mRNA_L-elsbetiae_contig4906.12842.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4906.12842.1
Unique NamemRNA_L-elsbetiae_contig4906.12842.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4906.12842.1 vs. uniprot
Match: D7G6K5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K5_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 3.790e-31
Identity = 66/138 (47.83%), Postives = 83/138 (60.14%), Query Frame = 1 
Query:   28 DAAAVXXXXXLVVLPMLLR*SPLMCDCGVDGVSSDAVDWVSFNREAFESEFDRVNGKMSNGGGGAGAK---------GGVSRAIDGCECAKREGSLSCARLVACPVVTRRILKVPEPVCTACEDDDDFLGGDLFNLFS 414
            DAAA      LVV PML+  +  MC+C +  + S+AVDWV+FN EAFE E  R+  ++    G    K         GG+ R +DGCEC       SC+RLVACP+VTRRIL+VPEPVC  CED     G DLF+LF+
Sbjct: 1050 DAAAFGAVVALVVAPMLIGRASQMCECDMGAILSNAVDWVAFNGEAFEEELQRMEARLRLSPGTMAGKNVKDEGCSGGGMGRILDGCECNLESSVSSCSRLVACPIVTRRILRVPEPVCPECEDGSGVFGTDLFDLFA 1187
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BLAST of mRNA_L-elsbetiae_contig4906.12842.1 vs. uniprot
Match: A0A6H5JAV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAV0_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.490e-29
Identity = 62/138 (44.93%), Postives = 84/138 (60.87%), Query Frame = 1 
Query:   28 DAAAVXXXXXLVVLPMLLR*SPLMCDCGVDGVSSDAVDWVSFNREAFESEFDRVNGKMS---------NGGGGAGAKGGVSRAIDGCECAKREGSLSCARLVACPVVTRRILKVPEPVCTACEDDDDFLGGDLFNLFS 414
            DA A      LVV PML+  +  MC+C ++ + S+AVDWV+FN EAFE E  R+  ++          +G     ++GG+ R +D CEC       SC+RLVACP+VTRRIL+VP+PVC  CED     G DLF+LF+
Sbjct:  806 DATAFGDVVALVVAPMLIGRASQMCECDMEAILSNAVDWVAFNGEAFEEELQRMEARLKLPPGTMAGKDGKNEGCSEGGMGRILDRCECKLERSVSSCSRLVACPIVTRRILRVPKPVCPECEDGSGVFGTDLFDLFA 943
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4906.12842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6K5_ECTSI3.790e-3147.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JAV0_9PHAE1.490e-2944.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4906contigL-elsbetiae_contig4906:10949..11533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue8.7e-24
Seed eggNOG ortholog2880.D7G6K5
Hectar predicted targeting categoryother localisation
EggNOG OGs2EGD3@1,2SAJF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size585
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4906.12842.1prot_L-elsbetiae_contig4906.12842.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4906 11045..11365 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816486.695006-UTR-L-elsbetiae_contig4906:10948..110441622816486.695006-UTR-L-elsbetiae_contig4906:10948..11044Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4906 10949..11044 +
1691683594.7457173-UTR-L-elsbetiae_contig4906:10948..110441691683594.7457173-UTR-L-elsbetiae_contig4906:10948..11044Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4906 10949..11044 +
1622816486.7182558-UTR-L-elsbetiae_contig4906:11365..115331622816486.7182558-UTR-L-elsbetiae_contig4906:11365..11533Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4906 11366..11533 +
1691683594.7710392-UTR-L-elsbetiae_contig4906:11365..115331691683594.7710392-UTR-L-elsbetiae_contig4906:11365..11533Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4906 11366..11533 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816486.7072659-CDS-L-elsbetiae_contig4906:11044..113651622816486.7072659-CDS-L-elsbetiae_contig4906:11044..11365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 11045..11365 +
1691683594.761601-CDS-L-elsbetiae_contig4906:11044..113651691683594.761601-CDS-L-elsbetiae_contig4906:11044..11365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4906 11045..11365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4906.12842.1

>prot_L-elsbetiae_contig4906.12842.1 ID=prot_L-elsbetiae_contig4906.12842.1|Name=mRNA_L-elsbetiae_contig4906.12842.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MCDCGVDGVSSDAVDWVSFNREAFESEFDRVNGKMSNGGGGAGAKGGVSR
AIDGCECAKREGSLSCARLVACPVVTRRILKVPEPVCTACEDDDDFLGGD
LFNLFS*
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mRNA from alignment at L-elsbetiae_contig4906:10949..11533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4906.12842.1 ID=mRNA_L-elsbetiae_contig4906.12842.1|Name=mRNA_L-elsbetiae_contig4906.12842.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=585bp|location=Sequence derived from alignment at L-elsbetiae_contig4906:10949..11533+ (Laminarionema elsbetiae ELsaHSoW15)
GCCACCCTCGACAGCAGCGACGGCCGCGATGCCGCCGCTGTCGCCGCCGT
GGCCGCGCTTGTCGTGTTGCCGATGCTGCTCCGCTGATCTCCCCTGATGT
GCGACTGCGGCGTGGACGGCGTCAGCAGCGACGCGGTCGACTGGGTGAGC
TTCAACCGGGAGGCATTCGAGAGCGAGTTCGACAGGGTGAACGGTAAAAT
GTCCAACGGGGGAGGGGGAGCGGGCGCCAAAGGAGGAGTTTCTAGGGCGA
TTGATGGGTGCGAGTGCGCCAAGCGCGAGGGGTCGTTGTCTTGCGCCCGA
TTGGTGGCGTGCCCCGTCGTGACCCGCCGCATTCTGAAGGTGCCCGAGCC
GGTGTGCACGGCGTGCGAAGACGACGACGATTTCCTTGGCGGGGACCTTT
TTAACCTGTTTTCGTAGTCACTTTAGTGATGCTAAGCTTCGGATCACACT
GCCGAACAGCTGCCCCAGCCCCACAGCGTGTACGCAGACGATAGCAGCGT
CGGTCGTCGACCTCAAGACGCACATAGAGGGCGACATCAACCTCGTACCC
TAGGTCACACCTCGGGGGCCATGTCGGCCTTGTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4906:10949..11533+

>mRNA_L-elsbetiae_contig4906.12842.1 ID=mRNA_L-elsbetiae_contig4906.12842.1|Name=mRNA_L-elsbetiae_contig4906.12842.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig4906:10949..11533+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCGACTGCGGCGTGGACGGCGTCAGCAGCGACGCGGTCGACTGGGT
GAGCTTCAACCGGGAGGCATTCGAGAGCGAGTTCGACAGGGTGAACGGTA
AAATGTCCAACGGGGGAGGGGGAGCGGGCGCCAAAGGAGGAGTTTCTAGG
GCGATTGATGGGTGCGAGTGCGCCAAGCGCGAGGGGTCGTTGTCTTGCGC
CCGATTGGTGGCGTGCCCCGTCGTGACCCGCCGCATTCTGAAGGTGCCCG
AGCCGGTGTGCACGGCGTGCGAAGACGACGACGATTTCCTTGGCGGGGAC
CTTTTTAACCTGTTTTCGTAGATGTGCGACTGCGGCGTGGACGGCGTCAG
CAGCGACGCGGTCGACTGGGTGAGCTTCAACCGGGAGGCATTCGAGAGCG
AGTTCGACAGGGTGAACGGTAAAATGTCCAACGGGGGAGGGGGAGCGGGC
GCCAAAGGAGGAGTTTCTAGGGCGATTGATGGGTGCGAGTGCGCCAAGCG
CGAGGGGTCGTTGTCTTGCGCCCGATTGGTGGCGTGCCCCGTCGTGACCC
GCCGCATTCTGAAGGTGCCCGAGCCGGTGTGCACGGCGTGCGAAGACGAC
GACGATTTCCTTGGCGGGGACCTTTTTAACCTGTTTTCGTAG
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