mRNA_L-elsbetiae_contig4931.12892.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4931.12892.1
Unique NamemRNA_L-elsbetiae_contig4931.12892.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4931.12892.1 vs. uniprot
Match: A0A6H5JZS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZS1_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.140e-36
Identity = 78/99 (78.79%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    7 KMRVEAARLVRALCNGSDLTLQTLISCGGLSVLAH----GGPGLGPGGEGEEEGEGVDDARRLVRIGIDGVLKVFSLQRIRRNDFCKLFLRLGLMPRVM 291
            +MRVEAARLVR LCNGSDLTLQTLISCGGLSVLA     GGP +      + EG    DARRLVRIGIDGVLKVFSLQRIRRNDFCKLFLRLGLMPRVM
Sbjct:  544 RMRVEAARLVRTLCNGSDLTLQTLISCGGLSVLAQFLAAGGPRI------DSEGVRGADARRLVRIGIDGVLKVFSLQRIRRNDFCKLFLRLGLMPRVM 636
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BLAST of mRNA_L-elsbetiae_contig4931.12892.1 vs. uniprot
Match: G4Z5J0_PHYSP (Protein kinase domain-containing protein (Fragment) n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z5J0_PHYSP)

HSP 1 Score: 72.4 bits (176), Expect = 9.880e-13
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:   10 MRVEAARLVRALCNGSDLTLQTLISCGGLSVLAHGGPGLGPGGEGEEEGEGVDDARRLVRIGIDGVLKVFSLQRIRRNDFCKLFLRLGLMPRVMV 294
            +R+EAA+ VR  C  S LTLQ  I+CGGL VL      L  G +     E VD    L+RI +DG+  VFS+Q I +ND C+LF++ GL+ + +V
Sbjct:  672 VRMEAAKFVRQCCKTSSLTLQMFIACGGLPVLVD---FLTLGDKSSSLDEDVD----LLRIALDGIFSVFSIQTIPKNDICRLFVKAGLLKKFVV 759
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BLAST of mRNA_L-elsbetiae_contig4931.12892.1 vs. uniprot
Match: A0A2D4BJN7_PYTIN (Ser/thr kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJN7_PYTIN)

HSP 1 Score: 70.9 bits (172), Expect = 3.440e-12
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    1 SEKMRVEAARLVRALCNGSDLTLQTLISCGGLSVLAHGGPGLGPGGEGEEEGEGVDDARRLVRIGIDGVLKVFSLQRIRRNDFCKLFLRLGLMPRVMV 294
            S  +R+EAA+ VR     S LTLQ  I+CGGLSVL              +    VDD R L+RI ++GV+ VF LQ I +ND C+LF++ GL+ + +V
Sbjct:  644 SADVRLEAAKFVRQSVKTSSLTLQMFIACGGLSVLVDFLT--------VDYSRPVDDQRDLLRIALEGVVGVFQLQTIPKNDICRLFVKAGLLRKFVV 733
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BLAST of mRNA_L-elsbetiae_contig4931.12892.1 vs. uniprot
Match: A0A225W9D4_9STRA (STE/STE11/CDC15 protein kinase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W9D4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.530e-12
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:   10 MRVEAARLVRALCNGSDLTLQTLISCGGLSVLAHGGPGLGPGGEGEEEGEGVDDARRLVRIGIDGVLKVFSLQRIRRNDFCKLFLRLGLMPRVMV 294
            +R+EAA+ VR  C  S LTLQ  I+CGGL VL              +    VDD    +RI +DG+  VFS+Q I +ND C+LF++ GL+ + +V
Sbjct: 1591 VRMEAAKFVRQCCKTSSLTLQMFIACGGLPVLVDFLT--------LDNTPNVDDDADQLRIALDGIFSVFSIQTIPKNDICRLFVKAGLLKKFVV 1677
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BLAST of mRNA_L-elsbetiae_contig4931.12892.1 vs. uniprot
Match: M4BTC9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTC9_HYAAE)

HSP 1 Score: 69.7 bits (169), Expect = 8.550e-12
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:   10 MRVEAARLVRALCNGSDLTLQTLISCGGLSVLAHGGPGLGPGGEGEEEGEGVDDARRLVRIGIDGVLKVFSLQRIRRNDFCKLFLRLGLMPRVMV 294
            +R+EAA+ V+  C  S LTLQ  I+CGGL VL      L      EE+   +D    L+RI +DG+  +FS+Q I +ND C+LF++ GL+ + +V
Sbjct:  237 VRLEAAKFVQQCCKTSSLTLQMFIACGGLPVLVD---FLTL----EEKSSNLDHDVSLLRIALDGISSIFSIQTIPKNDICRLFVKAGLLKKFVV 324
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BLAST of mRNA_L-elsbetiae_contig4931.12892.1 vs. uniprot
Match: H3GT27_PHYRM (Protein kinase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GT27_PHYRM)

HSP 1 Score: 68.6 bits (166), Expect = 2.240e-11
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:   10 MRVEAARLVRALCNGSDLTLQTLISCGGLSVLAHGGPGLGPGGEGEEEGEGVDDARRLVRIGIDGVLKVFSLQRIRRNDFCKLFLRLGLMPRVMV 294
            +R+EAA+ VR  C  S LTLQ  I+CGGL VL      L      E++   ++D    +R+ +DG+  VFS+Q I +ND C+LF++ GL+ + +V
Sbjct:  737 VRMEAAKFVRQCCKTSSLTLQMFIACGGLPVLVD---FLTL----EDKPSNLNDDVDTLRVALDGIFSVFSIQTIPKNDICRLFVKAGLLKKFVV 824
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BLAST of mRNA_L-elsbetiae_contig4931.12892.1 vs. uniprot
Match: A0A5D6YB18_9STRA (Protein kinase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB18_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.160e-11
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:   10 MRVEAARLVRALCNGSDLTLQTLISCGGLSVLAHGGPGLGPGGEGEEEGEGVDDARRLVRIGIDGVLKVFSLQRIRRNDFCKLFLRLGLMPRVMV 294
            +R+EAA+ VR  C  S LTLQ  I+CGGL VL    P        +      D    L+RI ++G+  VFSLQ I +ND C+LF++ GL+ + +V
Sbjct:  679 VRLEAAKFVRQSCKTSSLTLQMFIACGGLPVLVDFLPLAA-----DRAAPISDSGLGLLRIALEGISSVFSLQTIPKNDICRLFVKAGLLRKFVV 768
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BLAST of mRNA_L-elsbetiae_contig4931.12892.1 vs. uniprot
Match: A0A3M6VLV2_9STRA (Protein kinase domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VLV2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.690e-11
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:   10 MRVEAARLVRALCNGSDLTLQTLISCGGLSVLAHGGPGLGPGGEGEEEGEGVDDARRLVRIGIDGVLKVFSLQRIRRNDFCKLFLRLGLMPRVMV 294
            +R+EAA+ VR  C  S LTLQ  I+CGGL VL      L      E++   + +   L+RI +DG+  VFS+Q I +ND C+LF++ GL+ + +V
Sbjct:  736 VRMEAAKFVRQCCKTSSLTLQMFIACGGLPVLVD---FLTL----EKQLSNLGNDMDLLRIALDGISSVFSIQTIPKNDICRLFVKAGLLKKFVV 823
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BLAST of mRNA_L-elsbetiae_contig4931.12892.1 vs. uniprot
Match: A0A329T5J9_9STRA (Protein kinase domain-containing protein n=23 Tax=Phytophthora TaxID=4783 RepID=A0A329T5J9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.060e-10
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:   10 MRVEAARLVRALCNGSDLTLQTLISCGGLSVLAHGGPGLGPGGEGEEEGEGVDDARRLVRIGIDGVLKVFSLQRIRRNDFCKLFLRLGLMPR 285
            +R+EAA+ VR  C  S LTLQ  I+CGGL VL      L    +       VD    L+RI +DG+  VFS+Q I +ND C+LF++ GL+ +
Sbjct:  726 VRMEAAKFVRQCCKTSSLTLQMFIACGGLPVLVD---FLTLDDKPSNREHDVD----LLRIALDGIFSVFSIQTIPKNDICRLFVKAGLLKK 810
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BLAST of mRNA_L-elsbetiae_contig4931.12892.1 vs. uniprot
Match: A0A0P1ANM5_PLAHL (Ste ste11 cdc15 protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ANM5_PLAHL)

HSP 1 Score: 65.1 bits (157), Expect = 3.690e-10
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:   10 MRVEAARLVRALCNGSDLTLQTLISCGGLSVLAHGGPGLGPGGEGEEEGEGVDDARRLVRIGIDGVLKVFSLQRIRRNDFCKLFLRLGLMPR 285
            +R+EAA+ VR  C  S LTLQ  I+CGGL VL      L    +     + VD    LVRI +DG+  VFS+Q I +ND C+LF++ GL+ +
Sbjct:  727 VRMEAAKFVRQCCKTSSLTLQMFIACGGLPVLVD---FLTLTNQLSSLEQDVD----LVRIALDGISCVFSIQTIPKNDICRLFVKAGLLKK 811
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4931.12892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZS1_9PHAE3.140e-3678.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
G4Z5J0_PHYSP9.880e-1344.21Protein kinase domain-containing protein (Fragment... [more]
A0A2D4BJN7_PYTIN3.440e-1242.86Ser/thr kinase n=1 Tax=Pythium insidiosum TaxID=11... [more]
A0A225W9D4_9STRA6.530e-1241.05STE/STE11/CDC15 protein kinase n=1 Tax=Phytophthor... [more]
M4BTC9_HYAAE8.550e-1241.05Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
H3GT27_PHYRM2.240e-1140.00Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A5D6YB18_9STRA4.160e-1141.05Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A3M6VLV2_9STRA5.690e-1141.05Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A329T5J9_9STRA1.060e-1042.39Protein kinase domain-containing protein n=23 Tax=... [more]
A0A0P1ANM5_PLAHL3.690e-1043.48Ste ste11 cdc15 protein kinase n=1 Tax=Plasmopara ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4931contigL-elsbetiae_contig4931:66..449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue2.6e-11
Seed eggNOG ortholog115417.EPrPW00000018298
Preferred nameCDC15
KEGG koko:K06683
KEGG Pathwayko04111,ko04113,ko04392,map04111,map04113,map04392
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0000912,GO:0000915,GO:0001558,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005813,GO:0005815,GO:0005816,GO:0005829,GO:0005856,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007049,GO:0007088,GO:0007096,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007346,GO:0008150,GO:0008152,GO:0008361,GO:0009893,GO:0009987,GO:0010324,GO:0010562,GO:0010564,GO:0010604,GO:0010941,GO:0010973,GO:0015630,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019220,GO:0019222,GO:0019538,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0023014,GO:0023052,GO:0030029,GO:0030036,GO:0030587,GO:0030865,GO:0030866,GO:0031028,GO:0031032,GO:0031098,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0031991,GO:0032147,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0032502,GO:0032506,GO:0032535,GO:0032879,GO:0032880,GO:0032954,GO:0032955,GO:0032956,GO:0032970,GO:0033043,GO:0033554,GO:0033674,GO:0035556,GO:0036089,GO:0036211,GO:0040008,GO:0042325,GO:0042327,GO:0042981,GO:0043067,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043549,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044732,GO:0044837,GO:0045787,GO:0045859,GO:0045860,GO:0045931,GO:0045937,GO:0045995,GO:0046777,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051301,GO:0051302,GO:0051338,GO:0051347,GO:0051493,GO:0051510,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0060255,GO:0060341,GO:0061024,GO:0061387,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0071958,GO:0080090,GO:0090066,GO:0090068,GO:0090702,GO:0099024,GO:0099120,GO:0110020,GO:0140096,GO:1901564,GO:1901891,GO:1901893,GO:1901987,GO:1901990,GO:1902363,GO:1902412,GO:1902542,GO:1903047,GO:1903436,GO:1903438,GO:1903490,GO:1903827,GO:2000026
EggNOG free text desc.Ser thr kinase. Source PGD
EggNOG OGs1MEPA@121069,KOG0198@1,KOG0198@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size294
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4931.12892.1prot_L-elsbetiae_contig4931.12892.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4931 75..449 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816491.3824809-UTR-L-elsbetiae_contig4931:65..741622816491.3824809-UTR-L-elsbetiae_contig4931:65..74Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4931 66..74 +
1691683597.9624982-UTR-L-elsbetiae_contig4931:65..741691683597.9624982-UTR-L-elsbetiae_contig4931:65..74Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4931 66..74 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816491.3954408-CDS-L-elsbetiae_contig4931:74..1751622816491.3954408-CDS-L-elsbetiae_contig4931:74..175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4931 75..175 +
1691683597.9753911-CDS-L-elsbetiae_contig4931:74..1751691683597.9753911-CDS-L-elsbetiae_contig4931:74..175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4931 75..175 +
1622816491.413623-CDS-L-elsbetiae_contig4931:265..4491622816491.413623-CDS-L-elsbetiae_contig4931:265..449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4931 266..449 +
1691683597.991023-CDS-L-elsbetiae_contig4931:265..4491691683597.991023-CDS-L-elsbetiae_contig4931:265..449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4931 266..449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4931.12892.1

>prot_L-elsbetiae_contig4931.12892.1 ID=prot_L-elsbetiae_contig4931.12892.1|Name=mRNA_L-elsbetiae_contig4931.12892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MRVEAARLVRALCNGSDLTLQTLISCGGLSVLAHGGPGLGPGGEGEEEGE
GVDDARRLVRIGIDGVLKVFSLQRIRRNDFCKLFLRLGLMPRVMV
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mRNA from alignment at L-elsbetiae_contig4931:66..449+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4931.12892.1 ID=mRNA_L-elsbetiae_contig4931.12892.1|Name=mRNA_L-elsbetiae_contig4931.12892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig4931:66..449+ (Laminarionema elsbetiae ELsaHSoW15)
TCGGAGAAGATGCGCGTGGAAGCCGCCCGCCTCGTCCGGGCTCTCTGCAA
CGGCTCCGACCTGACCCTCCAGACGCTCATCTCCTGCGGCGGGCTATCCG
TGCTGGCGCAGTTCCTGGGGGCCGGCCCGAGGATAGGCGGCGCCAGCGGC
GGCGGCGGCGCCAGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCTGCAG
CGGTGGGCCGGGGCTGGGGCCGGGGGGAGAGGGGGAGGAGGAGGGGGAGG
GGGTGGACGACGCCCGGCGACTCGTCCGCATCGGCATCGACGGCGTGCTC
AAGGTGTTTTCTCTGCAGCGCATCCGCCGCAACGACTTCTGCAAGCTCTT
CCTCCGCCTGGGCCTCATGCCACGAGTCATGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4931:66..449+

>mRNA_L-elsbetiae_contig4931.12892.1 ID=mRNA_L-elsbetiae_contig4931.12892.1|Name=mRNA_L-elsbetiae_contig4931.12892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig4931:66..449+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCGTGGAAGCCGCCCGCCTCGTCCGGGCTCTCTGCAACGGCTCCGA
CCTGACCCTCCAGACGCTCATCTCCTGCGGCGGGCTATCCGTGCTGGCGC
AATGCGCGTGGAAGCCGCCCGCCTCGTCCGGGCTCTCTGCAACGGCTCCG
ACCTGACCCTCCAGACGCTCATCTCCTGCGGCGGGCTATCCGTGCTGGCG
CACGGTGGGCCGGGGCTGGGGCCGGGGGGAGAGGGGGAGGAGGAGGGGGA
GGGGGTGGACGACGCCCGGCGACTCGTCCGCATCGGCATCGACGGCGTGC
TCAAGGTGTTTTCTCTGCAGCGCATCCGCCGCAACGACTTCTGCAAGCTC
TTCCTCCGCCTGGGCCTCATGCCACGAGTCATGGTGCGGTGGGCCGGGGC
TGGGGCCGGGGGGAGAGGGGGAGGAGGAGGGGGAGGGGGTGGACGACGCC
CGGCGACTCGTCCGCATCGGCATCGACGGCGTGCTCAAGGTGTTTTCTCT
GCAGCGCATCCGCCGCAACGACTTCTGCAAGCTCTTCCTCCGCCTGGGCC
TCATGCCACGAGTCATGGTG
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