTCAAAAGTGCACGA
GCAGGTTCCAACAGCTCACCATGCACCAACATCGTCATCAAGTGCCTCTT
CTGCGTGCAGGAGACCTTTGTGTGGAAGTATGGCATGGCCGACCACGTCA
CTCGAGTCCACAACACAGACATACTAGTTGACGGCGGCACGGAGGGGGCA
AGAAAGTTCAAGGCGGACTACACAGTCTCTGAGAGTGAGAAGAAGGCTCT
TCAGTTGAGTAGTGTGTGCGGCTTTTGCGGGGGCTTCGGATGTCGCACCA
CGATCAAGGCTCGTGGTGGAAAGCAGGCGGACGTCGTGCACTCCAACTGC
CGATATGCTCCTCGGAAGGACGCCCGTGACGAGGCTGTCCAACTTAGTCT
CAAAAGTGCACGAGCAGGTTCCAACAGCTCACCATGCACCAACATCGTCA
TCAAGTGCCTCTTCTGCGTGCAGGAGACCTTTGTGTGGAAGTATGGCATG
GCCGACCACGTCACTCGAGTCCACAACACAGACATACTAGTTGACGGCGG
CACGGAGGGGGCAAGAAAGTTCAAGGCGGACTACACAGTCTCTGAGAGTG
AGAAGAAG
back to top