mRNA_L-elsbetiae_contig4937.12897.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4937.12897.1
Unique NamemRNA_L-elsbetiae_contig4937.12897.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4937.12897.1 vs. uniprot
Match: D7G8Q9_ECTSI (Ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q9_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 1.850e-88
Identity = 172/194 (88.66%), Postives = 179/194 (92.27%), Query Frame = 3 
Query:  357 NGTVAFEMALEQIIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMKRTTIAKDFEAKQANPSGTLDRTMDSEAPLAATVVGTTGGSGADWSGNGIAADQFASKDELGELRQAMAMKDKELRDIRDRVQDKEGELDTLRKAGKNXXXXXXXXXXETRGIMDRLSRMEDAARKVSAG-GGCNCTVM 935
            N  VA+EMALEQIIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMKRTTIAKDFEAKQANP G LDRT+ +E PLA  + GTT  SGADWSGNGIAADQFASKDELGELRQA+AMKDKELRDIRDR+QDKEGELDTLRKAGKNXXXXXXXXXX TRGIMDRLSRMED ARKVSA  GGCNCT+M
Sbjct:  484 NEEVAYEMALEQIIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMKRTTIAKDFEAKQANPDGALDRTLGNEPPLAPNLGGTTAASGADWSGNGIAADQFASKDELGELRQAVAMKDKELRDIRDRMQDKEGELDTLRKAGKNXXXXXXXXXXXTRGIMDRLSRMEDTARKVSAASGGCNCTIM 677
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BLAST of mRNA_L-elsbetiae_contig4937.12897.1 vs. uniprot
Match: A0A835ZGN2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGN2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.840e-7
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 3 
Query:  366 VAFEMALEQ----IIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMK--RTTIAKDFEAKQANPSGTLDRTMDSEAPLAATVVGTTGGSGADWSGNGIAADQFASKDELGELRQAMAMKDKELRDIRDRVQDKEGELDTLRKAGKN 815
            +A++MALEQ    +IA L+DLE +V+N+  DQ  NED+L++V+ R    E+ + K+K     +A    A  A P+ T D   D  A  A       GGS              AS  E+GELR  +  +++E R +  RV++ +GELD LRKA +N
Sbjct:  653 IAYDMALEQRCRQVIATLEDLETKVDNIGTDQSANEDMLMDVVSRTGMVERGMAKLKIELQELATRAPAAAAAPAPTTD--ADDSAQTA------DGGS------------PRASAGEVGELRAHLLGREREARAVHARVEELDGELDMLRKASRN 788
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4937.12897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Q9_ECTSI1.850e-8888.66Ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835ZGN2_9STRA1.840e-736.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4937contigL-elsbetiae_contig4937:9772..12220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.8
Seed ortholog evalue4.5e-76
Seed eggNOG ortholog2880.D7G8Q9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-22_002660.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1596
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4937.12897.1prot_L-elsbetiae_contig4937.12897.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4937 10430..11843 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816491.9965606-UTR-L-elsbetiae_contig4937:9771..104291622816491.9965606-UTR-L-elsbetiae_contig4937:9771..10429Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4937 9772..10429 -
1691683598.396455-UTR-L-elsbetiae_contig4937:9771..104291691683598.396455-UTR-L-elsbetiae_contig4937:9771..10429Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4937 9772..10429 -
1622816492.0607765-UTR-L-elsbetiae_contig4937:11843..122201622816492.0607765-UTR-L-elsbetiae_contig4937:11843..12220Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4937 11844..12220 -
1691683598.4497244-UTR-L-elsbetiae_contig4937:11843..122201691683598.4497244-UTR-L-elsbetiae_contig4937:11843..12220Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4937 11844..12220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816492.0086172-CDS-L-elsbetiae_contig4937:10429..104981622816492.0086172-CDS-L-elsbetiae_contig4937:10429..10498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4937 10430..10498 -
1691683598.4106405-CDS-L-elsbetiae_contig4937:10429..104981691683598.4106405-CDS-L-elsbetiae_contig4937:10429..10498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4937 10430..10498 -
1622816492.0217965-CDS-L-elsbetiae_contig4937:10682..108171622816492.0217965-CDS-L-elsbetiae_contig4937:10682..10817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4937 10683..10817 -
1691683598.4202392-CDS-L-elsbetiae_contig4937:10682..108171691683598.4202392-CDS-L-elsbetiae_contig4937:10682..10817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4937 10683..10817 -
1622816492.0345864-CDS-L-elsbetiae_contig4937:11104..113201622816492.0345864-CDS-L-elsbetiae_contig4937:11104..11320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4937 11105..11320 -
1691683598.4295747-CDS-L-elsbetiae_contig4937:11104..113201691683598.4295747-CDS-L-elsbetiae_contig4937:11104..11320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4937 11105..11320 -
1622816492.0476425-CDS-L-elsbetiae_contig4937:11702..118431622816492.0476425-CDS-L-elsbetiae_contig4937:11702..11843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4937 11703..11843 -
1691683598.4395323-CDS-L-elsbetiae_contig4937:11702..118431691683598.4395323-CDS-L-elsbetiae_contig4937:11702..11843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4937 11703..11843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4937.12897.1

>prot_L-elsbetiae_contig4937.12897.1 ID=prot_L-elsbetiae_contig4937.12897.1|Name=mRNA_L-elsbetiae_contig4937.12897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
MALEQIIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMKR
TTIAKDFEAKQANPSGTLDRTMDSEAPLAATVVGTTGGSGADWSGNGIAA
DQFASKDELGELRQAMAMKDKELRDIRDRVQDKEGELDTLRKAGKNLRER
LDEKEVETRGIMDRLSRMEDAARKVSAGGGCNCTVM*
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mRNA from alignment at L-elsbetiae_contig4937:9772..12220-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4937.12897.1 ID=mRNA_L-elsbetiae_contig4937.12897.1|Name=mRNA_L-elsbetiae_contig4937.12897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2449bp|location=Sequence derived from alignment at L-elsbetiae_contig4937:9772..12220- (Laminarionema elsbetiae ELsaHSoW15)
CTTCTCGCGACAAAAATCTTAGGTAAGTACCGCAGACGGGGGAGTGGGGG
CCTTGGGGAAAAGAACCCTTCTGTGTGACACGGTTGAGCACTCTGGCAAG
ACGTCCTCGTGACAGGGAGCTCATCGAGCACTGGAAATAAATGTGAAGAA
GAAAAGAAGAAAATAGAGGGAGTTTGCGCCGCACAGCAGGTAACCGTCAT
TCCCTTAGTGTGCTGCTGAGTATCACCCATTTTCCCGCCCCTCGAGGTAT
AAACTCCATATTGACGTCCCGGCGCCAGTTTTTCGAGTGTACAAAGTGTA
CAACCCCAACCCTATCTATTTTATTTGTTTCTGATCGTGTGTAACCCTCC
CGTATCAATGGTACAGTCGCGTTCGAGATGGCGTTGGAGCAGATAATTGC
GGACCTGGACGACCTGGAGGAACGCGTGGAGAACCTCAACGTGGACCAGA
AAACCAACGAGGACATTCTTCTAAACGTGTTGAAGAGGGTCGACGAGACG
GAGAAAGACCTCAGGAAGGTGTGAGGTGTTTCCATATGGTGCCTGTGTAG
CCCGATGGATGGGGTGTACGTGGCCTCGGTTGGGTTTTACGATTTCACGA
CACGGTCGTGAGAGCCAAAATGTTTAAAATTTTTGGACCCCGGAGCTTGT
GGCACCCTACGTCAAGCTGATGGACCTTCTCTTCCGCGCTGGCTGGCGGT
CGACCGCCTCATGTGTCCTTTATGACACATTGGTATTCAGCTGATTTGGA
AGAATTCCTACTTCGAAGTAGTTTTTGTGAACGTATTAATACCTTCGGCG
ACGGTTCGAAACTAGAACGTGATCCGAGCTCCTCCTGGTGTTCGGTATTC
AGTTGCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGTCGATGATAG
ATGAAACGTACGACGATCGCCAAAGATTTCGAGGCGAAGCAAGCCAACCC
GAGCGGCACGCTTGACCGCACGATGGACAGCGAGGCACCGCTGGCTGCAA
CCGTTGTTGGAACCACGGGGGGGTCCGGCGCTGACTGGTCGGGTAATGGC
ATTGCCGCTGACCAGTTTGCGAGTAAGGACGAGCTGGGGGAGCTGAGACA
AGCAATGGCGATGAAGGTTGGTGACTTGTGTAGGCCTTACGTTGTTTTCC
GCTCCCCTCTGCAGTCTAGCATGACGTCTTTTTGCGCTCTGATGCGCATG
CTGCTCAGAGCGTTTTTGTCGCAACATCCAGCCCAATTCAAGCGTTGGAC
GCGCGAGCCCACATACAAGTGCCTACAACCATAATGCTTTTCCAAACTCG
TGGTGAAATGTATTGCGTCTCTTGCCCTATAAATGCAGTGCAGAGTCTAA
CTGCGATGCTTGCCGGAATTCGTAATGTGATGAATTGTACCTCTGGTGTG
CAGGACAAGGAGTTACGGGATATTCGAGACCGGGTGCAGGACAAGGAGGG
AGAGTTGGACACTCTGCGGAAAGCGGGAAAGAACCTCAGAGAACGGCTTG
ACGAGAAGGAGGTGGAAACCCGTGGCATTATGGACCGGGTGAGCCCTTTA
AAAAGGATTGTTGTATATAGGGGCCTGTTGTCGGTTGTGTCTCACTCTCG
CCCACATGACCTGCCTACCTACCTACATATACCCGCGATATCTCCTCACG
CGTGTAAATGACACCGCGGCTGTTAACTTTCTCCCATCCCCACGCCGCCC
GCCTCTGCTACTGTGCTTACAGCTTTCCCGCATGGAGGACGCTGCCCGAA
AGGTCTCGGCGGGGGGGGGGTGTAATTGTACTGTGATGTGATGTTCCCCG
TCGCACTTTTAACGCGAAAATAAGCAGCTGCCAAAGGGTGCCGGCCGGAC
AATCCTCGCCGCCTTTCGCTGGTGCGGGGTTAAGGGCTGTACTTGATAGC
ATACGTGTGTTTATGCCGTCTTTTCTAAGACAGGATACGAAGCTTTAGTA
CGAGCAGGTGCTTTCGCGTAGAACATATTTAGTAGAACCCGTGTTCGTGC
AGGTACCATTTAGGTGCCAAAGCACTTAGAGAAGGCGTTCCCTCGAGAGC
GGGTATATTAATTGTTTTGGATATTACTGCTGTACAAAAAGATCTTGCGA
TCGGTCCGCCCCTCTAGTATTTTCACCTTGCCAGGAGTAGACTCGTGTTA
CCTCTGCAAATCCTGTGGGTCGAGACGACGATTAAATTTACTCTTTCGTA
GCCGACTCTCGCGTGGCTCAGACTTTGCTAGGGTTTGGGCCTTTTCTTTT
TCTTTGTTGTCGTGTGTGTTGTAGTACATACAGAGTGTTTCGTCGAATGC
CGATGGTGCGTTGTGAAAGACGCTACTAAATTTTAGGCCCTAAACGTAGC
ATGTTGTGTGGTGCACGCTACAAATTTTTTAGGAATTTTTAGCCAAGATA
ACTAGACAGCAGCAGTGATCCATTGAGTTCGCGCCGGGAACGTGTCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4937:9772..12220-

>mRNA_L-elsbetiae_contig4937.12897.1 ID=mRNA_L-elsbetiae_contig4937.12897.1|Name=mRNA_L-elsbetiae_contig4937.12897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig4937:9772..12220- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTTGGAGCAGATAATTGCGGACCTGGACGACCTGGAGGAACGCGT
GGAGAACCTCAACGTGGACCAGAAAACCAACGAGGACATTCTTCTAAACG
TGTTGAAGAGGGTCGACGAGACGGAGAAAGACCTCAGGAAGATGGCGTTG
GAGCAGATAATTGCGGACCTGGACGACCTGGAGGAACGCGTGGAGAACCT
CAACGTGGACCAGAAAACCAACGAGGACATTCTTCTAAACGTGTTGAAGA
GGGTCGACGAGACGGAGAAAGACCTCAGGAAGATGAAACGTACGACGATC
GCCAAAGATTTCGAGGCGAAGCAAGCCAACCCGAGCGGCACGCTTGACCG
CACGATGGACAGCGAGGCACCGCTGGCTGCAACCGTTGTTGGAACCACGG
GGGGGTCCGGCGCTGACTGGTCGGGTAATGGCATTGCCGCTGACCAGTTT
GCGAGTAAGGACGAGCTGGGGGAGCTGAGACAAGCAATGGCGATGAAGAT
GAAACGTACGACGATCGCCAAAGATTTCGAGGCGAAGCAAGCCAACCCGA
GCGGCACGCTTGACCGCACGATGGACAGCGAGGCACCGCTGGCTGCAACC
GTTGTTGGAACCACGGGGGGGTCCGGCGCTGACTGGTCGGGTAATGGCAT
TGCCGCTGACCAGTTTGCGAGTAAGGACGAGCTGGGGGAGCTGAGACAAG
CAATGGCGATGAAGGACAAGGAGTTACGGGATATTCGAGACCGGGTGCAG
GACAAGGAGGGAGAGTTGGACACTCTGCGGAAAGCGGGAAAGAACCTCAG
AGAACGGCTTGACGAGAAGGAGGTGGAAACCCGTGGCATTATGGACCGGG
ACAAGGAGTTACGGGATATTCGAGACCGGGTGCAGGACAAGGAGGGAGAG
TTGGACACTCTGCGGAAAGCGGGAAAGAACCTCAGAGAACGGCTTGACGA
GAAGGAGGTGGAAACCCGTGGCATTATGGACCGGCTTTCCCGCATGGAGG
ACGCTGCCCGAAAGGTCTCGGCGGGGGGGGGGTGTAATTGTACTGTGATG
TGACTTTCCCGCATGGAGGACGCTGCCCGAAAGGTCTCGGCGGGGGGGGG
GTGTAATTGTACTGTGATGTGA
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