mRNA_L-elsbetiae_contig491.12853.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig491.12853.1 vs. uniprot
Match: D7G7U6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U6_ECTSI) HSP 1 Score: 486 bits (1250), Expect = 5.350e-162 Identity = 342/617 (55.43%), Postives = 404/617 (65.48%), Query Frame = 1 Query: 100 IQDETSHELSSFDILGRLPPFPAT----------------PRGSLR-----EGMAPGTGRSTESGLEHALERASCDSDEELEVIRGSVRSLRAQRAAVEKLKAKARKEEGAAKALRRKLGEAEHRIQELRAQGGRDVVRRLMDEVTELRARLKATSTAFQTREKSVAELRGAVQHLRLDLRTGQEKTRAQARKLEEQGRESXXXRVTIRXXXXXXXXXXXXXXXXXXSAEDKCAASGRELASLSALLREANAALGASKGTMQAALAKQARKLEAVRKDKESLMSHKGQAKERLQELTSLCDRQRSKLAEATIRASGLERAASAAKEDTRLAEDQTARLRAELSEVDRSRREEDAGATIKLRTAARQAEELKAELASVKSEAAEKARQLIRHRDEMSRFRQDVNTLREATAQQGDIRQALRDRDETIKDLRQRLELERRERGQWGQARKQLLMEFCEEENKLRSTLQPVQQQRPQXXXXXXXXXXXRRHAAEQQQRRPVVDLDQAPPARSEQHPVENTP-SRHSTMYSVHSAATNGEAGDSGAEGRFRSGSRVARGQEEKGGEGSGDDSLFDFTRRTRAAVGIVGTDAFGVGDVGGHE--------ASDEFIMRPGQQ 1860 +++ S + SFD+LG LP P T P+ EG+A GTG STESGLE ER S DSD+ELE IRGSVRSLRAQRAAVEKLK KAR RAQGGRDVVRRLMDEVTELRARLKATSTAFQTRE SVA+LR AVQ L LDLR GQEK RAQ+RKLE+Q CAASGRELASLSALLREANA L ASKG+MQA +AKQA KLEA RK+KESL+ KGQ +ER++ELTS+C+RQRSKLA+A RA LER ASAAK++TRLA++Q A+L+ ELS D+ RREEDAGATIKLRTAARQ EEL++E+ VKSEAAEKARQL+RHRDEMS FR+DV+ LREA QQGD+RQA+RDRDETI+DLR++LELERRERGQWGQARKQLL+EFCEEENKLRSTLQP Q Q P+ + ++Q R L+ APP S++ + P SRH+T+ ++ TNG++ S A R + VAR +E+ G+ + L D A G+ D G G +GG+E ASDEF MRPGQQ Sbjct: 1 MENTNSSQDLSFDVLGVLPTVPTTTPLEPSLIGSHTRTGRPQSHHSYALGGEGIASGTGGSTESGLEQGFERESYDSDQELEAIRGSVRSLRAQRAAVEKLKEKARLXXXXXXXXXXXXXXXXXXXXXXRAQGGRDVVRRLMDEVTELRARLKATSTAFQTRENSVADLREAVQTLTLDLRAGQEKARAQSRKLEQQ-----------------------------------CAASGRELASLSALLREANATLDASKGSMQATVAKQAEKLEAARKEKESLLFEKGQTQERVKELTSMCERQRSKLADAGHRARELERLASAAKKETRLAQEQAAKLKTELSAADKRRREEDAGATIKLRTAARQVEELRSEVVLVKSEAAEKARQLVRHRDEMSAFREDVSKLREAAVQQGDMRQAVRDRDETIRDLRRQLELERRERGQWGQARKQLLLEFCEEENKLRSTLQPAQHQEPR---------------STRRQGRKQAILEHAPPTGSDRRLTRHKPLSRHATIRNIR---TNGDSRRSSANSSLRGEACVAREEEKVFGDSEAGEVLLDL-----AGGGV--RDG-GTGTLGGYEEGNSSRTMASDEFEMRPGQQ 556 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig491.12853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig491.12853.1 >prot_L-elsbetiae_contig491.12853.1 ID=prot_L-elsbetiae_contig491.12853.1|Name=mRNA_L-elsbetiae_contig491.12853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=600bp MSTGSWATGHQRIQDETSHELSSFDILGRLPPFPATPRGSLREGMAPGTGback to top mRNA from alignment at L-elsbetiae_contig491:25625..31057- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig491.12853.1 ID=mRNA_L-elsbetiae_contig491.12853.1|Name=mRNA_L-elsbetiae_contig491.12853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5433bp|location=Sequence derived from alignment at L-elsbetiae_contig491:25625..31057- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig491:25625..31057- >mRNA_L-elsbetiae_contig491.12853.1 ID=mRNA_L-elsbetiae_contig491.12853.1|Name=mRNA_L-elsbetiae_contig491.12853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3600bp|location=Sequence derived from alignment at L-elsbetiae_contig491:25625..31057- (Laminarionema elsbetiae ELsaHSoW15)back to top |