mRNA_L-elsbetiae_contig493.12889.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig493.12889.1
Unique NamemRNA_L-elsbetiae_contig493.12889.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig493.12889.1 vs. uniprot
Match: D7FY36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY36_ECTSI)

HSP 1 Score: 337 bits (865), Expect = 5.330e-110
Identity = 191/330 (57.88%), Postives = 221/330 (66.97%), Query Frame = 1 
Query:  430 SVERLVMSVASSFKQEITACLPLHVLQFALEFVNLSENGVLCAVSKEFREAAEGDALWREAYKKRFPKKEAEGG-NALQGGPDASPDTSADASAGDDCAGGNGSD----NEAAAASPVASVTELSVEVVKFS-FKYLYKERIQDPHVGDHVEVVWKGKFRLESFEVYDGTAWWLAEVVDKGERPGFYQVHYPGWEDKWDEWVPRDRLRWGNERLAAALEGIAPKKGDSVEMWCQGLHVPGAWLEAVVHRVEKERLYLGEVLTSGHFWVDAEHVRLIKQSRAGEDGEEDQQEADGDVSA--HRTSSMLLQALSDAGFTGSTNSACC-CSVM 1392
            +VE LV++VA+ FKQE+TA LPLHVLQ                   +FREAAEGD LWREAY +RFP  ++E   +A QGGPDA               GG G       EA A  P AS    S    K   FK  YK R+ DPHVGD V+V WKGKFRLES EVYDGTAWWLA VVDKGE+PG+Y+VHYPGWE KWDEWV RDRLRWGNE LAA L+GI  + GD+VE+WC+GLHVPGAWLEAVV+ VEKER+YLGEVLTSGHFW   EHVRLI++    +DG E +    G  SA   R++S+LLQ L+DAGFT  T S CC CSV 
Sbjct:   47 TVENLVVAVAAKFKQEVTASLPLHVLQ-------------------DFREAAEGDGLWREAYDERFPVLQSETSESAGQGGPDA---------------GGGGCGPVDCREATATKPTASGRNSSTGDEKGDGFKGRYKRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGYYKVHYPGWEPKWDEWVVRDRLRWGNEHLAAPLKGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEVEKERVYLGEVLTSGHFWARTEHVRLIQKGPVDDDGGEFRL---GYTSACRRRSNSVLLQCLTDAGFT--TESTCCYCSVQ 337
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BLAST of mRNA_L-elsbetiae_contig493.12889.1 vs. uniprot
Match: A0A835ZI68_9STRA (Tudor-knot domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI68_9STRA)

HSP 1 Score: 196 bits (497), Expect = 2.740e-56
Identity = 105/253 (41.50%), Postives = 139/253 (54.94%), Query Frame = 1 
Query:  517 LEFVNLSENGVLCAVSKEFREAAEGDALWREAYKKRFPKKEAEGGNALQGGPDASPDTSADASAGDDCAGGNGSDNEAAAASPVASVTELSVEVVKFSFKYLYKERIQDPHVGDHVEVVWKGKFRLESFEVYDGTAWWLAEVVDKGERPGFYQVHYPGWEDKWDEWVPRDRLRWGNERLAAALEGIAPKKGDSVEMWCQGLHVPGAWLEAVVHRVEKERLYLGEVLTSGHFWVDAEHVRLIKQSRAGEDGEED 1275
            + F++L E G L  +SK +R+ +E D LWRE YK RF                                    SD+  AA S  A    LS        K  +  R+  P VGD VEV W+GKFRLES EV+ G AWWLA+VV + +    Y+VHYPGWE +WDEWV R+RLRWGN+  AA L G   + GD+VE+WC G+HVPGAWLE  V  +  +R YLG++L +G F +     RL++++     GEE+
Sbjct:    1 MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKI----------------------------------SDSLLAAGSDAAVTPPLSC-------KEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAELMARGEEE 212
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BLAST of mRNA_L-elsbetiae_contig493.12889.1 vs. uniprot
Match: W7T606_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T606_9STRA)

HSP 1 Score: 194 bits (492), Expect = 3.380e-53
Identity = 126/351 (35.90%), Postives = 182/351 (51.85%), Query Frame = 1 
Query:  232 GAAAAWTIALCALWGCRDAHDLEASLDFMGKVV----LGLAPPEFGQAFSEF-----ENAIQTKKQELGMKVFNPSVERLVMSV-ASSFKQEITACLPLHVLQFALEFVNLSENGVLCAVSKEFREAAEGDALWREAYKKRFPKKEAEGGNALQGGPDASPDTSADASAGDDCAGGNGSDNEAAAASPVASVTELSVEVVKFSFKYLYKERIQDPHVGDHVEVVWKGKFRLESFEVYDGTAWWLAEVVDKGERPGFYQVHYPGWEDKWDEWVPRDRLRWGNERLAAALEGIAPKKGDSVEMWCQGLHVPGAWLEAVVHRVEKERLYLGEVLTSGHFWVDAEHVRLIKQSRA 1254
            G  A WT A+  L+  +D   +   L  +  ++    LG A     Q  S+F     E A+  KK++    +F P V RL + V A  F ++    LP  VL +   F+++SE G+  +V ++++E  +  A+W+  Y KRF        + L    DAS                                T + + +   S++ L++ R+ DPHVGD VEV WKGKFRLES ++Y G AWW A VV+KGE    Y++HYPGW+ +WDEWV RDRLRW  E+     + I P   D VE+WC G +VPGAWLEA V +V+ +   +G VL+SG  WV+ E VR+  +  A
Sbjct:  102 GLGAGWTRAIVDLYNAQDPEQMIRCLQEIQSLLRTQKLGKAGVAKEQQQSKFCKKDLEAALNEKKKK-NPNLFIPDVRRLSLEVMAEFFDKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRF--------HFLHSPDDAS--------------------------------TGIGLPL---SYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQ--DLNKRIMPN--DDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGA 404
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BLAST of mRNA_L-elsbetiae_contig493.12889.1 vs. uniprot
Match: A0A4D9D060_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D060_9STRA)

HSP 1 Score: 184 bits (466), Expect = 5.540e-51
Identity = 108/282 (38.30%), Postives = 154/282 (54.61%), Query Frame = 1 
Query:  370 EFENAIQTKKQELGMKVFNPSVERLVMSV-ASSFKQEITACLPLHVLQFALEFVNLSENGVLCAVSKEFREAAEGDALWREAYKKRFPKKEAEGGNALQGGPDASPDTSADASAGDDCAGGNGSDNEAAAASPVASVTELSVEVVKFSFKYLYKERIQDPHVGDHVEVVWKGKFRLESFEVYDGTAWWLAEVVDKGERPGFYQVHYPGWEDKWDEWVPRDRLRWGNERLAAALEGIAPKKGDSVEMWCQGLHVPGAWLEAVVHRVEKERLYLGEVLTSGHFW 1212
            + E A+  KK++  + +F P V RL + V A  F ++    LP  VL +   F+++SE G+  +V ++++E  +  A+W+  Y KRF        + L    DAS                                T + + V   S+  L++ R+ DP+VGD VEV WKGKFRLES ++Y G AWW A VV+KGE    Y++HYPGW+ +WDEWVPRDRLRW  E+     + I P   D VE+WC G +VPGAWLEA V +V+ +   +G VL+SG  W
Sbjct:   35 DLEAALNEKKKKNSI-LFIPDVRRLSLEVMAEFFDKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSGAVWKPLYIKRF--------HFLHSPDDAS--------------------------------TGIGLPV---SYHALFRARLLDPYVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTVEQ--DLNKRIMPN--DDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALW 268
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BLAST of mRNA_L-elsbetiae_contig493.12889.1 vs. uniprot
Match: A0A835ZFT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT0_9STRA)

HSP 1 Score: 182 bits (461), Expect = 2.020e-50
Identity = 107/279 (38.35%), Postives = 141/279 (50.54%), Query Frame = 1 
Query:  418 VFNPSVERLVMSVASSF--KQEITACLPLHVLQFALEFVNLSENG-VLCAVSKEFREAAEGDALWREAYKKRFPKKEAEGGNALQGGPDASPDTSADASAGDDCAGGNGSDNEAAAASPVASVTELSVEVVKFSFKYLYKERIQDPHVGDHVEVVWKGKFRLESFEVYDGTAWWLAEVVDKGERPGFYQVHYPGWEDKWDEWVPRDRLRWGNERLAAALEGIAPKKGDSVEMWCQGLHVPGAWLEAVVHRVEKERLYLGEVLTSGHFWVDAEHVRLIKQ 1245
            +F   VE  V  + S      E  A LP  +     +F+ L E G  +C VS+++R+  E + LWRE Y  RF     +   A                                         EL+    K   K L+  R+  P VGD VEV W+GKFRLES E+Y+G AWWLAE+V+       Y+VHYPGWE +WDE+VPR+RLRWGN+R AA L       GD VE+WC G +VPGAWLE  V  +  ER++LG+V+  G F V  E  RL+ +
Sbjct:    6 LFVYKVEEAVAVITSHLLRSSEPAASLPPGLFLDIAQFLTLEERGKAVCCVSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATH-----------------------------------TEAQELAQPGPKV--KDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEERCRLVSK 247
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BLAST of mRNA_L-elsbetiae_contig493.12889.1 vs. uniprot
Match: A0A7S4A403_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A403_9STRA)

HSP 1 Score: 172 bits (437), Expect = 4.460e-46
Identity = 100/273 (36.63%), Postives = 137/273 (50.18%), Query Frame = 1 
Query:  478 ITACLPLHVLQFALEFVNLSENGVLCAVSKEFREAAEGDALWREAYKKRFPKKEAEGGNALQGGPDASPDTSADASAGDDCAGGNGSDNEAAAASPVASVTELSVEVVKFSFKYLYKERIQDPHVGDHVEVVWKGKFRLESFEVYDGTAWWLAEVVDK------GERPG----------FYQVHYPGWEDKWDEWVPRDRLRWGNERLAAALEGIAPKKGDSVEMWCQGLHVPGAWLEAVVHRVEKERLYLGEVLTSGHFWVDAEHVRLIKQS 1248
            ++  LP   +   L F++++ +  L  VS+++   +  DALWR+ Y  RF       G + +G  + S D   D                                     +K  YK+R++DPHVGD VEV W+GKFRLES E+Y GTAWW+A VVDK         PG          +Y+V +PGWE +WDEWV RDRLRW   R     E  A K  D VE+WC   +VPGAWLEA V ++  + + +G VL++G  WVD   VR  + S
Sbjct:   93 VSNTLPRDTMLLCLSFLDVTAHTTLSTVSRDWLSLSSEDALWRDHYLNRFS------GGSDEGDGETSADEYED-------------------------------------YKQEYKQRLEDPHVGDDVEVAWRGKFRLESLEIYRGTAWWVAVVVDKVALDAASGSPGRGRKIHAAKAWYKVTFPGWEGRWDEWVSRDRLRW---RAKNTQEADALKPRDFVEVWCGSQNVPGAWLEASVQKIRGDAVEVGRVLSTGSLWVDRSRVRRARSS 319
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BLAST of mRNA_L-elsbetiae_contig493.12889.1 vs. uniprot
Match: D8LI95_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI95_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 8.250e-37
Identity = 89/256 (34.77%), Postives = 131/256 (51.17%), Query Frame = 1 
Query:  484 ACLPLHVLQFALEFVNLSENGVLCAVSKEFREAAEGDALWREAYKKRFPKKEA-EGGNALQGGPDASPDTSADASAGDDCAGGNGSDNEAAAASPVASVTELSVEVVKFSFKYLYKERIQDPHVGDHVEVVWKGKFRLESFEVYDGTAWWLAEVVDKGERPGF-YQVHYPGWEDKWDEWVPRDRLRWGNERLAAALEGIAPKKGDSVEMWCQGLHVPGAWLEAVVHRVEKERLYLGEVLTSGH--FWVDAEHVRLI 1239
            A LP  +L  ++E +N+ + G +C V+K++R AAE DA+WR  + +RF +    + G A  G                                                 K L++ R++DP VGD VEV W+G+FRLES +V+ G +WW A VV K +  GF Y++HYPGW+  WDEWV RDRLRW    +  +      +  + VE+WC G HV GAWL+A V +++++++ L  VL S     WV    VR +
Sbjct:   27 AGLPRELLARSMELLNMVDLGQVCCVNKDWRNAAEEDAVWRFWWARRFREDPPPQRGRARAG-----------------------------------------------HLKQLHRYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKMD--GFKYKIHYPGWDSNWDEWVVRDRLRWP---VDPSYLSTTFRVREVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTVWVPRSKVRRV 230
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BLAST of mRNA_L-elsbetiae_contig493.12889.1 vs. uniprot
Match: A0A7S2XXB7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXB7_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.240e-22
Identity = 43/94 (45.74%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:  970 YQVHYPGWEDKWDEWVPRDRLRWGNERLAAALEGIAPKKGDSVEMWCQGLHVPGAWLEAVVHRVEKERLYLGEVLTSGHFWVDAEHVRLIKQSR 1251
            Y++HYPGW+ +WDEWVPR+RLRW        +E    +  D VE+WC G +VPGAWLEA V  ++ E++++G++L+SG  WV    VRL  + +
Sbjct:    1 YKIHYPGWDTRWDEWVPRNRLRWAMHHNP--MENF--QVNDRVEVWCTGSNVPGAWLEAQVKAIKGEQIFVGKMLSSGPLWVAKTRVRLCPKPK 90
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BLAST of mRNA_L-elsbetiae_contig493.12889.1 vs. uniprot
Match: D7G101_ECTSI (Tudor-knot domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G101_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.990e-19
Identity = 52/151 (34.44%), Postives = 71/151 (47.02%), Query Frame = 1 
Query:  814 KYLYKERIQDPHVGDHVEVVWKGKFRLESFEVYDGTAWWLAEVV---------------DKGE---------------RPGFYQVHYPGWEDKWDEWVPRDRLRWGNERLAAALEGIAPKKGDSVE------MWCQGLHVPGAWLEAVVHR 1158
            ++ ++ R+  P VGDHVEV WKGKFRL+   V+ G +WW A+VV               + GE               RP  + VHY  W  +WDEW+   R+RW  +    A    +   G  +E      +WC G    GAWLEA VH+
Sbjct:   57 RFAFRSRLACPVVGDHVEVAWKGKFRLDDCMVFVGLSWWDAKVVAVELGESLPCTTPDDEDGEDGRVDRRGATCMGERRPKRFLVHYRSWSRRWDEWLEPSRVRWARKMPTEACGQTSASAGPELEVDQEAELWCHGGSGGGAWLEARVHK 207
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BLAST of mRNA_L-elsbetiae_contig493.12889.1 vs. uniprot
Match: A0A6H5JY90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY90_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 7.480e-7
Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:  769 ASVTELSVEVVKFSFKYLYKERIQDPHVGDHVEVVWKGKFRLESFEVYDGTAWWLAEVVDKGER---------PGFYQVH 981
            A+ +E    +V+F+F+     R+  P +GDHVEV WKGKFRL+   V+ G +WW A+V   G R         PG  +VH
Sbjct:   31 AATSEGPSGMVRFAFR----SRLACPVLGDHVEVAWKGKFRLDDCMVFVGLSWWDAKVRHVGSRCCTVVSCAAPGETRVH 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig493.12889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FY36_ECTSI5.330e-11057.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZI68_9STRA2.740e-5641.50Tudor-knot domain-containing protein n=1 Tax=Tribo... [more]
W7T606_9STRA3.380e-5335.90F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A4D9D060_9STRA5.540e-5138.30F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A835ZFT0_9STRA2.020e-5038.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4A403_9STRA4.460e-4636.63Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
D8LI95_ECTSI8.250e-3734.77F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2XXB7_9STRA3.240e-2245.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7G101_ECTSI1.990e-1934.44Tudor-knot domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JY90_9PHAE7.480e-740.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig493contigL-elsbetiae_contig493:3525..7933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.7
Seed ortholog evalue2.1e-90
Seed eggNOG ortholog2880.D7FY36
Hectar predicted targeting categoryother localisation
EggNOG OGs2D67V@1,2T127@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionF-box and Chromo domain-like protein
Ec32 orthologEc-27_006970.1
Exons7
Model size1395
Cds size1395
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816491.064236-CDS-L-elsbetiae_contig493:3524..37311622816491.064236-CDS-L-elsbetiae_contig493:3524..3731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig493 3525..3731 -
1691683597.7012136-CDS-L-elsbetiae_contig493:3524..37311691683597.7012136-CDS-L-elsbetiae_contig493:3524..3731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig493 3525..3731 -
1622816491.0767393-CDS-L-elsbetiae_contig493:4245..44581622816491.0767393-CDS-L-elsbetiae_contig493:4245..4458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig493 4246..4458 -
1691683597.7181203-CDS-L-elsbetiae_contig493:4245..44581691683597.7181203-CDS-L-elsbetiae_contig493:4245..4458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig493 4246..4458 -
1622816491.0877554-CDS-L-elsbetiae_contig493:5052..51781622816491.0877554-CDS-L-elsbetiae_contig493:5052..5178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig493 5053..5178 -
1691683597.72922-CDS-L-elsbetiae_contig493:5052..51781691683597.72922-CDS-L-elsbetiae_contig493:5052..5178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig493 5053..5178 -
1622816491.09783-CDS-L-elsbetiae_contig493:5490..58291622816491.09783-CDS-L-elsbetiae_contig493:5490..5829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig493 5491..5829 -
1691683597.7407951-CDS-L-elsbetiae_contig493:5490..58291691683597.7407951-CDS-L-elsbetiae_contig493:5490..5829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig493 5491..5829 -
1622816491.1081216-CDS-L-elsbetiae_contig493:6652..67291622816491.1081216-CDS-L-elsbetiae_contig493:6652..6729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig493 6653..6729 -
1691683597.7523935-CDS-L-elsbetiae_contig493:6652..67291691683597.7523935-CDS-L-elsbetiae_contig493:6652..6729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig493 6653..6729 -
1622816491.1187387-CDS-L-elsbetiae_contig493:7368..75571622816491.1187387-CDS-L-elsbetiae_contig493:7368..7557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig493 7369..7557 -
1691683597.7616005-CDS-L-elsbetiae_contig493:7368..75571691683597.7616005-CDS-L-elsbetiae_contig493:7368..7557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig493 7369..7557 -
1622816491.133915-CDS-L-elsbetiae_contig493:7689..79331622816491.133915-CDS-L-elsbetiae_contig493:7689..7933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig493 7690..7933 -
1691683597.7714257-CDS-L-elsbetiae_contig493:7689..79331691683597.7714257-CDS-L-elsbetiae_contig493:7689..7933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig493 7690..7933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig493.12889.1prot_L-elsbetiae_contig493.12889.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig493 3525..7933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig493.12889.1

>prot_L-elsbetiae_contig493.12889.1 ID=prot_L-elsbetiae_contig493.12889.1|Name=mRNA_L-elsbetiae_contig493.12889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=465bp
FSPSTESEDIQHAAPGSMPVEWSKRSELLEWKNPWYSHGPGTPDGRSDPS
IFCSESAPRTASASCDSESVAAIAGAAGAAAAWTIALCALWGCRDAHDLE
ASLDFMGKVVLGLAPPEFGQAFSEFENAIQTKKQELGMKVFNPSVERLVM
SVASSFKQEITACLPLHVLQFALEFVNLSENGVLCAVSKEFREAAEGDAL
WREAYKKRFPKKEAEGGNALQGGPDASPDTSADASAGDDCAGGNGSDNEA
AAASPVASVTELSVEVVKFSFKYLYKERIQDPHVGDHVEVVWKGKFRLES
FEVYDGTAWWLAEVVDKGERPGFYQVHYPGWEDKWDEWVPRDRLRWGNER
LAAALEGIAPKKGDSVEMWCQGLHVPGAWLEAVVHRVEKERLYLGEVLTS
GHFWVDAEHVRLIKQSRAGEDGEEDQQEADGDVSAHRTSSMLLQALSDAG
FTGSTNSACCCSVM*
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mRNA from alignment at L-elsbetiae_contig493:3525..7933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig493.12889.1 ID=mRNA_L-elsbetiae_contig493.12889.1|Name=mRNA_L-elsbetiae_contig493.12889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4409bp|location=Sequence derived from alignment at L-elsbetiae_contig493:3525..7933- (Laminarionema elsbetiae ELsaHSoW15)
TTCTCGCCATCGACAGAAAGCGAAGATATCCAACATGCGGCGCCCGGCAG
TATGCCCGTCGAGTGGAGCAAGCGCAGCGAGCTTCTGGAGTGGAAAAACC
CCTGGTACTCGCACGGGCCAGGGACGCCCGACGGCCGTAGTGATCCGTCG
ATTTTCTGCTCGGAATCAGCTCCGAGAACAGCATCAGCTTCTTGTGATTC
TGAATCTGTTGCTGCTATTGCTGGTGCTGCTGGTGCTGCTGCTGGTGCTG
CTGCTGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GGTGCTGCTGCTGGTGCTGGTGCTGTTGAATGTGCCGATCCTGAACCAAG
ATGCAACGGCAAGTGTTCTGGCCAAGCCTGGACAATCGCTCTGTGCGCAC
TTTGGGGGTGTCGAGATGCACACGATCTGGAGGCCTCTCTCGACTTCATG
GGTAAGGTTGTCCTCGGCCTTGCGCCTCCTGAGTTCGGCCAAGCCTTTAG
CGAGTTTGAAAATGCGATTCAGACCAAGAAGCAGGAATTGGGCATGAAAG
TGTTCAACCCCTCAGGTGAGGACTTGGTTGCGACATTGTAGCCACACCTA
TGCTTGCTATGGGTGAAACCTTCTCATTTTCGCCACTCCCAAACTGCAAA
CTCTCGATATCTGGTCGTTCCAGAACACTGTGGGTGCCATAAATACCGTT
GGTGTACACTGTCGGGATACATGTACTGCATGTACGATCGCAATAGTTTC
GACGTCAACAACTTTCGACCGACAATCTCGCTACCAAACCCATATGCGCC
GCACGGATCATGGTATGATTGTGACACAGACAGGTACCATATTTTACTAC
TGGCTTGCCTTATTTGGTCAATGCATGGACCATAACCTCGGAAACAGATA
GGCCGCAAAATCACGTGCCTGTAAGTTTGCACTTCAAAGTACGATGTATT
TTTCCATAAACGACTCGTCGTGATCATACTTTGTTGAATCGATCCTTCCG
CCCTCGCGTATTGTCTAGATTGGCCTAAATCCAAACGCAAGTACCATGTC
GAAATATTTCACACAGAAAAGCGTACCGTCACTATATGGTTTAACCACTT
GGAGACCTCAAAGAAAAACAGGGCACAATTTACAGGTGTAGTGTGCATTC
TTGAGCTGATCGATGCGGCCGTTATTGTGTTGTCCTCTTACTCGTTGGTG
GCAGTCGAAAGGCTAGTGATGTCAGTGGCGTCCAGCTTTAAGCAGGAGAT
CACAGCATGCCTGCCTCTACACGTGCTGCAGGTTTGTTTTATAGAGCGCG
CGCTGTGTGTTTTGATGTGTGTGGCAGACCACCAAGTTCCAGCACTTCTA
TGGAGAAGCCTTACTGCATCTGGCTGTGGTAGGGAATCGCGTGGTTCTTG
CTGATGTCAATTCTGAGCAACTCCACATACACGGCGCACGTAAATGTCGT
ATTGGATTCCTTGCTGGTAGGCCGCTTCCGACACCCTTGTCCACCAAGCA
GGCCTCCATATTGGCGCGTCCATTAGGAGCCGGCTTTCTCCGCGTGCCGT
GTGCGCAGGCCGAAGCTAAAATAGGATCACTCAAGCGTTGTGCGTGCTGA
CGAGCCTCTTCTTATTTTCTGAACTTTTGCATACAGTACGATAGTGTTGG
ATATTAACCCCCTTAGGGCCACAAGGCTTATGGAGCCACTTTTTGGCGCC
AAGTGACACGCCAAGCGTTTCGACCCCCTTTCACCACGTGACCTCAATTC
CTTCTCTGGAATCCCTATTAAATGGCCCCGGATGGTTATGGGGCCATTCA
ATAGGGATTCTAGAGTTGGAACCCGTCACAGGGAACTGTGAGTAAGATCC
AACCACAGCTCTGGAAAAATTAAAAACGTGTTGGCGTCATCAGTGGATTA
AAATGTCTCAGAATCAGCTCCCATGCTGTGTGTTGCACAATCAGGTGCCA
TTGCTCTCAGCTCCCATGCTGTGTGTTGCACAATCAGGTGCCATTGCTCT
AGTTAGAGGTAGATGCCTTGACTAAGCGGGCCGATGCTAAGGGCAGTAAT
CCCATCCCCCGCCGCCACCGCCGCCGTGTGCGCTCGATCGTGATGTTCAT
GCAGTTCGCCCTAGAGTTCGTCAACTTGTCGGAGAACGGCGTGCTATGTG
CCGTGAGCAAGGAGTTCCGCGAAGCCGCAGAGGGGGACGCCCTCTGGCGC
GAAGCGTACAAAAAACGATTTCCCAAAAAGGAAGCAGAGGGCGGCAATGC
TTTGCAAGGGGGTCCCGATGCTAGTCCCGATACTAGTGCCGATGCCAGTG
CCGGTGATGATTGTGCTGGTGGAAATGGTTCCGATAATGAAGCGGCCGCT
GCCAGTCCGGTCGCAAGCGTCACAGAACTGTCTGTCGAGGTGGTGAAATT
TAGCTTCAAGTACCTCTACAAAGAGCGCATTCAGGACCCCCACGTGAGTG
CTGCTTTATAGTGTAGCATATGAATGGAGGCAGGGATCGTTCGGCACCCG
ACACGATTGAACTACTGCTTTGAAGTGAAAACTCCGTGCAATATTCCGAA
GGTGTGACGTTCAGTAAGTAGCCTACCCCAAGCTGTCTCACTGTCTCAAC
CACTTGACCCTGTCAACCCCGAACGCTTCAACACCGAGTCGTGGCTTCCA
CTGCAGCTACACCCAAAAGAAACGTATCCAGCCGTAAACGGTGGCAATCT
CACTGGTGTGCGTTGGCCGATATGCACCGGTTCGTATCTGATCTCCCGTG
ACAAGGTGGGTGACCACGTGGAAGTGGTGTGGAAGGGAAAGTTCCGCCTG
GAGTCTTTTGAGGTATACGACGGCACGGCCTGGTGGCTTGCCGAGGTCGT
CGACAAGGGCGAACGCCCGGGGTTCTACCAGGTACGGTCAGTGTTTTTTT
CAGCGTCGTCGAGCGTGCCCGGTTTTGCGACCACGGGCGGGGCCCCACAG
ATGTTTTGGACCAGAGGTAGCTAGTGTGAGAAACAACAACGTCAACAAGT
CAGTCGCTGCCCTACCGGCCGGCACCTTTCGAAGGTGGTTTTGCTCGTCA
TCCTGACGGGGCGACAGGTGGTAGACGTGAAGAGCCCACTTTCCCGAAGT
CTACGAATCATGGAGGCGTGCTATTGAAGCAATGCGAGCGGAGACGTAGA
GAGAACGGACCCGTGTTTTGGAAAGCCTACACCCTCGACTGGCGCCTGAT
GTCCTTGGAAATCGCCCCATTTGTTTTTGTCCTGTTAGACTACTTGCAGA
AGAGTCAACTCGGTGAAGATTGTCTCGCTCCGCCAATAAGTAGCAGTAGA
TACACAGTCTCACAAACTCATCGGAAAAAGTAAAGGGACCGCGAGCTAAA
CAATTAGGAAACCATGAACAATACACACACACACCCCGCGACAGCTCTGG
GTAATCTCAAGAGCACCTCCACCCACCTGCCCGCTAAAATGATTATTTCG
CTCTTGCTTTATCATGGCAAACAAGGTTCACTATCCAGGTTGGGAGGACA
AGTGGGACGAGTGGGTGCCTCGCGACCGCCTGCGGTGGGGGAATGAGCGC
CTCGCGGCAGCCCTGGAGGGAATCGCCCCAAAGAAAGGCGACTCCGTGGA
GATGTGGTGCCAAGGCTTGCACGTGCCTGGTGCTTGGCTGGAGGCGGTGG
TGCACAGGGTGGAGAAGGAGCGGCTTTATCTTGGGGAGGTGAAGCAGAGC
ACCATTCTTGTTTTGACTTGGCTGATAGCTCAACGCCTGTAGGAAAGGCA
GTGGAGTGCCATCGCGAATACTCTCACACCTTCTCACTCTTTTATTTCCA
CCTGAGAGGAACTGGCTTGTGAGTGCGGAGCGACAAACCTTGTGCACTGC
TGGATAAAGATGAAGATTAGCAACGAATTCAGCTCACCGCCATCAACACA
CAATACCGCGCCGACGCCACGCTACTCGGCCGCAAATACCCCAGCTGTGC
GTGGCAACTACGCGCCGCACGCACCTCGCTTCCTGCCCAACGAGCTGGAG
GCGTTCTTGGTTTCATATCGATTTCATCTCGATTTCATTTCATACTTTCA
TCGTTCGGGGTATACCCCATGGAGATCGTTCGGGATAAACCCCATGGACG
TTCCTCCTCTCTCTCGACCTTCTTTCTGCCGCCTCTCTGACTGCCGAGCG
ACTGAACTTCGCTGGTCCCTTTCTACCTCCTCGCTGCTTGGGACCGACGC
AGGTGTTGACATCCGGTCACTTCTGGGTTGACGCGGAGCACGTGCGTCTC
ATCAAGCAGAGCCGGGCTGGCGAAGACGGCGAAGAGGACCAACAGGAGGC
CGACGGCGACGTATCGGCACACCGAACAAGCAGCATGTTGCTGCAGGCTC
TGAGCGATGCCGGCTTTACTGGCAGTACCAACAGCGCCTGCTGCTGCTCA
GTCATGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig493:3525..7933-

>mRNA_L-elsbetiae_contig493.12889.1 ID=mRNA_L-elsbetiae_contig493.12889.1|Name=mRNA_L-elsbetiae_contig493.12889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2790bp|location=Sequence derived from alignment at L-elsbetiae_contig493:3525..7933- (Laminarionema elsbetiae ELsaHSoW15)
TTCTCGCCATCGACAGAAAGCGAAGATATCCAACATGCGGCGCCCGGCAG
TATGCCCGTCGAGTGGAGCAAGCGCAGCGAGCTTCTGGAGTGGAAAAACC
CCTGGTACTCGCACGGGCCAGGGACGCCCGACGGCCGTAGTGATCCGTCG
ATTTTCTGCTCGGAATCAGCTCCGAGAACAGCATCAGCTTCTTGTGATTC
TGAATCTGTTGCTGCTATTGCTGGTGCTGCTGGTGCTGCTGCTGTTCTCG
CCATCGACAGAAAGCGAAGATATCCAACATGCGGCGCCCGGCAGTATGCC
CGTCGAGTGGAGCAAGCGCAGCGAGCTTCTGGAGTGGAAAAACCCCTGGT
ACTCGCACGGGCCAGGGACGCCCGACGGCCGTAGTGATCCGTCGATTTTC
TGCTCGGAATCAGCTCCGAGAACAGCATCAGCTTCTTGTGATTCTGAATC
TGTTGCTGCTATTGCTGGTGCTGCTGGTGCTGCTGCTGCCTGGACAATCG
CTCTGTGCGCACTTTGGGGGTGTCGAGATGCACACGATCTGGAGGCCTCT
CTCGACTTCATGGGTAAGGTTGTCCTCGGCCTTGCGCCTCCTGAGTTCGG
CCAAGCCTTTAGCGAGTTTGAAAATGCGATTCAGACCAAGAAGCAGGAAT
TGGGCATGAAAGTGTTCAACCCCTCAGCCTGGACAATCGCTCTGTGCGCA
CTTTGGGGGTGTCGAGATGCACACGATCTGGAGGCCTCTCTCGACTTCAT
GGGTAAGGTTGTCCTCGGCCTTGCGCCTCCTGAGTTCGGCCAAGCCTTTA
GCGAGTTTGAAAATGCGATTCAGACCAAGAAGCAGGAATTGGGCATGAAA
GTGTTCAACCCCTCAGTCGAAAGGCTAGTGATGTCAGTGGCGTCCAGCTT
TAAGCAGGAGATCACAGCATGCCTGCCTCTACACGTGCTGCAGTCGAAAG
GCTAGTGATGTCAGTGGCGTCCAGCTTTAAGCAGGAGATCACAGCATGCC
TGCCTCTACACGTGCTGCAGTTCGCCCTAGAGTTCGTCAACTTGTCGGAG
AACGGCGTGCTATGTGCCGTGAGCAAGGAGTTCCGCGAAGCCGCAGAGGG
GGACGCCCTCTGGCGCGAAGCGTACAAAAAACGATTTCCCAAAAAGGAAG
CAGAGGGCGGCAATGCTTTGCAAGGGGGTCCCGATGCTAGTCCCGATACT
AGTGCCGATGCCAGTGCCGGTGATGATTGTGCTGGTGGAAATGGTTCCGA
TAATGAAGCGGCCGCTGCCAGTCCGGTCGCAAGCGTCACAGAACTGTCTG
TCGAGGTGGTGAAATTTAGCTTCAAGTACCTCTACAAAGAGCGCATTCAG
GACCCCCACTTCGCCCTAGAGTTCGTCAACTTGTCGGAGAACGGCGTGCT
ATGTGCCGTGAGCAAGGAGTTCCGCGAAGCCGCAGAGGGGGACGCCCTCT
GGCGCGAAGCGTACAAAAAACGATTTCCCAAAAAGGAAGCAGAGGGCGGC
AATGCTTTGCAAGGGGGTCCCGATGCTAGTCCCGATACTAGTGCCGATGC
CAGTGCCGGTGATGATTGTGCTGGTGGAAATGGTTCCGATAATGAAGCGG
CCGCTGCCAGTCCGGTCGCAAGCGTCACAGAACTGTCTGTCGAGGTGGTG
AAATTTAGCTTCAAGTACCTCTACAAAGAGCGCATTCAGGACCCCCACGT
GGGTGACCACGTGGAAGTGGTGTGGAAGGGAAAGTTCCGCCTGGAGTCTT
TTGAGGTATACGACGGCACGGCCTGGTGGCTTGCCGAGGTCGTCGACAAG
GGCGAACGCCCGGGGTTCTACCAGGTGGGTGACCACGTGGAAGTGGTGTG
GAAGGGAAAGTTCCGCCTGGAGTCTTTTGAGGTATACGACGGCACGGCCT
GGTGGCTTGCCGAGGTCGTCGACAAGGGCGAACGCCCGGGGTTCTACCAG
GTTCACTATCCAGGTTGGGAGGACAAGTGGGACGAGTGGGTGCCTCGCGA
CCGCCTGCGGTGGGGGAATGAGCGCCTCGCGGCAGCCCTGGAGGGAATCG
CCCCAAAGAAAGGCGACTCCGTGGAGATGTGGTGCCAAGGCTTGCACGTG
CCTGGTGCTTGGCTGGAGGCGGTGGTGCACAGGGTGGAGAAGGAGCGGCT
TTATCTTGGGGAGGTTCACTATCCAGGTTGGGAGGACAAGTGGGACGAGT
GGGTGCCTCGCGACCGCCTGCGGTGGGGGAATGAGCGCCTCGCGGCAGCC
CTGGAGGGAATCGCCCCAAAGAAAGGCGACTCCGTGGAGATGTGGTGCCA
AGGCTTGCACGTGCCTGGTGCTTGGCTGGAGGCGGTGGTGCACAGGGTGG
AGAAGGAGCGGCTTTATCTTGGGGAGGTGTTGACATCCGGTCACTTCTGG
GTTGACGCGGAGCACGTGCGTCTCATCAAGCAGAGCCGGGCTGGCGAAGA
CGGCGAAGAGGACCAACAGGAGGCCGACGGCGACGTATCGGCACACCGAA
CAAGCAGCATGTTGCTGCAGGCTCTGAGCGATGCCGGCTTTACTGGCAGT
ACCAACAGCGCCTGCTGCTGCTCAGTCATGTGAGTGTTGACATCCGGTCA
CTTCTGGGTTGACGCGGAGCACGTGCGTCTCATCAAGCAGAGCCGGGCTG
GCGAAGACGGCGAAGAGGACCAACAGGAGGCCGACGGCGACGTATCGGCA
CACCGAACAAGCAGCATGTTGCTGCAGGCTCTGAGCGATGCCGGCTTTAC
TGGCAGTACCAACAGCGCCTGCTGCTGCTCAGTCATGTGA
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