mRNA_L-elsbetiae_contig4928.12887.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4928.12887.1
Unique NamemRNA_L-elsbetiae_contig4928.12887.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4928.12887.1 vs. uniprot
Match: D7FT02_ECTSI (Serine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT02_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.030e-18
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:  118 AITAKIAAKGNEIRELKKSKADKATLQPHIDALIALKTQCRDETGKAGVAPGTPASAS 291
            AITAKI AKG+EIRELKKSK DKAT+QPHIDALIALKTQ +DETGKA VAPG  A+AS
Sbjct:  581 AITAKIVAKGDEIRELKKSKPDKATIQPHIDALIALKTQYKDETGKAYVAPGATANAS 638
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BLAST of mRNA_L-elsbetiae_contig4928.12887.1 vs. uniprot
Match: A0A836CAY7_9STRA (Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.250e-7
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  115 AAITAKIAAKGNEIRELKKSKADKATLQPHIDALIALKTQCRDETGKAGVAPG 273
            A I AKIA+ G+ IR+LKK+KADKA LQP+IDAL+ LK Q ++ TG    APG
Sbjct:  589 AEIAAKIASTGDAIRDLKKAKADKAQLQPYIDALLDLKRQYKEATGADYAAPG 641
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4928.12887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT02_ECTSI2.030e-1882.76Serine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A836CAY7_9STRA1.250e-760.38Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4928contigL-elsbetiae_contig4928:11771..13530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue2e-16
Seed eggNOG ortholog2880.D7FT02
Preferred nameEPRS
KEGG rclassRC00055,RC00523
KEGG koko:K01875,ko:K01885,ko:K14163
KEGG ReactionR03661,R03662,R05578,R08218
KEGG Pathwayko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120
KEGG ModuleM00121,M00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000166,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001525,GO:0001568,GO:0001569,GO:0001763,GO:0001817,GO:0001818,GO:0001944,GO:0002009,GO:0002181,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004818,GO:0004819,GO:0004827,GO:0004828,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006412,GO:0006417,GO:0006418,GO:0006424,GO:0006425,GO:0006433,GO:0006434,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006950,GO:0006952,GO:0006955,GO:0007275,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009069,GO:0009653,GO:0009719,GO:0009725,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010574,GO:0010605,GO:0010608,GO:0010629,GO:0010876,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016043,GO:0016070,GO:0016259,GO:0016525,GO:0016874,GO:0016875,GO:0017076,GO:0017101,GO:0017102,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0022603,GO:0022607,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0035239,GO:0035295,GO:0035613,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042221,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043434,GO:0043436,GO:0043565,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044539,GO:0045087,GO:0045765,GO:0045892,GO:0045934,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0046942,GO:0046983,GO:0048514,GO:0048519,GO:0048523,GO:0048646,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051093,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0060429,GO:0060562,GO:0061138,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097452,GO:0098619,GO:0140098,GO:0140101,GO:1901265,GO:1901342,GO:1901343,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902679,GO:1903506,GO:1903507,GO:1903670,GO:1903671,GO:1904046,GO:1990837,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000181,GO:2001141
EggNOG free text desc.glutamyl-tRNA aminoacylation
EggNOG OGsCOG0008@1,COG0172@1,KOG1147@2759,KOG2509@2759
EC6.1.1.11,6.1.1.15,6.1.1.17
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016
Exons3
Model size371
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4928.12887.1prot_L-elsbetiae_contig4928.12887.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4928 11771..13530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816490.7576458-CDS-L-elsbetiae_contig4928:11770..119141622816490.7576458-CDS-L-elsbetiae_contig4928:11770..11914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4928 11771..11914 +
1691683597.5119574-CDS-L-elsbetiae_contig4928:11770..119141691683597.5119574-CDS-L-elsbetiae_contig4928:11770..11914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4928 11771..11914 +
1622816490.769324-CDS-L-elsbetiae_contig4928:12598..127841622816490.769324-CDS-L-elsbetiae_contig4928:12598..12784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4928 12599..12784 +
1691683597.5266664-CDS-L-elsbetiae_contig4928:12598..127841691683597.5266664-CDS-L-elsbetiae_contig4928:12598..12784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4928 12599..12784 +
1622816490.7811933-CDS-L-elsbetiae_contig4928:13491..135301622816490.7811933-CDS-L-elsbetiae_contig4928:13491..13530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4928 13492..13530 +
1691683597.5380695-CDS-L-elsbetiae_contig4928:13491..135301691683597.5380695-CDS-L-elsbetiae_contig4928:13491..13530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4928 13492..13530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4928.12887.1

>prot_L-elsbetiae_contig4928.12887.1 ID=prot_L-elsbetiae_contig4928.12887.1|Name=mRNA_L-elsbetiae_contig4928.12887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
YVPVAAPASVPPAKKAAVRGAAASASAGRGGEKESPAAAAITAKIAAKGN
EIRELKKSKADKATLQPHIDALIALKTQCRDETGKAGVAPGTPASASSGG
GGGAKKRPKEVAVLAGRNAGNKK
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mRNA from alignment at L-elsbetiae_contig4928:11771..13530+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4928.12887.1 ID=mRNA_L-elsbetiae_contig4928.12887.1|Name=mRNA_L-elsbetiae_contig4928.12887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1760bp|location=Sequence derived from alignment at L-elsbetiae_contig4928:11771..13530+ (Laminarionema elsbetiae ELsaHSoW15)
TACGTCCCCGTCGCCGCTCCTGCCTCTGTGCCGCCGGCCAAGAAGGCTGC
CGTGAGAGGCGCTGCTGCTTCTGCCTCTGCCGGTCGTGGTGGTGAGAAGG
AGTCGCCAGCTGCCGCCGCAATCACCGCCAAGATCGCGGCTAAGGTGTGG
CATCCCGAAAGGCGGGGGAGCAAGTCTTGAACTTAATCGCGGAGCACAAG
AAGTTCGCGGGGGGGCGGGGGGCTGACATTGGTGACGTGACTTGTACCCA
GGTTATGTGAACGTTCGAATAATCAGTTATTTGCATCTGCTTTGGTTTCC
CTCTATATAGCTGTTGTCCCTCTCCCTGTGTGGACTACTTGTTTTGCGAT
ACAAGTGTATTGCTCCCAACACCTGACAGGCGAAAGAGAAGAAAAAGTGC
CAAAACCGAATGATAGGCATGCTTTCGGATACACTTTTAACGCCCCAAGA
TACAGATTGTGACAGGCCGGCACGATCTCGTTTTGTTATTGCACACCGCG
TGCGTTGCCGGCAGAAGCATTTGTGGGTGTTGTTAATACCCAAGGTTTCG
TTTTGAGCGCAAGTGGAAACCTCGTCCGCGTGAACAGGCGTAAATATAAT
TTGGCCGATTTGACTGTGTGGGATCACTTGATCGCTTTCTTTGGTGAGTA
TTCTCTCTGCCCCACCTTTTCTTGTTTTGTGACTGGGTAATTTTGTGTGC
CTATTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATATCTACCGA
TGTTCCCGGTGACAGCATTTTTACTTTTAACCTAAACCTCATCTCTCTTG
TCTGGTCTTGTCTTATTCTCATGCAAAGGGGAACGAGATCCGCGAGCTAA
AGAAGTCCAAGGCAGATAAGGCTACCCTCCAGCCGCACATCGATGCCCTC
ATCGCCCTCAAGACGCAGTGCAGGGACGAGACCGGCAAGGCTGGCGTGGC
TCCGGGGACCCCGGCGAGCGCCTCGTCAGGGGGGGGGGGCGGCGCCAAGA
AGCGGCCCAAAGAGGTACCATGTGTGCGTAAATCTACGCAACCGCAATTC
TGCAAGCGAACTCAAATGGACAGAGAAGTCTCTTGCGTTGTATTTCTCAT
GCGTGCACACACTATTCAACCAATGCTTTGGGTATTTTTTTGTTTGCGGT
CGCCTCTGATCGAGCTCGGCCCGTGCTAGGGAGATACAACGCCGCAACCG
GTGTAAGGCATGCCCGGCCCTTTGTTTTGTTTTGTCCCGCACAACATCTT
AGTGACTAAAGTGCGGTTTTATGGGTGGCGCTGAGTGTAGCCGTTTTTCC
CCCATCAAATCCTGTTGGTATCTGCGTGTTTCGAAGTGTTGTGTTTTTTT
CCCTTGCAAAAGGCTCGGGTCGGAAGAGAGGCGGCAAGTGCAGACCTGGC
GGACACGGCGAAAACGCGAACAAACTTCTTGCGCAATTTTCTTACGTCAC
CTGTCCTCCTATTTTGATTTTTGCAAGAAACTTCTCCTCTCGGCCGTATG
AGTGAATTTGCTGGTAGTCATGGCGAGATACACTCTCCTAGTATCGGGAA
ATGGAGGTCTCTGTTTGTTGCATACACATTGAATTTTCCTTTTTGGCCAC
GTTTGTTTATGTTGGATGCGTATTTTGTGTGACTCCGGCTGGCGCCCCTC
GTCTATTTTATCTACGGATGTAGATAGCATCTCGATCTATTGGCGCTTGC
TCTGCCTCCTTCACACATCAGGTAGCTGTTCTTGCGGGGCGCAACGCGGG
CAACAAGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4928:11771..13530+

>mRNA_L-elsbetiae_contig4928.12887.1 ID=mRNA_L-elsbetiae_contig4928.12887.1|Name=mRNA_L-elsbetiae_contig4928.12887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig4928:11771..13530+ (Laminarionema elsbetiae ELsaHSoW15)
TACGTCCCCGTCGCCGCTCCTGCCTCTGTGCCGCCGGCCAAGAAGGCTGC
CGTGAGAGGCGCTGCTGCTTCTGCCTCTGCCGGTCGTGGTGGTGAGAAGG
AGTCGCCAGCTGCCGCCGCAATCACCGCCAAGATCGCGGCTAAGTACGTC
CCCGTCGCCGCTCCTGCCTCTGTGCCGCCGGCCAAGAAGGCTGCCGTGAG
AGGCGCTGCTGCTTCTGCCTCTGCCGGTCGTGGTGGTGAGAAGGAGTCGC
CAGCTGCCGCCGCAATCACCGCCAAGATCGCGGCTAAGGGGAACGAGATC
CGCGAGCTAAAGAAGTCCAAGGCAGATAAGGCTACCCTCCAGCCGCACAT
CGATGCCCTCATCGCCCTCAAGACGCAGTGCAGGGACGAGACCGGCAAGG
CTGGCGTGGCTCCGGGGACCCCGGCGAGCGCCTCGTCAGGGGGGGGGGGC
GGCGCCAAGAAGCGGCCCAAAGAGGGGAACGAGATCCGCGAGCTAAAGAA
GTCCAAGGCAGATAAGGCTACCCTCCAGCCGCACATCGATGCCCTCATCG
CCCTCAAGACGCAGTGCAGGGACGAGACCGGCAAGGCTGGCGTGGCTCCG
GGGACCCCGGCGAGCGCCTCGTCAGGGGGGGGGGGCGGCGCCAAGAAGCG
GCCCAAAGAGGTAGCTGTTCTTGCGGGGCGCAACGCGGGCAACAAGAAGG
TAGCTGTTCTTGCGGGGCGCAACGCGGGCAACAAGAAG
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