mRNA_L-elsbetiae_contig490.12830.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig490.12830.1
Unique NamemRNA_L-elsbetiae_contig490.12830.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig490.12830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig490contigL-elsbetiae_contig490:1713..3298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size410
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig490.12830.1prot_L-elsbetiae_contig490.12830.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig490 1713..3298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816485.4704075-CDS-L-elsbetiae_contig490:1712..17931622816485.4704075-CDS-L-elsbetiae_contig490:1712..1793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig490 1713..1793 +
1691683593.9296405-CDS-L-elsbetiae_contig490:1712..17931691683593.9296405-CDS-L-elsbetiae_contig490:1712..1793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig490 1713..1793 +
1622816485.4860942-CDS-L-elsbetiae_contig490:2344..24371622816485.4860942-CDS-L-elsbetiae_contig490:2344..2437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig490 2345..2437 +
1691683593.94422-CDS-L-elsbetiae_contig490:2344..24371691683593.94422-CDS-L-elsbetiae_contig490:2344..2437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig490 2345..2437 +
1622816485.5016088-CDS-L-elsbetiae_contig490:2701..28001622816485.5016088-CDS-L-elsbetiae_contig490:2701..2800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig490 2702..2800 +
1691683593.957394-CDS-L-elsbetiae_contig490:2701..28001691683593.957394-CDS-L-elsbetiae_contig490:2701..2800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig490 2702..2800 +
1622816485.5141973-CDS-L-elsbetiae_contig490:3163..32981622816485.5141973-CDS-L-elsbetiae_contig490:3163..3298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig490 3164..3298 +
1691683593.9686546-CDS-L-elsbetiae_contig490:3163..32981691683593.9686546-CDS-L-elsbetiae_contig490:3163..3298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig490 3164..3298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig490.12830.1

>prot_L-elsbetiae_contig490.12830.1 ID=prot_L-elsbetiae_contig490.12830.1|Name=mRNA_L-elsbetiae_contig490.12830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
LSKGALKGKNKLQRNRAKRKAARVHDEEAYVATKRIRVRPASQKLTPAQQ
LAGPHPDDALGDRLRAGNHEVPAEVVEHVHLADRGDLFPHEEEAAAEESA
APAAWGALGGRSRTNNCGKHESPGRRPGSGGCSSTS
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mRNA from alignment at L-elsbetiae_contig490:1713..3298+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig490.12830.1 ID=mRNA_L-elsbetiae_contig490.12830.1|Name=mRNA_L-elsbetiae_contig490.12830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1586bp|location=Sequence derived from alignment at L-elsbetiae_contig490:1713..3298+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAGCAAGGGCGCTTTGAAGGGGAAGAACAAGTTGCAGCGCAACAGGGC
CAAGCGCAAAGCGGCGCGCGTTCACGACGAGGTGAATGTTTGTTTTTGTT
CAAGCCTCTAATAACGTAGCCTTTGCAGCCGGAAGCCACCCCTCTCGTCC
GCCTTCAACCTGTCGGCTAGCTGCAGTGCGATGCCCTGCATTACTCGGGC
AGTGCCTGAAGCCCGGCCGACGTTGGATGTTTCATCTTTCTAGTCTAGAC
TATGCTCCTTTGTCCTGTCCTTGGGCGTGCCAGCAGAGTATAGGGCGTCG
GCGCCGTGTGTGGCGAGAGCTTGATGGCAGCGAATATGATCAACCTTTCT
TACTTAGCCTCTCCGGTGGAGTTTCCCGGAAAACTTGACTCGAGCGAGAG
GGCTGGGTGGTGGCTGATATGCTTGATAGTTGATCCTTGGACGTGTTTGG
GGCCAGGTGGCACAAGTATACGCTGGCGATAGGTAGGAAGGGGGCCTTCA
AACATGTACCGTGCGTGTTTCCCCGGCAACAAGTGAACACCAAGGAATCA
GCATCTTCGTGACTTTTTGCGAGCAAGGTGTCTTGGTTCACTCTCCAGTT
TTGTCTTCGTCTTGGTTCGCAACGACATTCAGGAGGCCTACGTGGCAACG
AAGCGGATTCGTGTTCGACCCGCGAGTCAAAAGCTGACGCCGGCTCAGCA
GCTCGCGGGACCACACCCTGATGATGTGAGCGGCAGGTGGTGTTGGTGAT
GCTATTGCTATTGTTGCTGCTATTTGCATCACACAGTAGTTGCCCCTACG
TTGGCAGCAAAACGATTGCCTCTCGTCTTGTAGCGGCATTTTGTCCAAAC
CTAACAGCGGGGCCAATTCTCCGTTCGGCTTGCAAAGCTGAAGCACCCAA
CCATGCTCTCAAGCGACTGTACAGCCCCCCGCTACAGCCCCGTTAACGAT
GACGCTTCATTCTCCCACGCATACGGTTTGCATCAAAAGGCTTTGGGAGA
TCGGCTGCGCGCCGGAAACCATGAAGTACCGGCCGAAGTGGTGGAGCATG
TGCACCTAGCCGATAGAGGCGATCTGTTCCCACATGAGGTACGTACAAAC
TCCCGTAGATTTCGGCTTTGTTCCCCGGCGCGTGATTGTGGGATATCTTC
CTCCAAGTGTCAGTAATGGATGGACTGAAAACGTTTCGCCCCTCTACCTC
CGAGCTGGGCACGCGGTCGGAGCGACTTCGCCGAATTTTTCAGTACGACC
AAAGAGTTTTCACTCCATCAACAAGGCTGGCAGTACAACACCACTGGTGG
TGGTGGGTGTGGTCATAGCGTGTTTGAATTCAAGTTGAGCCGGTTGCGGT
TTTCCCGTGGGTACGATGTCTCTCTGCCTCACCCCGTCCCACACACCTCC
AATCGCCGCCTCCCCTCTCCCCTCCTCTTCTCTCCTCTTCTCTTCTGTCA
GGAGGAGGCGGCTGCCGAAGAGTCAGCAGCTCCCGCAGCATGGGGTGCGT
TGGGGGGGAGGAGCAGGACGAACAATTGCGGCAAGCACGAGTCACCGGGG
AGGCGGCCTGGCAGCGGCGGCTGCAGCAGCACGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig490:1713..3298+

>mRNA_L-elsbetiae_contig490.12830.1 ID=mRNA_L-elsbetiae_contig490.12830.1|Name=mRNA_L-elsbetiae_contig490.12830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig490:1713..3298+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAGCAAGGGCGCTTTGAAGGGGAAGAACAAGTTGCAGCGCAACAGGGC
CAAGCGCAAAGCGGCGCGCGTTCACGACGAGCTCAGCAAGGGCGCTTTGA
AGGGGAAGAACAAGTTGCAGCGCAACAGGGCCAAGCGCAAAGCGGCGCGC
GTTCACGACGAGGAGGCCTACGTGGCAACGAAGCGGATTCGTGTTCGACC
CGCGAGTCAAAAGCTGACGCCGGCTCAGCAGCTCGCGGGACCACACCCTG
ATGATGAGGCCTACGTGGCAACGAAGCGGATTCGTGTTCGACCCGCGAGT
CAAAAGCTGACGCCGGCTCAGCAGCTCGCGGGACCACACCCTGATGATGC
TTTGGGAGATCGGCTGCGCGCCGGAAACCATGAAGTACCGGCCGAAGTGG
TGGAGCATGTGCACCTAGCCGATAGAGGCGATCTGTTCCCACATGAGGCT
TTGGGAGATCGGCTGCGCGCCGGAAACCATGAAGTACCGGCCGAAGTGGT
GGAGCATGTGCACCTAGCCGATAGAGGCGATCTGTTCCCACATGAGGAGG
AGGCGGCTGCCGAAGAGTCAGCAGCTCCCGCAGCATGGGGTGCGTTGGGG
GGGAGGAGCAGGACGAACAATTGCGGCAAGCACGAGTCACCGGGGAGGCG
GCCTGGCAGCGGCGGCTGCAGCAGCACGAGCGAGGAGGCGGCTGCCGAAG
AGTCAGCAGCTCCCGCAGCATGGGGTGCGTTGGGGGGGAGGAGCAGGACG
AACAATTGCGGCAAGCACGAGTCACCGGGGAGGCGGCCTGGCAGCGGCGG
CTGCAGCAGCACGAGC
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