mRNA_L-elsbetiae_contig4906.12843.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4906.12843.1
Unique NamemRNA_L-elsbetiae_contig4906.12843.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4906.12843.1 vs. uniprot
Match: D7G6K5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K5_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 3.870e-26
Identity = 57/123 (46.34%), Postives = 75/123 (60.98%), Query Frame = -1 
Query:  340 PMLLRRSPLMCDCGVDGVSSDAVDWVSFNREAFEMEFERVNGKMSNGGGGAGAK---------GGVSRAIDGCECAKREGSLSCARLVACPVVTRCILKVPEPVCTACEEDDDFIGGDFFELF 681
            PML+ R+  MC+C +  + S+AVDWV+FN EAFE E +R+  ++    G    K         GG+ R +DGCEC       SC+RLVACP+VTR IL+VPEPVC  CE+     G D F+LF
Sbjct: 1064 PMLIGRASQMCECDMGAILSNAVDWVAFNGEAFEEELQRMEARLRLSPGTMAGKNVKDEGCSGGGMGRILDGCECNLESSVSSCSRLVACPIVTRRILRVPEPVCPECEDGSGVFGTDLFDLF 1186
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BLAST of mRNA_L-elsbetiae_contig4906.12843.1 vs. uniprot
Match: A0A6H5JAV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAV0_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.330e-25
Identity = 54/123 (43.90%), Postives = 77/123 (62.60%), Query Frame = -1 
Query:  340 PMLLRRSPLMCDCGVDGVSSDAVDWVSFNREAFEMEFERVNGKMS---------NGGGGAGAKGGVSRAIDGCECAKREGSLSCARLVACPVVTRCILKVPEPVCTACEEDDDFIGGDFFELF 681
            PML+ R+  MC+C ++ + S+AVDWV+FN EAFE E +R+  ++          +G     ++GG+ R +D CEC       SC+RLVACP+VTR IL+VP+PVC  CE+     G D F+LF
Sbjct:  820 PMLIGRASQMCECDMEAILSNAVDWVAFNGEAFEEELQRMEARLKLPPGTMAGKDGKNEGCSEGGMGRILDRCECKLERSVSSCSRLVACPIVTRRILRVPKPVCPECEDGSGVFGTDLFDLF 942
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4906.12843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6K5_ECTSI3.870e-2646.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JAV0_9PHAE4.330e-2543.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4906contigL-elsbetiae_contig4906:12863..13546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size686
Cds size453
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816486.5261748-UTR-L-elsbetiae_contig4906:12862..130931622816486.5261748-UTR-L-elsbetiae_contig4906:12862..13093Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4906 12863..13093 +
1691683594.6311092-UTR-L-elsbetiae_contig4906:12862..130931691683594.6311092-UTR-L-elsbetiae_contig4906:12862..13093Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4906 12863..13093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816486.5405235-CDS-L-elsbetiae_contig4906:13093..135461622816486.5405235-CDS-L-elsbetiae_contig4906:13093..13546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 13094..13546 +
1691683594.6423824-CDS-L-elsbetiae_contig4906:13093..135461691683594.6423824-CDS-L-elsbetiae_contig4906:13093..13546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 13094..13546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4906.12843.1prot_L-elsbetiae_contig4906.12843.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4906 13094..13546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4906.12843.1

>prot_L-elsbetiae_contig4906.12843.1 ID=prot_L-elsbetiae_contig4906.12843.1|Name=mRNA_L-elsbetiae_contig4906.12843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MGEVDSRRYTRLYTRWRRCNFPETSLALEASPKDLRKQFEKVPTDEIVVL
FACRAHRLGHLQDAAGHDGARHQAGARQRPLALGALAPINRPRNSSFGAR
SPSPVRHLPVHPFELHLECLPVEAHPVDRVAADAVHAAVAHQGRSAEQHR
Q
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mRNA from alignment at L-elsbetiae_contig4906:12863..13546+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4906.12843.1 ID=mRNA_L-elsbetiae_contig4906.12843.1|Name=mRNA_L-elsbetiae_contig4906.12843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig4906:12863..13546+ (Laminarionema elsbetiae ELsaHSoW15)
TTCACGTTTGTTTCTAACCATGCAGCCTCCAGCGGCAAGTCTAAATAAGC
CATGTTGCCAAAATTCGCGTACCCATTGCCAACCAGCACTAACGTTCTAT
CTCTCACGTTGAATTCCCCTTCTCGGATAGGAACCGCCCTATGGCGATAC
CGAGGGCGGGCATGAGCGCGAGAGATAGCCTGAAGCAAAACATTACGCGA
CCGTGCCACCCTGTCATCTCTAAATCTGGAAATGGGGGAAGTCGACAGTC
GGCGCTACACACGGTTGTACACACGCTGGCGCCGGTGCAATTTTCCGGAA
ACATCTCTCGCTCTGGAAGCGTCTCCGAAGGATCTACGGAAACAATTCGA
AAAAGTCCCCACCGATGAAATCGTCGTCCTCTTCGCATGCCGTGCACACC
GGCTCGGGCACCTTCAGGATGCAGCGGGTCACGACGGGGCACGCCACCAA
GCGGGCGCAAGACAACGACCCCTCGCGCTTGGCGCACTCGCACCCATCAA
TCGCCCTAGAAACTCCTCCTTTGGCGCCCGCTCCCCCTCCCCCGTTAGAC
ATCTTCCCGTTCACCCTTTCGAACTCCATCTCGAATGCCTCCCGGTTGAA
GCTCACCCAGTCGACCGCGTCGCTGCTGACGCCGTCCACGCCGCAGTCGC
ACATCAGGGGAGATCGGCGGAGCAGCATCGGCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4906:12863..13546+

>mRNA_L-elsbetiae_contig4906.12843.1 ID=mRNA_L-elsbetiae_contig4906.12843.1|Name=mRNA_L-elsbetiae_contig4906.12843.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig4906:12863..13546+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGAAGTCGACAGTCGGCGCTACACACGGTTGTACACACGCTGGCG
CCGGTGCAATTTTCCGGAAACATCTCTCGCTCTGGAAGCGTCTCCGAAGG
ATCTACGGAAACAATTCGAAAAAGTCCCCACCGATGAAATCGTCGTCCTC
TTCGCATGCCGTGCACACCGGCTCGGGCACCTTCAGGATGCAGCGGGTCA
CGACGGGGCACGCCACCAAGCGGGCGCAAGACAACGACCCCTCGCGCTTG
GCGCACTCGCACCCATCAATCGCCCTAGAAACTCCTCCTTTGGCGCCCGC
TCCCCCTCCCCCGTTAGACATCTTCCCGTTCACCCTTTCGAACTCCATCT
CGAATGCCTCCCGGTTGAAGCTCACCCAGTCGACCGCGTCGCTGCTGACG
CCGTCCACGCCGCAGTCGCACATCAGGGGAGATCGGCGGAGCAGCATCGG
CAAATGGGGGAAGTCGACAGTCGGCGCTACACACGGTTGTACACACGCTG
GCGCCGGTGCAATTTTCCGGAAACATCTCTCGCTCTGGAAGCGTCTCCGA
AGGATCTACGGAAACAATTCGAAAAAGTCCCCACCGATGAAATCGTCGTC
CTCTTCGCATGCCGTGCACACCGGCTCGGGCACCTTCAGGATGCAGCGGG
TCACGACGGGGCACGCCACCAAGCGGGCGCAAGACAACGACCCCTCGCGC
TTGGCGCACTCGCACCCATCAATCGCCCTAGAAACTCCTCCTTTGGCGCC
CGCTCCCCCTCCCCCGTTAGACATCTTCCCGTTCACCCTTTCGAACTCCA
TCTCGAATGCCTCCCGGTTGAAGCTCACCCAGTCGACCGCGTCGCTGCTG
ACGCCGTCCACGCCGCAGTCGCACATCAGGGGAGATCGGCGGAGCAGCAT
CGGCAA
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