mRNA_L-elsbetiae_contig493.12890.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig493.12890.1 vs. uniprot
Match: D7FSW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW4_ECTSI) HSP 1 Score: 500 bits (1288), Expect = 1.480e-158 Identity = 410/923 (44.42%), Postives = 482/923 (52.22%), Query Frame = 1
Query: 499 FGTPK-LMELMEERDRAVHLCLQYRCKLKNTEGSLRAEERLASDLKSQLREANAAGEATRKLFDQVMDKVRADEGRKLRQKTDTQQGKQARTQRLNAYFAEEARKTRLQLVRARKDLRELWLERDELAMLAGQAIQGEQATYKRIKELEVATACLREQVAMLALSEQKAAEKTAHAEAKVIAAEAAERELRIAVEAIKHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASYDRNRRRQSSAKVGKSGDGKRTAVFPARRVISEDGVGGEEAEGLLERRA----PSVHR-------RTAGVPATQEDGVGGVAVPNAQRKNLGHSGSIVTTESVAPVSLPARKQLTPQTSEIPGRVTTVSYPRCGSRVTFTPHAAPTTTAPATGKAS-------GMVGSV-EEADV-------------QRGEETAASPVLDQVAGRMPND----LGWLARRNEESEDAQQ----SPGLMCDAPSDHISLEHSSSFQDARQPPCPLSEKALP---DEHPTC----STAVEM-------PDDANVNLGAAVEGTEDVGRKDVXHXXXXXXXXDGAMQTEGRESAECRESSDGLPFPGDGEVEGVG--CAGHGEPDCMKXXXXXXXXXXXXSAARLGLEVDVELPLLVPPRLDDMGAESETPVFRSRLVDGVPVLKYGGGGRGKPKPKVLWVTPDLSEIFYTQAGRTKNSKKSSHMPLAGLCISRGRRDCPDLLRAPTDDRCFALVQADCLAGDDQKGGGDREKNGDEGNDTDGGGGS--------PAPGRRKWGIGGTLPADLAHGKRWRGGADAGWMGVATAGRLSASSTPGGVAAAAATTGT----AANRRANAGA-RERMGLETASTEECTALVDEINELVRRAGLKHGAGGSSSRGRDLFDEWVMQSAEARRGADADAGAEADVA 3057
GTPK L+EL+E+RDRA+HLCLQYRCKL+NTEGSLRAEERLAS+LK QLREANAAGEATRKLFDQVMDKVRADEGRK+RQ +++ ++ NA +AE+ARK RLQL RARKDLRELWLERDELA LAGQAIQGEQA KRIK+LE+ + LREQVA LALSE +AAE+ A A AVE IK D P R R + GD +R V P R ++ + G + L + R PS R T + Q+ G G KN G + +V V PARKQL P+ SEIPGRV +SYPR +RVTF P TT PA AS VG + EE + E ++P +VAG + +D L + EE A + SPG C P S H RQP C SE A P D PT +T V + P+D V LG+A GTE + E RE A+ S++G+P P ++ G EP K S A G+E E P L R D A FR RLV+GVPVLKYGG RGKPK K+LWVTPDLSEIFYTQAGRTKNSKKSSHMPLAGLC S+GR D P+ R+ TDDRCFALVQA G D D++ PAPGRRKWGIGGTLPA+L HG+RWRGG + RL AS+T AA ++ AGA RERM LET + EECTALVDEINELVRRAGL+ G GGSS+RGRDLFDEWV +SA R D GA + A
Sbjct: 1 MGTPKKLLELIEDRDRALHLCLQYRCKLRNTEGSLRAEERLASELKGQLREANAAGEATRKLFDQVMDKVRADEGRKIRQAASSREDDKS-----NARYAEDARKGRLQLTRARKDLRELWLERDELAKLAGQAIQGEQAGSKRIKKLELVVSSLREQVAALALSEHRAAEEAARAXXXXXXXXXXXXXXXXAVEGIKTDFEALVHELRIREKQIRQMEAKNATLAVKSLPTSPTPRGHTRSRSPAETGNAEGDNQR--VSPRTRRMTPESKGCVRVKELRKSRNSRVDPSPARAKEATSLNTQALAHPQKRGKRGEEAGIPPGKN-GRRSNAPPAAAVPSVVYPARKQLAPRKSEIPGRVMAMSYPRGVNRVTFMPSNTHVTTPPARVPASVPARETVRPVGPILEEGNCCMEXXXXXXXXXXXXXXEVCSAPT--EVAGTVTDDGRRPEAQLDQSGEEKSGAPETSPPSPGQDCAVPPQSPSPRH------CRQPACTFSETAAPPASDPRPTVGMSNTTEVALADLGGAAPEDGVVGLGSA-GGTERL-----------------TTDAETREGAD-NASAEGVPPPPLAQIASTGRFSGDDDEPGEEKSTPHGGKIEEAKSEAGHGIEATPEQPGLEEGRRDPDAA-----AFRPRLVEGVPVLKYGG--RGKPKAKMLWVTPDLSEIFYTQAGRTKNSKKSSHMPLAGLCASKGRGDHPEPARSTTDDRCFALVQAADSLGHDNPHHKDKDXXXXXXXXXXXXXXXXXXXXXXXPAPGRRKWGIGGTLPANLVHGRRWRGGPGSAATTTGPTERLGASATSAXXXXXXXXXXXXXXXAAPQQHPAGATRERMVLETTNAEECTALVDEINELVRRAGLQRGGGGSSARGRDLFDEWV-RSAVGRDAQAVDPGANGEAA 880
BLAST of mRNA_L-elsbetiae_contig493.12890.1 vs. uniprot
Match: A0A6H5LEL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEL5_9PHAE) HSP 1 Score: 372 bits (954), Expect = 2.340e-110 Identity = 355/971 (36.56%), Postives = 420/971 (43.25%), Query Frame = 1
Query: 511 KLMELMEERDRAVHLCLQ----------------------------------------------YRCKLKNTEGSLRAEERLASDLKSQLREANAAGEATRKLFDQVMDKVRADEGRKLRQKTDTQQGKQARTQRLNAYFAEEARKTRLQLVRARKDLRELWLERDELAMLAGQAIQGEQATYKRIKELEVATACLREQVAMLALSEQKAAEKTAHAEAKVIAAEAAERELRIAVEAIKHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASYDRNRRRQSSAKVGKSGDGKRTAVFPARRVISEDGVGGEEAEGLLERRAPSVHRRTAGVPATQEDGVGGVAVPNAQRKN----------LGHSGSIVTTESVAPVSLPARKQLTPQTSEIPGRVTTVSYPRCGSRVTFTPHAAPTTTAPAT-------GKASGMVGSV-EEADVQR-----------GEETAASPVLDQVAGRMPND----LGWLARRNEESEDA-QQSPGLMCDAPSDHISLEHSSSF-QDARQPPCPLSEKALP---DEHPTC--STAVEM---------PDDANVNLGAAVEGTEDVGRKDVXHXXXXXXXXDGAMQTEGRESAECRESSDGLPFPGDGEVEGVGCAGHGEPDCMKXXXXXXXXXXXXSAARLGLEVDVELPLLVPPRLDDMGAESETPVFRSRLVDGVPVLKYGGGGRGKPKPKVLWVTPDLSEIFYTQAGRTKNSKKSSHMPLAGLCISRGRRDCPDLLRAPTDDRCFALVQADCLAGDDQKGGGDREKNGDEGNDTDGGGGSPA-------------------PGRRKWGIGGTLPADLAHGKRWRGGADAGWMGVATAGRLSASSTPGGVAAAAATT--------GTAANRRANAGARERMGLETASTEECTALVDEINELVRRAGLKHGAGGSSSRGRDLFDEWVMQSAEARRGADADAGAEADVA 3057
KL+EL+E+RDRA+HLCLQ YRCKL+NTEGSLRAEERLAS+LK QLREANAAGEATRK GEQ+ KRIK+LE+ + LREQVA LALSE +AAE+ AEA+ AER+LR AVE IK D P R R + GD +R V P R ++ + G + L + R SV +A +A P + K G G+ +V V PARKQL P+ SEIPGRV +SYPR +RVTFTP TT PAT + VG + EEA G E ++P +VAG + +D L R EE A Q+SP +PS ++ S F + RQP C SE A P D HP S E+ P+D V LG+A GTE + TE RE AE + P G EP K S A G+E E P L R D A FR RLV+GVPVLKYGG RGKPK K+LWVTPDLSEIFYTQAGRTKNSKKSSHMPLAGLC S+GR D P+ R+ TDDRCFALVQA G D +E GGG PGRR+WGIGGTLPA+L HG+RWRGG+ + RL AS+T + G RERM LET + EECTALVDEINELVRRAGL+ G GGSS+RGRDLFDEWV +SA R D GA + A
Sbjct: 6 KLLELIEDRDRALHLCLQSSTIAPWERHGTRLHISLRAVSSTETAFSLVDVLTSSTRFADLLTQYRCKLRNTEGSLRAEERLASELKGQLREANAAGEATRK---------------------------------------------------------------------------GEQSGSKRIKKLELVVSSLREQVAALALSEHRAAEQAGRAEARAXXXXXAERDLRAAVEGIKTDFEALVHELRLREKQIRQMEAKNATLAVRSVPTSPTPRGHTRSRSPAETGNAEGDNQR--VSPRTRGMTPESKGSVRVKELHKSRNSSVDSSSARAKEATSLNTRALARPQKRGKRGEEACIPPGKNGRRGNSPHAAAVPSVVYPARKQLAPRKSEIPGRVMAMSYPRGVNRVTFTPSNTHVTTPPATVXXXXXARETVRPVGPIPEEASCXXXXXXXXXXXXXGGEVCSAPA--EVAGTVTDDGRRPEAQLDRSGEEKSGASQRSPP----SPSQDCAVPPQSPFPRHCRQPACTCSETAAPPASDHHPIVGMSKTTEVILADLGGAAPEDGVVGLGSA-GGTELL-----------------TTDTETREGAENASAEGVSPPVAQTASTGRFSGDDDEPGEEKSTPHGGKIEDAKSEAGHGVEASSEQPGLGKGRRDPDAA-----AFRPRLVEGVPVLKYGG--RGKPKAKMLWVTPDLSEIFYTQAGRTKNSKKSSHMPLAGLCASKGRGDHPEPARSTTDDRCFALVQAADSLGHDNPHHKVKE-----------GGGXXXXXXXXXXXXXXXXXXXXXXPGRRRWGIGGTLPANLVHGRRWRGGSGSAATTTGPTERLGASATSASGSXXXXXXXXXXXXXXGAVLQHHPAGATRERMVLETTNAEECTALVDEINELVRRAGLQRGGGGSSARGRDLFDEWV-RSAVGRDAQAVDPGANGEAA 856 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig493.12890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig493.12890.1 >prot_L-elsbetiae_contig493.12890.1 ID=prot_L-elsbetiae_contig493.12890.1|Name=mRNA_L-elsbetiae_contig493.12890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1020bp MAMVSSRLQHDIDRRVRAAYSLDLDRGLCGDTHRSSSIPAALCHHGRQEYback to top mRNA from alignment at L-elsbetiae_contig493:23154..29046+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig493.12890.1 ID=mRNA_L-elsbetiae_contig493.12890.1|Name=mRNA_L-elsbetiae_contig493.12890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5893bp|location=Sequence derived from alignment at L-elsbetiae_contig493:23154..29046+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig493:23154..29046+ >mRNA_L-elsbetiae_contig493.12890.1 ID=mRNA_L-elsbetiae_contig493.12890.1|Name=mRNA_L-elsbetiae_contig493.12890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6120bp|location=Sequence derived from alignment at L-elsbetiae_contig493:23154..29046+ (Laminarionema elsbetiae ELsaHSoW15)back to top |