mRNA_L-elsbetiae_contig4904.12836.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig4904.12836.1 vs. uniprot
Match: D7G695_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G695_ECTSI) HSP 1 Score: 551 bits (1421), Expect = 1.750e-176 Identity = 404/609 (66.34%), Postives = 444/609 (72.91%), Query Frame = 1 Query: 1 RGRHNDGDRAVTRERRNGGGDWRESLRNTRHEENLQEKAVADKRKKLLRAIPSSIPGVSAVMRGDARSDIREIEALVDMQVLEAEAVAPGAVQATPRPAMPKANQVEPKRTRMERWKKDPSEREKDMAKQRESLARAEKEDAQLVAEHDAWERWYLVLRAHLTATRRPAATWSPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------GDVNGKLDGGGDAGYLSAAKGGEEQEEEERVRELQTVVMKRAGLEGEFDMSKVLIVLAACSRDAMSARRKHVALVEKRGGGGGKACPGVAARGSAGPPEKDTGHDKDQAPPHPGDEGSLRRWEELLRSVDVTGGRWRPDVVGGGI--ADPVGEDDDDMDTTGPARSPTGTLSRRARQQQHD----KPLVPRGLDLLPSMRAPR--LLSATNTSNGGGGAKAAEAKEKAAGIIEYVPSIGGSAGRRGLKAGKPGTLAAAAPAANGIQDRVQWFPRALPKEAATAAGGKSQDEQESAMFNTRASMAIDRLGEQVGETAKRQAEMEMKRREKVEEAVRLVRAAADHEKLRQGHLLRMKTLRAQLESLEETKGPSSPPPSGQA 1779 RGRHNDGDRAVTR+RRN G DWRESLRN+R EE EKAVADKRKKL+RAIP++IPGVSAV+RGDARSDIREIEALVDMQVL+ E VAPGAVQATPRP MPKANQ+EPKR RM RWKKDPSE EKDMAKQRE+L +AE+ED QL AE DAWERWYLVLRAHLTA RRP ATWSPAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GD GK G GGE ERVR L+ VMKRAGLEG+FDM+KVL VLA CSRDAM AR++H LV K+ GG A G G+ E++ A PHPGDEGSLRRWEELLRS V GGRWRP V+ GG+ A P G D D +GP +P SR +PLVP+GLDLLPSMRAPR L + G GA A E A IEYVP + GS + AG G A PAA G+ DRVQWFPR LPKE+ T G QDE+ESA+FNTRASMAIDRLGEQV ET+KRQAEME++RREKV EAV LVRAAADHE++RQ H RMK LRAQL+SLE TKGPSSP +GQA Sbjct: 42 RGRHNDGDRAVTRDRRNAGSDWRESLRNSRQEE--MEKAVADKRKKLVRAIPTTIPGVSAVVRGDARSDIREIEALVDMQVLQPEEVAPGAVQATPRPPMPKANQLEPKRARMARWKKDPSEMEKDMAKQREALKKAEEEDEQLEAERDAWERWYLVLRAHLTAGRRPTATWSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSTGKAVDNG-----RFRTGGEXXXXXERVRGLEVEVMKRAGLEGKFDMTKVLNVLAGCSRDAMFARQEHTTLVAKQQSGG-DAKAGAKDGGAEHEGERN------DASPHPGDEGSLRRWEELLRSAHVNGGRWRPGVIEGGVTNAPPGGTSTDTDDASGP--TPRTASSRXXXXXXXXXXXREPLVPKGLDLLPSMRAPRYMLRPGEHADISGSGATA----EDEAQAIEYVPWVVGSGSSGRVMAGHTGGAATPMPAAGGVNDRVQWFPRGLPKESVT---GMGQDERESALFNTRASMAIDRLGEQVEETSKRQAEMEIRRREKVGEAVCLVRAAADHERVRQDHFRRMKALRAQLQSLEGTKGPSSP--NGQA 625
BLAST of mRNA_L-elsbetiae_contig4904.12836.1 vs. uniprot
Match: A0A6H5KJ15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ15_9PHAE) HSP 1 Score: 527 bits (1357), Expect = 4.790e-167 Identity = 394/623 (63.24%), Postives = 436/623 (69.98%), Query Frame = 1 Query: 1 RGRHNDGDRAVTRERR--------------NGGGDWRESLRNTRHEENLQEKAVADKRKKLLRAIPSSIPGVSAVMRGDARSDIREIEALVDMQVLEAEAVAPGAVQATPRPAMPKANQVEPKRTRMERWKKDPSEREKDMAKQRESLARAEKEDAQLVAEHDAWERWYLVLRAHLTATRRPAATWSPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------GDVNGKLDGGGDAGYLSAAKGGEEQEEEERVRELQTVVMKRAGLEGEFDMSKVLIVLAACSRDAMSARRKHVALVEKRGGGGGKACPGVAARGSAGPPEKDTGHDKDQAPPHPGDEGSLRRWEELLRSVDVTGGRWRPDVVGGGI--ADPVGEDDDDMDTTGPARSPTGTLSRRA----RQQQHDKPLVPRGLDLLPSMRAPRLLS--ATNTSNGGGGAKAAEAKEKAAGIIEYVPSIGGSAGRRGLKAGKPGTLAAAAPAANGIQDRVQWFPRALPKEAATAAGGKSQDEQESAMFNTRASMAIDRLGEQVGETAKRQAEMEMKRREKVEEAVRLVRAAADHEKLRQGHLLRMKTLRAQLESLEETKGPSS 1758 RGRHNDGDRAVTR+RR N G DWRESLRN R EE EKA+ADKRKKL+RAIP++IPGVSAV+RGDARSDIREIEALVDMQVL+ E VAPGAVQATPRP MPKANQ+EPKR RM RWKKDPSE EKDMAKQRE+L +AEKED QL AE AWERWYLVLRAHLTA RRP ATWSPAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GD GK G E RVR + VMKRAGLEG+FDM+KVL VLA CSRDAMSAR++H L+ K+ GG A G E + +D+A PHPGDEGSLRRWEELLRS V G RWRP V+ GG+ A P G D D +GP GT S R +QQQ +PLVP+GLDLLPSMRAPR + + G GA A + + IEYVP + GS + AG G AA AA G+ DRVQWFPR LPKE+ T G QD++ESA+FNTRASMAIDRLGEQV ET+KRQAEME++RREKV EAV LVRAAADHE++RQ H RMK LRAQLESLE TK PSS Sbjct: 11 RGRHNDGDRAVTRDRRLVSIVRTIIIGVLWNAGSDWRESLRNARQEE--MEKAIADKRKKLVRAIPTNIPGVSAVVRGDARSDIREIEALVDMQVLQPEEVAPGAVQATPRPPMPKANQLEPKRARMARWKKDPSEIEKDMAKQREALKKAEKEDEQLEAERHAWERWYLVLRAHLTAGRRPTATWSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGTGKAVNDGRYRXXXXXXXXXE-----RVRGFEAEVMKRAGLEGKFDMTKVLNVLAGCSRDAMSARQEHTTLIAKQQSGGDSKA---GAEGGGAEHEGE----RDEALPHPGDEGSLRRWEELLRSAHVHGVRWRPGVIEGGLTNAPPRGTLTDTDDASGPT---PGTASLRGGDRQQQQQQREPLVPKGLDLLPSMRAPRYMPRPGEHVDISGSGATAKDGAQ----AIEYVPWVVGSGSSGRVMAGHTGGAAAPMLAAGGVNDRVQWFPRGLPKESVT---GMGQDQRESALFNTRASMAIDRLGEQVEETSKRQAEMEIRRREKVGEAVCLVRAAADHERVRQDHFRRMKALRAQLESLEGTKRPSS 609 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4904.12836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4904.12836.1 >prot_L-elsbetiae_contig4904.12836.1 ID=prot_L-elsbetiae_contig4904.12836.1|Name=mRNA_L-elsbetiae_contig4904.12836.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=862bp MRGDARSDIREIEALVDMQVLEAEAVAPGAVQATPRPAMPKANQVEPKRTback to top mRNA from alignment at L-elsbetiae_contig4904:3380..11491- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig4904.12836.1 ID=mRNA_L-elsbetiae_contig4904.12836.1|Name=mRNA_L-elsbetiae_contig4904.12836.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8112bp|location=Sequence derived from alignment at L-elsbetiae_contig4904:3380..11491- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig4904:3380..11491- >mRNA_L-elsbetiae_contig4904.12836.1 ID=mRNA_L-elsbetiae_contig4904.12836.1|Name=mRNA_L-elsbetiae_contig4904.12836.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5172bp|location=Sequence derived from alignment at L-elsbetiae_contig4904:3380..11491- (Laminarionema elsbetiae ELsaHSoW15)back to top |