mRNA_L-elsbetiae_contig4912.12858.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4912.12858.1
Unique NamemRNA_L-elsbetiae_contig4912.12858.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4912.12858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4912contigL-elsbetiae_contig4912:945..2763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1074
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4912.12858.1prot_L-elsbetiae_contig4912.12858.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4912 1691..2400 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816488.050607-UTR-L-elsbetiae_contig4912:944..10241622816488.050607-UTR-L-elsbetiae_contig4912:944..1024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4912 945..1024 -
1691683595.6770701-UTR-L-elsbetiae_contig4912:944..10241691683595.6770701-UTR-L-elsbetiae_contig4912:944..1024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4912 945..1024 -
1622816488.0657074-UTR-L-elsbetiae_contig4912:1656..16901622816488.0657074-UTR-L-elsbetiae_contig4912:1656..1690Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4912 1657..1690 -
1691683595.6861181-UTR-L-elsbetiae_contig4912:1656..16901691683595.6861181-UTR-L-elsbetiae_contig4912:1656..1690Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4912 1657..1690 -
1622816488.100489-UTR-L-elsbetiae_contig4912:2400..27631622816488.100489-UTR-L-elsbetiae_contig4912:2400..2763Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4912 2401..2763 -
1691683595.718231-UTR-L-elsbetiae_contig4912:2400..27631691683595.718231-UTR-L-elsbetiae_contig4912:2400..2763Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4912 2401..2763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816488.0780294-CDS-L-elsbetiae_contig4912:1690..20701622816488.0780294-CDS-L-elsbetiae_contig4912:1690..2070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4912 1691..2070 -
1691683595.6965823-CDS-L-elsbetiae_contig4912:1690..20701691683595.6965823-CDS-L-elsbetiae_contig4912:1690..2070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4912 1691..2070 -
1622816488.088442-CDS-L-elsbetiae_contig4912:2183..24001622816488.088442-CDS-L-elsbetiae_contig4912:2183..2400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4912 2184..2400 -
1691683595.7099738-CDS-L-elsbetiae_contig4912:2183..24001691683595.7099738-CDS-L-elsbetiae_contig4912:2183..2400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4912 2184..2400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4912.12858.1

>prot_L-elsbetiae_contig4912.12858.1 ID=prot_L-elsbetiae_contig4912.12858.1|Name=mRNA_L-elsbetiae_contig4912.12858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=199bp
MPSGVWSVSKTERSAHTMTAARSHRLASRGPRSESSAPDMPRRGWSTSTA
GSAHTMVAARAHRLASREPRSEKFCAGHAKEGMVSVQRMGAQNRPPTSES
DGARTTVKAEEMALSSSIIVAGCGPARNEDAPARSDGNKRTKRKDRAPPP
SRNSSRSRKRGRQAADDVVILEPEELEPATGKMADAGPRTSVAIKREP*
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mRNA from alignment at L-elsbetiae_contig4912:945..2763-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4912.12858.1 ID=mRNA_L-elsbetiae_contig4912.12858.1|Name=mRNA_L-elsbetiae_contig4912.12858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1819bp|location=Sequence derived from alignment at L-elsbetiae_contig4912:945..2763- (Laminarionema elsbetiae ELsaHSoW15)
GGGCAGGGCACGAGCTGACAAGTGGGCAGGGAGAAGCATGCCATCGGCAT
GCTTGCACGTTGGGTGCCGGAAGAAAGCTTTATATGGCGTCGTGGGAACC
AAAAGGCGAACGTTCTGCGCCGGACATGCCAAGCGGGGTTATATCAAGGT
CGGTCTCAAAAAACAGAGAGAAGTGCTCACACCATGGTTGCGGCAAGATC
CCATCGTTTGGCGTCGCGGGGACCTAGAAGCGAGAGTTCTGCGCCGGACA
TGCCAAGGAGGGGATGGTCAACCTCAACAGCAGGAAGTGCGCACACCAGG
GTTGCGACAAGAGCCCATCGTTTGGCGTCGCGGGAACCGTGAAGCGAGAG
TTCTGCGCCGGACATGCCAAGCGGGGTATGGTCGGTCTCAAAAACAGAGA
GAAGTGCTCACACCATGACTGCGGCAAGATCCCATCGTTTGGCGTCGCGG
GGACCAAGAAGCGAGAGTTCTGCGCCGGACATGCCAAGGAGGGGATGGTC
TACCTCAACAGCAGGAAGTGCTCACACCATGGTTGCGGCAAGAGCCCATC
GTTTGGCGTCGCGGGAACCAAGAAGCGAGAGTTCTGCGCTGGGCATGCCA
AGCAGGGCATGGTCAACATCTTCAACTAGAAGTGCACACACCAGGGTTGC
ACTAAACAACCGTCGTTTGGCGTCGCTGGAACCAAGAAGCGAGAGTTCTG
CGCTGGGCATGCCAAGGAAGGCATGGTGTCGGTGCAGCGCATGGGTGCGC
AAAACCGCCCACCTACATCAGAAAGCGATGGCGCCCGCACCACCGTAAAG
GCAGAGGAAATGGCCCTTTCATCTAGCATTATTGTCGCTGGTTGCGGCCC
CGCTCGGAATGAGGACGCTCCCGCACGCAGTGATGGCAACAAACGAACCA
AGCGCAAGGACCGTGCCCCGCCACCGAGCAGAAACAGCAGTCGCAGCCGC
AAGCGGGGTCGTCAAGCAGCAGACGATGTGGTCATCCTAGAACCCGAAGA
ACTTGAACCTGCGACGGGGAAGATGGCGGACGCGGGGCCGAGGACGAGCG
TCGCCATCAAGCGAGAACCTTAGGCGAGCGAGTCTGTTGCGGATATTGAA
TCTGCAGGTGCGACCACAGCAGTGCTCACACACCGAATTTAGTTTTTTGG
AGCGATGGTTTTGAACGCAGGCGTCGAAGGCACATGCTTTGTCGCTGGTG
TCGTGGTGGCTGTATTTTTTTTGTCTTCCTCCCACTTTTGGCACATTCGT
CGTCTGCCCCACTGGCCCCATCCTCCACTACGAGTAGCGAGACGACCCAA
CCGGGGTCACACAGGAGGGGGTGTTGGACCCCCTCCTATACTCTTGTAGG
GCTGTTGTTGCCATTTTGTTTTCGCAACTTTCCCCCCGAGACCAGCCGAC
AGCCACGGTGGAGATCAAGAACAGGGCACCGGGGCAAGTGGCGCGATCCC
GAAAGTCAGATTGCTACCGTATGTGGTACGAACAATTGGGAAATATGTTC
AGGTAACCTATGAGGTTATGAGATGTTTCCACGTGCGTTGCTGCGGGGGA
GTAAATCGTAGTTTTCGGATTTTTTTCTCCTCCATATCAGCTGAATGAGG
GGCGGTGCCGGACATCAATGCGCAAACGAGAGTTATATGCTACGAAAAGA
ACCGGCGTCTTGGCATTTACCCATTTCCGTCACTTGTTATTGATATGCCC
TTCCCCCCCGCCTCTTCCAAATCACTGCACCGACCGCAGGGGCATAAACT
ATTCCCGATGCCACGACGGTGGAAAATGTATTGCGAGACCCAGGATTCTG
GAGCTCGCGGTGCTGTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4912:945..2763-

>mRNA_L-elsbetiae_contig4912.12858.1 ID=mRNA_L-elsbetiae_contig4912.12858.1|Name=mRNA_L-elsbetiae_contig4912.12858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig4912:945..2763- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAAGCGGGGTATGGTCGGTCTCAAAAACAGAGAGAAGTGCTCACAC
CATGACTGCGGCAAGATCCCATCGTTTGGCGTCGCGGGGACCAAGAAGCG
AGAGTTCTGCGCCGGACATGCCAAGGAGGGGATGGTCTACCTCAACAGCA
GGAAGTGCTCACACCATGGTTGCGGCAAGAGCCCATCGTTTGGCGTCGCG
GGAACCAAGAAGCGAGAATGCCAAGCGGGGTATGGTCGGTCTCAAAAACA
GAGAGAAGTGCTCACACCATGACTGCGGCAAGATCCCATCGTTTGGCGTC
GCGGGGACCAAGAAGCGAGAGTTCTGCGCCGGACATGCCAAGGAGGGGAT
GGTCTACCTCAACAGCAGGAAGTGCTCACACCATGGTTGCGGCAAGAGCC
CATCGTTTGGCGTCGCGGGAACCAAGAAGCGAGAAGTTCTGCGCTGGGCA
TGCCAAGGAAGGCATGGTGTCGGTGCAGCGCATGGGTGCGCAAAACCGCC
CACCTACATCAGAAAGCGATGGCGCCCGCACCACCGTAAAGGCAGAGGAA
ATGGCCCTTTCATCTAGCATTATTGTCGCTGGTTGCGGCCCCGCTCGGAA
TGAGGACGCTCCCGCACGCAGTGATGGCAACAAACGAACCAAGCGCAAGG
ACCGTGCCCCGCCACCGAGCAGAAACAGCAGTCGCAGCCGCAAGCGGGGT
CGTCAAGCAGCAGACGATGTGGTCATCCTAGAACCCGAAGAACTTGAACC
TGCGACGGGGAAGATGGCGGACGCGGGGCCGAGGACGAGCGTCGCCATCA
AGCGAGAACCTTAGAGTTCTGCGCTGGGCATGCCAAGGAAGGCATGGTGT
CGGTGCAGCGCATGGGTGCGCAAAACCGCCCACCTACATCAGAAAGCGAT
GGCGCCCGCACCACCGTAAAGGCAGAGGAAATGGCCCTTTCATCTAGCAT
TATTGTCGCTGGTTGCGGCCCCGCTCGGAATGAGGACGCTCCCGCACGCA
GTGATGGCAACAAACGAACCAAGCGCAAGGACCGTGCCCCGCCACCGAGC
AGAAACAGCAGTCGCAGCCGCAAGCGGGGTCGTCAAGCAGCAGACGATGT
GGTCATCCTAGAACCCGAAGAACTTGAACCTGCGACGGGGAAGATGGCGG
ACGCGGGGCCGAGGACGAGCGTCGCCATCAAGCGAGAACCTTAG
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