mRNA_L-elsbetiae_contig4907.12845.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4907.12845.1
Unique NamemRNA_L-elsbetiae_contig4907.12845.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4907.12845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4907contigL-elsbetiae_contig4907:3984..6633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000450.1
Exons2
Model size749
Cds size747
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816486.7509875-CDS-L-elsbetiae_contig4907:3983..40191622816486.7509875-CDS-L-elsbetiae_contig4907:3983..4019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4907 3984..4019 +
1691683594.7899055-CDS-L-elsbetiae_contig4907:3983..40191691683594.7899055-CDS-L-elsbetiae_contig4907:3983..4019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4907 3984..4019 +
1622816486.7645915-CDS-L-elsbetiae_contig4907:5921..66321622816486.7645915-CDS-L-elsbetiae_contig4907:5921..6632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4907 5922..6632 +
1691683594.8017602-CDS-L-elsbetiae_contig4907:5921..66321691683594.8017602-CDS-L-elsbetiae_contig4907:5921..6632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4907 5922..6632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4907.12845.1prot_L-elsbetiae_contig4907.12845.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4907 3984..6632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4907.12845.1

>prot_L-elsbetiae_contig4907.12845.1 ID=prot_L-elsbetiae_contig4907.12845.1|Name=mRNA_L-elsbetiae_contig4907.12845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp
KNIHTIGAHETKETLVMEPTPPADGMPYSGASPAAAAAATPSVGSTRGPR
VKQASQIAGTKASSGSSASLGGSQKKKRKTSSSSPSATAKPRRRLAKGKG
KGKGTRRNYPPVPSPADCRWTSNAEQFEEARAKAAPLTTPTTAPAPEPPA
PALVVAASSGASPTLGLAAAAAAAACTVVAAGGAGATTAARGKARRPWEW
SKEDCAAVAKDAISSFSGFTGAGPAGAGAGGVSLLVGAGGAMIFSDSDG
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mRNA from alignment at L-elsbetiae_contig4907:3984..6633+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4907.12845.1 ID=mRNA_L-elsbetiae_contig4907.12845.1|Name=mRNA_L-elsbetiae_contig4907.12845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2650bp|location=Sequence derived from alignment at L-elsbetiae_contig4907:3984..6633+ (Laminarionema elsbetiae ELsaHSoW15)
AAGAACATACATACGATAGGTGCCCACGAGACGAAGGTGAGAAAAGGGTG
TGGTCAACAGGATCAGTGTTAGGGATGAACATTTCAAGGAAAAGATGGAT
TGAAGGGGCTTCTGCTGCTGTGCATGTGATCGTGTGTCGGCTTTCATGTT
TCAAGTCAAGCTGGCCTGTACCGCACACCACGGCGTAAGAAGAGGGGAGC
GTGGCGAGTACTCACGGCGGTCCTGATCATCATACACCCGATCTCACCCC
TATCAGACACCCCTGTCACAAGCACGGCCGCCGGTGGGTCCCGCTCGCAG
GCTGATTGGCTTAGGGGGCCCTGCCAGTGATCGTCTTCTCGGTCTGTTTC
ATCTTTACAGAGCTCCTCTCTCGTTCTGTCTTGTGCAAAGACATTTATCT
AGATTGACTAAAGTGCATCCGGGGTTCTCGCGCCGACGGGGTACCCCAGC
ACTTGTTTACTCTTGGTATTCTCCCCTCTGCCTTGGCAACCCCCGACGGA
GTTCGTTATTTTCTCACGGTAGTCTATCTAGAAGTCTAGCTAGCTCCGCG
TCTGCTCCCTGATGTCCACCCCCCCCCCCTCCTGTGTGACCCCGGTTGGG
TCGTCTAGCTAGTCGTAGTGGAGGAAGGGGGCCACAATGGGACAGACGAC
GAAGAACCCCTCCCCATAGGTAACATTAGCTTGGCCCCTGTTTCTTTGCA
ACGGCGAATAAAAGGGTGGGGTGACAAAACGATTTTTGGAATTAGGCAAA
TTTGAAAATGCCCGAACAAGCACACAGCCGGTCTACCGGACCAGTAGGGA
AGCGTTGCGCAAGAAAAAAACTGTTATTTAGTTCGCTCACCCAGCGGGTA
GCGGGGCTGTTCTTTGCATACACATCACACGGTCTACCTCCAACCGCGAA
CTTTAAAATCAACACAAAAATTCCGGCACTCTAAAACCAAGACAGAACAG
ACCATTTTGCGGTCGTTCAAAATAAGGCTCGGGATATGAAATTTTTCGTA
CTACGCAGCTCTGCGCGTAGAGGACACCATGGAGAAGGGTGTGATGCGTG
CTGGCATGTGAAAATCTACTGCTGGGGTCGAGTTATGGAGTACTGCAACA
GTAGCTCCACAGAACTCCGCAATCGGCCGACGACTGCAAACATCCATTGC
TGAGTTCGCCGCCACAGACCCCAACCTCCTGAACTGCGGGTCCACAGCAG
TAGCTCATACCACTAGCTACTGCTGGAGACCCGTGGTTGTGGAGGTTGGG
ATCTGCGGTGGCGAGCACAGCAGTGGATGTCTGCTGTCGTTGGCCCAGAT
TGCGGGGTTCTGCAGGACTGCTGCGGTGCTCGAAAACTCCGCCTCAGAAG
CACATCTGCACATGCCGCACGCATCACACCCTTCTCCATGGTGTCCTCTA
CGCATAGAGCTGTGTCGTACGAAGAACACCTGATCCTAAACCTTTTTAGA
AGCTAAGCGGTTTAACTTGGTTTTTGAATAGGCAGAGGGGGCCCGGAATT
TTTTGTCTTGGAGTTTTTGAGGACATGTTTCCCAGCGTTGTCACCCCCCC
CCTTAATTTAAAGTTTACATGTTCGAGGGGCCTATCTGGTCTGTCTCATC
GAGACGAGGCCGACGACAGAGTTTTGAGGGCAGACGAGAAGCTAAATGAC
GTTGTTTTCTGAACCTGAACTTACCGACTTAAGGTGGCGCCGCTTCCGTG
TACCGACCTATGTATGCCACATGTTCAGCACGTTATGTTCAAAACACAAC
CACGAACGAACTACTTCTCGATTCACGGGGAAGTACATATATCTACAGGA
AACAAAAATTCAAGCCGGTATCGTCTGCCATTGAAGGAGACAGAATGATC
CCGCCGAAACCGTACGGAAATGCCGTTCTTCTTTTACAGCAGTGGTGTGC
GCGTGTTTCTTGTCGCCGGATGTGCGTTGCTTCCCCAGGAAACTTTGGTG
ATGGAACCCACTCCACCTGCCGACGGCATGCCATACAGCGGCGCTTCTCC
CGCCGCTGCCGCTGCCGCTACACCTAGCGTTGGGTCGACACGGGGGCCTC
GAGTGAAGCAGGCCAGCCAAATCGCCGGCACCAAAGCTTCGAGCGGCAGT
AGCGCATCGCTTGGAGGCTCGCAAAAGAAGAAACGGAAGACTTCGTCCTC
GTCCCCCTCGGCGACAGCGAAACCACGACGCCGTCTCGCCAAAGGCAAAG
GCAAAGGCAAAGGCACTCGTCGCAATTACCCCCCGGTCCCGTCGCCCGCC
GATTGTCGATGGACGAGCAACGCAGAGCAGTTCGAAGAGGCCCGCGCGAA
GGCGGCCCCGCTCACCACACCCACAACCGCACCTGCACCCGAACCGCCCG
CGCCAGCGCTTGTGGTAGCGGCAAGCTCAGGCGCCTCACCCACCTTAGGC
CTGGCTGCTGCTGCTGCTGCTGCTGCTTGCACGGTGGTGGCGGCAGGCGG
TGCGGGAGCCACCACTGCAGCGCGAGGGAAAGCCCGGCGGCCGTGGGAGT
GGTCCAAAGAAGACTGCGCCGCGGTGGCCAAGGATGCAATCTCCTCGTTC
TCTGGTTTCACGGGAGCGGGGCCCGCCGGTGCTGGAGCCGGAGGGGTTTC
GCTGTTGGTGGGTGCGGGGGGGGCGATGATTTTCTCCGATAGCGATGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4907:3984..6633+

>mRNA_L-elsbetiae_contig4907.12845.1 ID=mRNA_L-elsbetiae_contig4907.12845.1|Name=mRNA_L-elsbetiae_contig4907.12845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig4907:3984..6633+ (Laminarionema elsbetiae ELsaHSoW15)
AAGAACATACATACGATAGGTGCCCACGAGACGAAGAAGAACATACATAC
GATAGGTGCCCACGAGACGAAGGAAACTTTGGTGATGGAACCCACTCCAC
CTGCCGACGGCATGCCATACAGCGGCGCTTCTCCCGCCGCTGCCGCTGCC
GCTACACCTAGCGTTGGGTCGACACGGGGGCCTCGAGTGAAGCAGGCCAG
CCAAATCGCCGGCACCAAAGCTTCGAGCGGCAGTAGCGCATCGCTTGGAG
GCTCGCAAAAGAAGAAACGGAAGACTTCGTCCTCGTCCCCCTCGGCGACA
GCGAAACCACGACGCCGTCTCGCCAAAGGCAAAGGCAAAGGCAAAGGCAC
TCGTCGCAATTACCCCCCGGTCCCGTCGCCCGCCGATTGTCGATGGACGA
GCAACGCAGAGCAGTTCGAAGAGGCCCGCGCGAAGGCGGCCCCGCTCACC
ACACCCACAACCGCACCTGCACCCGAACCGCCCGCGCCAGCGCTTGTGGT
AGCGGCAAGCTCAGGCGCCTCACCCACCTTAGGCCTGGCTGCTGCTGCTG
CTGCTGCTGCTTGCACGGTGGTGGCGGCAGGCGGTGCGGGAGCCACCACT
GCAGCGCGAGGGAAAGCCCGGCGGCCGTGGGAGTGGTCCAAAGAAGACTG
CGCCGCGGTGGCCAAGGATGCAATCTCCTCGTTCTCTGGTTTCACGGGAG
CGGGGCCCGCCGGTGCTGGAGCCGGAGGGGTTTCGCTGTTGGTGGGTGCG
GGGGGGGCGATGATTTTCTCCGATAGCGATGGTGAAACTTTGGTGATGGA
ACCCACTCCACCTGCCGACGGCATGCCATACAGCGGCGCTTCTCCCGCCG
CTGCCGCTGCCGCTACACCTAGCGTTGGGTCGACACGGGGGCCTCGAGTG
AAGCAGGCCAGCCAAATCGCCGGCACCAAAGCTTCGAGCGGCAGTAGCGC
ATCGCTTGGAGGCTCGCAAAAGAAGAAACGGAAGACTTCGTCCTCGTCCC
CCTCGGCGACAGCGAAACCACGACGCCGTCTCGCCAAAGGCAAAGGCAAA
GGCAAAGGCACTCGTCGCAATTACCCCCCGGTCCCGTCGCCCGCCGATTG
TCGATGGACGAGCAACGCAGAGCAGTTCGAAGAGGCCCGCGCGAAGGCGG
CCCCGCTCACCACACCCACAACCGCACCTGCACCCGAACCGCCCGCGCCA
GCGCTTGTGGTAGCGGCAAGCTCAGGCGCCTCACCCACCTTAGGCCTGGC
TGCTGCTGCTGCTGCTGCTGCTTGCACGGTGGTGGCGGCAGGCGGTGCGG
GAGCCACCACTGCAGCGCGAGGGAAAGCCCGGCGGCCGTGGGAGTGGTCC
AAAGAAGACTGCGCCGCGGTGGCCAAGGATGCAATCTCCTCGTTCTCTGG
TTTCACGGGAGCGGGGCCCGCCGGTGCTGGAGCCGGAGGGGTTTCGCTGT
TGGTGGGTGCGGGGGGGGCGATGATTTTCTCCGATAGCGATGGT
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