mRNA_L-elsbetiae_contig4910.12854.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4910.12854.1
Unique NamemRNA_L-elsbetiae_contig4910.12854.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4910.12854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4910contigL-elsbetiae_contig4910:734..1596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size348
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816487.8142416-CDS-L-elsbetiae_contig4910:733..8521622816487.8142416-CDS-L-elsbetiae_contig4910:733..852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4910 734..852 +
1691683595.54147-CDS-L-elsbetiae_contig4910:733..8521691683595.54147-CDS-L-elsbetiae_contig4910:733..852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4910 734..852 +
1622816487.8249245-CDS-L-elsbetiae_contig4910:1367..15961622816487.8249245-CDS-L-elsbetiae_contig4910:1367..1596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4910 1368..1596 +
1691683595.5519247-CDS-L-elsbetiae_contig4910:1367..15961691683595.5519247-CDS-L-elsbetiae_contig4910:1367..1596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4910 1368..1596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4910.12854.1prot_L-elsbetiae_contig4910.12854.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4910 734..1596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4910.12854.1

>prot_L-elsbetiae_contig4910.12854.1 ID=prot_L-elsbetiae_contig4910.12854.1|Name=mRNA_L-elsbetiae_contig4910.12854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
MSGPHPRASLTFFLGRRQAAGYRIHCLCGHLFYCRRLGIWQKVTHSEALL
LRDESLKSRRSRLKRWSGRQHGGSRRLRWCSCRRRHRPRRLPATAGSSNP
SACSTCRSPNSSSGKN
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mRNA from alignment at L-elsbetiae_contig4910:734..1596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4910.12854.1 ID=mRNA_L-elsbetiae_contig4910.12854.1|Name=mRNA_L-elsbetiae_contig4910.12854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=863bp|location=Sequence derived from alignment at L-elsbetiae_contig4910:734..1596+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGGGCCGCACCCCCGAGCTAGCTTGACTTTTTTTTTGGGCAGGCG
GCAGGCGGCCGGATACCGGATACACTGCTTGTGTGGCCATCTTTTCTATT
GCAGGAGGCTGGGAATCTGGTGAGTGTTCGAACAAACGTGTTTCTATCAA
AAATATTGAAGAACAACATATACTGCCGATCGACGGGATCGAACCCTCTG
CTGGACGCCCGCTCATGCTCTTCTCTCATCTATATGATGCGCACACGGCA
GCAGTGCAACAACCACTGACAGACGTGTGCCGACGGTTATCCCCGAGTAG
CTGTAGCAATTGAAGCCGCTCGGCGTCGGATTACGATCAATATGTACATC
TATGTTGCAGGCGGTGTTGCAAGTTGAATCGATCAAAGTCTGTCTGTCTA
GATGTAGGGTTCGTGTCTTCGTATCTACAGGGTTGGTACCGCCGTAGCAG
AGCTAACCTGCTTGCTATTATAGCAGGGCAAATGCGTACTCCTGTTGGGA
ATTGACCAATCCCCGACGACACGAACTTAAATTCATCTACAATGTGCACC
TTCATTCATCGAGTTTCTCCCCTTACACCCACCCCCACTCCCCTGCCTCA
AAACACTCCTGGGTTACCAACCGATTGCACGCAGGCAGAAAGTGACACAC
AGCGAAGCACTGCTGCTGAGGGACGAGTCTCTGAAATCCCGAAGAAGCCG
CCTGAAAAGGTGGTCCGGGCGGCAGCATGGCGGAAGTCGGCGGCTGCGGT
GGTGCTCTTGCCGGCGAAGACACCGGCCCCGCCGCCTTCCCGCTACCGCC
GGCAGCAGCAACCCCAGCGCGTGCAGCACCTGCAGAAGCCCCAACAGCAG
TAGTGGGAAGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4910:734..1596+

>mRNA_L-elsbetiae_contig4910.12854.1 ID=mRNA_L-elsbetiae_contig4910.12854.1|Name=mRNA_L-elsbetiae_contig4910.12854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig4910:734..1596+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGGGCCGCACCCCCGAGCTAGCTTGACTTTTTTTTTGGGCAGGCG
GCAGGCGGCCGGATACCGGATACACTGCTTGTGTGGCCATCTTTTCTATT
GCAGGAGGCTGGGAATCTGATGTCGGGGCCGCACCCCCGAGCTAGCTTGA
CTTTTTTTTTGGGCAGGCGGCAGGCGGCCGGATACCGGATACACTGCTTG
TGTGGCCATCTTTTCTATTGCAGGAGGCTGGGAATCTGGCAGAAAGTGAC
ACACAGCGAAGCACTGCTGCTGAGGGACGAGTCTCTGAAATCCCGAAGAA
GCCGCCTGAAAAGGTGGTCCGGGCGGCAGCATGGCGGAAGTCGGCGGCTG
CGGTGGTGCTCTTGCCGGCGAAGACACCGGCCCCGCCGCCTTCCCGCTAC
CGCCGGCAGCAGCAACCCCAGCGCGTGCAGCACCTGCAGAAGCCCCAACA
GCAGTAGTGGGAAGAACGCAGAAAGTGACACACAGCGAAGCACTGCTGCT
GAGGGACGAGTCTCTGAAATCCCGAAGAAGCCGCCTGAAAAGGTGGTCCG
GGCGGCAGCATGGCGGAAGTCGGCGGCTGCGGTGGTGCTCTTGCCGGCGA
AGACACCGGCCCCGCCGCCTTCCCGCTACCGCCGGCAGCAGCAACCCCAG
CGCGTGCAGCACCTGCAGAAGCCCCAACAGCAGTAGTGGGAAGAAC
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