mRNA_L-elsbetiae_contig4910.12856.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4910.12856.1
Unique NamemRNA_L-elsbetiae_contig4910.12856.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4910.12856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4910contigL-elsbetiae_contig4910:4275..4677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size403
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816487.9065797-CDS-L-elsbetiae_contig4910:4274..46761622816487.9065797-CDS-L-elsbetiae_contig4910:4274..4676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4910 4275..4676 +
1691683595.5870988-CDS-L-elsbetiae_contig4910:4274..46761691683595.5870988-CDS-L-elsbetiae_contig4910:4274..4676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4910 4275..4676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4910.12856.1prot_L-elsbetiae_contig4910.12856.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4910 4275..4676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4910.12856.1

>prot_L-elsbetiae_contig4910.12856.1 ID=prot_L-elsbetiae_contig4910.12856.1|Name=mRNA_L-elsbetiae_contig4910.12856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
LLPAPAPPPLLRKALLPPRAAAAAWQASSTFGTTRHGSTCRWRTRRPRRK
KKWRTSPRRWSARSAPRGGAPQKKKKPPPPPPRRSGIPDTQTSEGTLRVA
AAAAAAAAVAAAAAAGAPRARAGGAGNGVCASTP
back to top

mRNA from alignment at L-elsbetiae_contig4910:4275..4677+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4910.12856.1 ID=mRNA_L-elsbetiae_contig4910.12856.1|Name=mRNA_L-elsbetiae_contig4910.12856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=403bp|location=Sequence derived from alignment at L-elsbetiae_contig4910:4275..4677+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCTCCCGGCGCCGGCGCCGCCGCCGCTGCTTCGAAAGGCGCTCCTGCC
TCCTCGAGCGGCGGCGGCGGCATGGCAGGCGAGCAGCACCTTCGGGACCA
CACGCCACGGCAGCACCTGTCGTTGGAGGACGAGGAGGCCGAGGAGGAAG
AAGAAATGGAGAACGTCGCCGAGGCGTTGGTCGGCGAGGAGCGCTCCCCG
TGGCGGGGCTCCCCAGAAAAAGAAGAAGCCTCCGCCCCCGCCGCCCCGTC
GGAGTGGCATTCCCGATACCCAGACCTCAGAAGGTACATTGAGGGTGGCA
GCAGCAGCAGCAGCAGCAGCAGCGGTGGCGGCGGCAGCAGCGGCAGGAGC
TCCTCGCGCCAGGGCCGGCGGGGCGGGGAACGGAGTATGCGCAAGCACCC
CGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig4910:4275..4677+

>mRNA_L-elsbetiae_contig4910.12856.1 ID=mRNA_L-elsbetiae_contig4910.12856.1|Name=mRNA_L-elsbetiae_contig4910.12856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig4910:4275..4677+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCTCCCGGCGCCGGCGCCGCCGCCGCTGCTTCGAAAGGCGCTCCTGCC
TCCTCGAGCGGCGGCGGCGGCATGGCAGGCGAGCAGCACCTTCGGGACCA
CACGCCACGGCAGCACCTGTCGTTGGAGGACGAGGAGGCCGAGGAGGAAG
AAGAAATGGAGAACGTCGCCGAGGCGTTGGTCGGCGAGGAGCGCTCCCCG
TGGCGGGGCTCCCCAGAAAAAGAAGAAGCCTCCGCCCCCGCCGCCCCGTC
GGAGTGGCATTCCCGATACCCAGACCTCAGAAGGTACATTGAGGGTGGCA
GCAGCAGCAGCAGCAGCAGCAGCGGTGGCGGCGGCAGCAGCGGCAGGAGC
TCCTCGCGCCAGGGCCGGCGGGGCGGGGAACGGAGTATGCGCAAGCACCC
CGCTTCTCCCGGCGCCGGCGCCGCCGCCGCTGCTTCGAAAGGCGCTCCTG
CCTCCTCGAGCGGCGGCGGCGGCATGGCAGGCGAGCAGCACCTTCGGGAC
CACACGCCACGGCAGCACCTGTCGTTGGAGGACGAGGAGGCCGAGGAGGA
AGAAGAAATGGAGAACGTCGCCGAGGCGTTGGTCGGCGAGGAGCGCTCCC
CGTGGCGGGGCTCCCCAGAAAAAGAAGAAGCCTCCGCCCCCGCCGCCCCG
TCGGAGTGGCATTCCCGATACCCAGACCTCAGAAGGTACATTGAGGGTGG
CAGCAGCAGCAGCAGCAGCAGCAGCGGTGGCGGCGGCAGCAGCGGCAGGA
GCTCCTCGCGCCAGGGCCGGCGGGGCGGGGAACGGAGTATGCGCAAGCAC
CCCG
back to top