Homology
BLAST of mRNA_L-elsbetiae_contig491.12852.1 vs. uniprot
Match:
D7G7U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U4_ECTSI)
HSP 1 Score: 153 bits (386), Expect = 6.220e-42
Identity = 78/105 (74.29%), Postives = 84/105 (80.00%), Query Frame = 2
Query: 2 VTYDRLVADFEALECVRSQRXXXXXXXXXXXPDDSDATSGALAAEEAAERYLSKMPAAHQTRDAVSACWRALSEHQQFCRLTTPEKLQMINHRPLQPVAVHLMIE 316
VTYDRLVADFEALECVR QR P DS ++ GALAAEEA ERYLSKMPAA +TR+AVSACWRALSEH+ FCRLTTPEKLQMINHRP Q VAVHL+ E
Sbjct: 4 VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLVSE 108
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig491.12852.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 6.22e-42 / Id = 74.29 Sequence D7G7U4_ECTSI
Match Name E-value Identity Description
D7G7U4_ECTSI 6.220e-42 74.29 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Ec32 ortholog description RNA polymerase II, Rpb4
Ec32 ortholog Ec-06_000280.1
Exons 4
Model size 1267
Cds size 333
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816487.5306604-UTR-L-elsbetiae_contig491:22346..22509 1622816487.5306604-UTR-L-elsbetiae_contig491:22346..22509 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig491 22347..22509 +
1691683595.331871-UTR-L-elsbetiae_contig491:22346..22509 1691683595.331871-UTR-L-elsbetiae_contig491:22346..22509 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig491 22347..22509 +
1622816487.5915482-UTR-L-elsbetiae_contig491:24275..25046 1622816487.5915482-UTR-L-elsbetiae_contig491:24275..25046 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig491 24276..25046 +
1691683595.3870325-UTR-L-elsbetiae_contig491:24275..25046 1691683595.3870325-UTR-L-elsbetiae_contig491:24275..25046 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig491 24276..25046 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816487.5446522-CDS-L-elsbetiae_contig491:22509..22539 1622816487.5446522-CDS-L-elsbetiae_contig491:22509..22539 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig491 22510..22539 +
1691683595.3457372-CDS-L-elsbetiae_contig491:22509..22539 1691683595.3457372-CDS-L-elsbetiae_contig491:22509..22539 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig491 22510..22539 +
1622816487.556104-CDS-L-elsbetiae_contig491:22981..23095 1622816487.556104-CDS-L-elsbetiae_contig491:22981..23095 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig491 22982..23095 +
1691683595.3584197-CDS-L-elsbetiae_contig491:22981..23095 1691683595.3584197-CDS-L-elsbetiae_contig491:22981..23095 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig491 22982..23095 +
1622816487.569858-CDS-L-elsbetiae_contig491:23645..23807 1622816487.569858-CDS-L-elsbetiae_contig491:23645..23807 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig491 23646..23807 +
1691683595.3683312-CDS-L-elsbetiae_contig491:23645..23807 1691683595.3683312-CDS-L-elsbetiae_contig491:23645..23807 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig491 23646..23807 +
1622816487.5807738-CDS-L-elsbetiae_contig491:24248..24275 1622816487.5807738-CDS-L-elsbetiae_contig491:24248..24275 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig491 24249..24275 +
1691683595.3777418-CDS-L-elsbetiae_contig491:24248..24275 1691683595.3777418-CDS-L-elsbetiae_contig491:24248..24275 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig491 24249..24275 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig491.12852.1
>prot_L-elsbetiae_contig491.12852.1 ID=prot_L-elsbetiae_contig491.12852.1|Name=mRNA_L-elsbetiae_contig491.12852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MPAAHQTRDAVSACWRALSEHQQFCRLTTPEKLQMINHRPLQPVAVHLMI EDCHRRFRDDALVEELIALLEKHVRAYLHKYQWGCTSLSNGRGRSLQTVP VWLGSAESGE* back to top mRNA from alignment at L-elsbetiae_contig491:22347..25046+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig491.12852.1 ID=mRNA_L-elsbetiae_contig491.12852.1|Name=mRNA_L-elsbetiae_contig491.12852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2700bp|location=Sequence derived from alignment at L-elsbetiae_contig491:22347..25046+ (Laminarionema elsbetiae ELsaHSoW15)GGTCACGTACGATAGGCTGGTTGCGGACTTTGAAGCGCTGGAATGTGTGC
GTAGCCAGCGCCAACGGCGACAAGCTAACCAGGCAAAGGAGCCTCCGGAC
GACAGCGATGCCACGAGCGGAGCTTTGGCAGCCGAGGAAGCGGCAGAGCG
GTACTTGTCCAAG ATGCCTGCCGCTCATCAGACAAGAGATGCG GTGAGGA
GTGGGGTGACGGTGCATGAAAATATATCGTCGCTTATTTGTTCGTCTTTT
GATGTTTTTGGTGTGGTTGCTTTGCTGCGTTGCTGTGGTATCGAAAGCCA
TGTTCTGTGAGGGTGTGTCCAGTGGGGGGTTGGGAGAGGAAACACACGAG
AGACACTCTATTTCGACGGTTGCCACATATTTATTGATGAAACCATGTGC
CAGGGGTGGTAGAAAGCTCTGCCCGGTATTCGTATTGCTAACGCCCTGTA
CATAGCAGTAATGCAGGTGAAAGTGCTAGGTGCCGGGATGGAGCCCGCAA
GAATCGCTTTTGTAATTGTACCAGAGCAGCCACACTGCCAACGCTGCTGG
TTTGCCATTTCGCCGCGAACACTCTTTTTGCTGGCCCTTAATAGCGCCTG
TCACTGGCATCCCCAACCCCGCGTTGCCTCCTAAGGTGTCTGCGTGCTGG
CGAGCGCTTTCGGAGCACCAGCAGTTCTGCCGGCTCACCACCCCGGAGAA
GCTTCAGATGATCAATCACCGCCCGCTGCAGCCTGTAGCAGTGCACTTG G
TGAGAAAGCACAAGCACACGTTTGGGTGCGTGCCACAAGCCGCCGTAGGC
CGTGCTAGTTCTTGTTATCAGGAACTCGTTTCCTCTCTTCGTCTTGACGC
CTTGGAATTGTTAGAGCAGGCCGTTGATTGTAATGTGCTTGTTCTATTTA
TTACAATGGCATTATTTTCTGGCCCTTATGATAAGCGCTGCACACAAGCT
ATGTATGTATGTACCAGGTATGTGTATCTACCCCACGCGCGTGAGTGCCT
CACAGCAATCGTGTGATGACCAGGACCTTTTCGCTTTGTGGGTTATTCTT
GAGCATCAGTGACAGGCACTGCTCCCCCGTGAAAAGGCTCGCGCATCATA
CCAGAGGCGGAAGAAGTTGCACGCGCTTGTTGGCGGTGAATATTACAATA
TACGAAGTACAATACAATACAATAGGGTTCGCTCGACTTCTGTTCTTGGC
GACATAAAATCACTTCGCCGCTGCCAAAGATCGTTGCACTTGTGCACGAG
GTGACCATGCTCGATGGCTTCGCGTTCGGTGGGTTGCCGCGCCTCGCAGA
TGATCGAAGACTGCCATCGCAGATTCCGCGACGATGCGCTAGTGGAGGAA
CTCATCGCACTCTTGGAGAAGCACGTGAGAGCTTACCTACATAAGTACCA
GTGGGGCTGCACTTCCCTGTCAAATGGTCGTGGCCGAAGCCTTCAGACCG
TTCCCGTGTGG GTGTGAAACTATCTGTCTACCGGGGAGAAAGGGGCACAT
TTGGGTGAAAGATGAACACGAGTGATTGCTGCTGTTGTAGACAAACAGCC
CTTGGCTGCGCTCGTTAGCTCTGCGAGCAGCAAGTGCCGTGGCTGCATCC
CGGAAAACCTTGTTTCCTGCTGTACATACTATATACAAGTGTACCTGCCC
TGAATGAACAGAACATGCCAGCCGACGTTACCGAATCTCCGCTCGTACCC
ATCAAGGATATTCCGCTGAATAAAACATGACGTTACTGAGTGTACTACAC
GAGCCCTCAACTTCAAACCAAATGTCATGTTTTCCTCGAGCCAAATCAGT
GTTGTGTTGATGAGACCCCAACAAGTGTCTACATCTCCATATCTCTATCG
AATGCCACGTCCAAAACTGCTGCTGCCATCAACCTTTCAATCTTATCGGC
AGCTTGGATCTGCGGAGAGCGGCGAGTGA CGCGGATAACGGTTCGCTTGG
ATTGGCTTAACCTGCGCTAAACAAAATTCGTGGAGCTTTGTGGAAGCACG
CGGCTATCTGGGAGAGTCGGGAGCAGCTACGCTCGAGCTTTGCCTCGGTC
TGGTTTCGAAGCAACACCGTCCGCCATAAGCCGAGTTTCGACATGGTCAT
GTCCCGTTAGCGAGGCTAGTAGGCGAGGCTATGTAGGTTGCATCCCGGGG
AGGAAGCTCCTGTAATATCGTGTGTAGATATAGTCACCATTTTCCTCGGC
ATGGTTGTCATAACGATGTTGCTGTCACCAAGCGGGTGCGGATATTCGTC
ACGATGTATGTATATAAATATAAATCGCCTGGGGTAGCCCAGCCTCGTCT
GAGTACCCTTCCTTATTTGATGTAGGTAGGAACTACAGAGTGTGGATGAC
GAGGCAAGATGAGGAGGAGAGAGAAAAGAGATCTGGGAGTATCTTTGGTG
CATGCCGGAAGATAACTGGTGTGGCCCCTTTGTCTCGGTCCATTTGCTAG
GCACAGCAGGAATCGCAAAGCCCACGTAGAGTAAAGCAAGAGCCCCTCTG
ACCACAGCCTACACTATTTGCACCATAAAGATCCAGGAATGGCTGATCTA
CAGCAGTAGGGGCCTCTGTGGAGTTCGAGGCGTCGGCCTACTGTACACGT
CCCAAAAAAAAGACGGACTTGACCGCACACTCCCCAGCTCCTCGCCCTCG
CGCTTTGGACGCACATCGTCACCACGCCCTCTTGCGATCGGAAAACCTCA
back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig491:22347..25046+
>mRNA_L-elsbetiae_contig491.12852.1 ID=mRNA_L-elsbetiae_contig491.12852.1|Name=mRNA_L-elsbetiae_contig491.12852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig491:22347..25046+ (Laminarionema elsbetiae ELsaHSoW15) ATGCCTGCCGCTCATCAGACAAGAGATGCGATGCCTGCCGCTCATCAGAC AAGAGATGCGGTGTCTGCGTGCTGGCGAGCGCTTTCGGAGCACCAGCAGT TCTGCCGGCTCACCACCCCGGAGAAGCTTCAGATGATCAATCACCGCCCG CTGCAGCCTGTAGCAGTGCACTTGGTGTCTGCGTGCTGGCGAGCGCTTTC GGAGCACCAGCAGTTCTGCCGGCTCACCACCCCGGAGAAGCTTCAGATGA TCAATCACCGCCCGCTGCAGCCTGTAGCAGTGCACTTGATGATCGAAGAC TGCCATCGCAGATTCCGCGACGATGCGCTAGTGGAGGAACTCATCGCACT CTTGGAGAAGCACGTGAGAGCTTACCTACATAAGTACCAGTGGGGCTGCA CTTCCCTGTCAAATGGTCGTGGCCGAAGCCTTCAGACCGTTCCCGTGTGG ATGATCGAAGACTGCCATCGCAGATTCCGCGACGATGCGCTAGTGGAGGA ACTCATCGCACTCTTGGAGAAGCACGTGAGAGCTTACCTACATAAGTACC AGTGGGGCTGCACTTCCCTGTCAAATGGTCGTGGCCGAAGCCTTCAGACC GTTCCCGTGTGGCTTGGATCTGCGGAGAGCGGCGAGTGACTTGGATCTGC GGAGAGCGGCGAGTGA back to top