mRNA_L-elsbetiae_contig4905.12837.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig4905.12837.1 vs. uniprot
Match: D8LDX3_ECTSI (Exocyst subunit Exo70 family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDX3_ECTSI) HSP 1 Score: 526 bits (1356), Expect = 1.120e-178 Identity = 303/388 (78.09%), Postives = 321/388 (82.73%), Query Frame = 1 Query: 1 QMENINECFLLEKELRGVVQKGMRGNVGAVEYLEEMRRINDAIVYFRKWPSLKSQKDAIRGLEELSSMAAKECIDEFNRLMRTVGPAVQFQASITQTNTFESVNTLSDNVAQSLAAIGECLTLLKHNRQLRQNYTASRRVAVKTALDKWESKFESTPKGQQARGGGPWLRFYVDFSTKLVAAERLLWERALKASDSSSFSSGGDHGDGEEGSGGM---EAEAAFVMVVTPVIEKLVREVDRKLQSSLAEMRDRSKDDGGVGGAAGSXXXXXXXAG-----SSQIRARARPTSSSHVAMKDGDIPADVVVSLMEMSDALHKGSYSLQDILKVGGDEPSSKGDRDARGAQGXXXXXXXXXXXXXDAERGQGGRATDTLAAVQRRLSRVCM 1140 +ME+INECFLLEKELRGVVQKGMRGNVGAVEYLEEMRRI+DAI YFRKWPSLKSQK+AI+GLEELSSMAAKECIDEFNRLMRTVGPAVQFQ TQTNTFESVNTLSDNVAQSLAAIGECLTLL+H+ QLRQNYTA+RRVAVKTALDKWESKFE TPKGQQARGGGPWLRFYVDFSTKLV AERLLWERALKASDSSS GGD G G+G EAEAAFVMVV PVIEKLVREVDRKLQSSLAE+RDRS G GA XXXXXXX SSQIRAR RP SS+ A+KDGDIPAD+VV+LMEMSDALHKGSYSLQDILKVGGD+ SKGD RG Q A RG+ +ATD LAAVQRRLSR C+ Sbjct: 75 KMESINECFLLEKELRGVVQKGMRGNVGAVEYLEEMRRIDDAIAYFRKWPSLKSQKEAIKGLEELSSMAAKECIDEFNRLMRTVGPAVQFQ---TQTNTFESVNTLSDNVAQSLAAIGECLTLLRHSGQLRQNYTAARRVAVKTALDKWESKFEITPKGQQARGGGPWLRFYVDFSTKLVTAERLLWERALKASDSSSSKGGGDAGKDGRGAGSRSLEEAEAAFVMVVNPVIEKLVREVDRKLQSSLAEVRDRSGKKEGATGAGXXXXXXXXXXXXXXXXSSQIRARTRPVSSTQAAVKDGDIPADIVVALMEMSDALHKGSYSLQDILKVGGDDSGSKGDD--RGYQSRRGSVVYASPDSA-ARRGRTNKATDALAAVQRRLSRACL 456
BLAST of mRNA_L-elsbetiae_contig4905.12837.1 vs. uniprot
Match: A0A835YN31_9STRA (Exocyst subunit Exo70 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN31_9STRA) HSP 1 Score: 174 bits (442), Expect = 6.220e-45 Identity = 125/339 (36.87%), Postives = 178/339 (52.51%), Query Frame = 1 Query: 1 QMENINECFLLEKELRGVVQKGMRGNVGA--VEYLEEMRRINDAIVYFRKWPSLKSQKDAIRGLEELSSMAAKECIDEFNRLMRTVGPAVQFQASITQTNTFESVNTLSDNVAQSLAAIGECLTLLKHNRQLRQNYTASRRVAVKTALDKWESKFESTP----KGQQARG------GGPWLRFYVDFSTKLVAAERLLWERALKASDSSSFSSGGDHGDGEEGSGGMEAEAAFVMVVTPVIEKLVREVDRKLQSSLAEMRDRSKDDGGVGGAAGSXXXXXXXAGSSQIRARARPTSSSHVAMKDGDIPADVVVSLMEMSDALHKGSYSLQDILKVGGDE 981 +ME +NE F LE E R + +G+RG A EY +++RR+ +A+ +FR PSL+SQ A+ GL L + AA EC++E+ RLMR VGP+VQF A+ + +E V LS+ A LAA+ L LL+ LRQ Y ++RRV V L W KFE P +G A G L Y+DF+ KLVA ERLLWE+AL + H D + AE AF+ VV+ V++KLVR+VD +Q +L E++ G +GGA+ RAR +V L+E+ D L++G+ L +L++GG E Sbjct: 42 EMEKVNEYFTLEAEKRDAIARGVRGGGPARLAEYADDVRRVLEAMAFFRALPSLRSQGTALSGLTALCNTAAAECLEEYGRLMRAVGPSVQFNAAA---DAYEPVAPLSEAGAAGLAAVQGALELLEKRSALRQAYASARRVTVAATLRAWSEKFEPAPAVAGRGAPAADKSMVVMGAARLSAYLDFAVKLVAGERLLWEQALAVNPLR-------HRD-------IAAEEAFLTVVSSVVDKLVRDVDVGVQDALQELKSAQ---GEIGGAS-----------------RARRVEG--------------MVLLLEVGDTLNRGTALLLRVLRMGGAE 329 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4905.12837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4905.12837.1 >prot_L-elsbetiae_contig4905.12837.1 ID=prot_L-elsbetiae_contig4905.12837.1|Name=mRNA_L-elsbetiae_contig4905.12837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=379bp MENINECFLLEKELRGVVQKGMRGNVGAVEYLEEMRRINDAIVYFRKWPSback to top mRNA from alignment at L-elsbetiae_contig4905:125..12378+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig4905.12837.1 ID=mRNA_L-elsbetiae_contig4905.12837.1|Name=mRNA_L-elsbetiae_contig4905.12837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=12254bp|location=Sequence derived from alignment at L-elsbetiae_contig4905:125..12378+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig4905:125..12378+ >mRNA_L-elsbetiae_contig4905.12837.1 ID=mRNA_L-elsbetiae_contig4905.12837.1|Name=mRNA_L-elsbetiae_contig4905.12837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2274bp|location=Sequence derived from alignment at L-elsbetiae_contig4905:125..12378+ (Laminarionema elsbetiae ELsaHSoW15)back to top |