mRNA_L-elsbetiae_contig4898.12822.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: D7FL54_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL54_ECTSI) HSP 1 Score: 231 bits (588), Expect = 2.330e-76 Identity = 120/128 (93.75%), Postives = 125/128 (97.66%), Query Frame = 1 Query: 1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGAR-VRQQSS 381 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEP+IMN FMASLE++QSVGV+TQKQALLYIGTKMR PPKAGAR +RQQSS Sbjct: 1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVFTQKQALLYIGTKMRVPPKAGARAMRQQSS 128
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE) HSP 1 Score: 232 bits (592), Expect = 7.250e-70 Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 1 Query: 1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGAR-VRQQSS 381 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEP+IMN FMASLE++QSVGVYTQKQALLYIGTKMR PPKAGAR +RQQSS Sbjct: 236 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPDIMNAFMASLEDSQSVGVYTQKQALLYIGTKMRVPPKAGARAMRQQSS 363
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA) HSP 1 Score: 163 bits (413), Expect = 3.400e-44 Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = 1 Query: 1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAP 345 MQEQLSKNRVIIE D K N+SA I SSTHERKSRC IH+K+GKVY+ HN+LGDDVPIVV ++AMG SDQEIVQLVGSEP +++ F S+EEA +VGV TQKQAL YIG KMR P Sbjct: 212 MQEQLSKNRVIIELDNKGNVSANIQSSTHERKSRCAIHVKHGKVYLHHNTLGDDVPIVVFMKAMGVESDQEIVQLVGSEPHLVDAFGESIEEALAVGVMTQKQALKYIGRKMRNP 326
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA) HSP 1 Score: 157 bits (398), Expect = 3.520e-42 Identity = 77/123 (62.60%), Postives = 100/123 (81.30%), Query Frame = 1 Query: 1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGARVR 369 M EQLSKNRVIIE D K N+SAAITSSTH+RKSRCNI KN K+Y+KHNSLGDD+PIV+IL+AMG DQEIVQLVG+EPE++++F SLEE ++G+++Q QAL +IG ++ A ++ + R Sbjct: 66 MHEQLSKNRVIIELDPKDNVSAAITSSTHDRKSRCNIFFKNNKMYLKHNSLGDDIPIVIILKAMGLECDQEIVQLVGTEPEMLDMFAGSLEEPYNLGIFSQDQALTFIGNRVTAVRESNSTAR 188
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: A0A2P4YK15_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YK15_9STRA) HSP 1 Score: 146 bits (369), Expect = 1.660e-40 Identity = 75/118 (63.56%), Postives = 90/118 (76.27%), Query Frame = 1 Query: 7 EQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGA 360 EQLSKNR+IIE DGK N+ A+ITSSTHERKSR NI + G+VY+K NS G D+PIV++ R MG SDQEIV LVGSE +I +V AS EEA + V+TQ+QAL YIG+KM A K GA Sbjct: 186 EQLSKNRIIIEEDGKHNVCASITSSTHERKSRTNIFLNKGRVYLKSNSFGSDIPIVIVFRGMGVESDQEIVSLVGSESDICDVMSASFEEASDLKVFTQQQALEYIGSKMNALTKIGA 303
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA) HSP 1 Score: 148 bits (373), Expect = 8.310e-39 Identity = 77/126 (61.11%), Postives = 95/126 (75.40%), Query Frame = 1 Query: 1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGARVRQQS 378 MQEQLSKNRVIIE D K + +A ITSSTHERKSRC+I +K G+VY+KHN+LG+D+PI ++ +AMG SDQEIVQ+VGSEPE F SLEE + + TQKQAL YIG K+RA + G Q+S Sbjct: 179 MQEQLSKNRVIIEVDSKGHTAATITSSTHERKSRCSIFVKAGRVYLKHNTLGEDMPIAIVFKAMGIESDQEIVQMVGSEPETPAQFALSLEEPVVLQILTQKQALTYIGNKIRANQRPGMNHAQKS 304
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: A0A5A8CMB6_CAFRO (DNA-directed RNA polymerase subunit beta n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CMB6_CAFRO) HSP 1 Score: 146 bits (369), Expect = 2.910e-38 Identity = 74/124 (59.68%), Postives = 95/124 (76.61%), Query Frame = 1 Query: 4 QEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGARVRQQ 375 QEQLSKNR+I+E D K +SA++TSSTHERKSR I K+G++++KHN++GDDVP+V +LRAMG TSDQEIVQLVGSEPE+ + SLEE +G+ TQ QAL YIG ++RA + A V Q Sbjct: 468 QEQLSKNRIIVELDPKGAVSASVTSSTHERKSRTVITTKHGRIHLKHNTIGDDVPVVAVLRAMGVTSDQEIVQLVGSEPELQDALAPSLEETLELGILTQAQALEYIGARIRARRASSALVGMQ 591
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: A0A1V9Z156_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z156_9STRA) HSP 1 Score: 145 bits (366), Expect = 7.190e-38 Identity = 74/118 (62.71%), Postives = 92/118 (77.97%), Query Frame = 1 Query: 7 EQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGA 360 EQLSKNRVI+E DGK N+ A+ITSSTHERKSR NI + GK+Y+K NS DD+PIVV+ R MG TSDQEIV LVG EP++M+ F AS+EE+ + ++TQ QAL YI +KM+ KAGA Sbjct: 208 EQLSKNRVILEEDGKNNVCASITSSTHERKSRTNIFLNKGKIYLKSNSFTDDLPIVVVFRGMGMTSDQEIVSLVGHEPDVMDSFAASIEESSDLKIFTQTQALTYIASKMKI--KAGA 323
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC) HSP 1 Score: 143 bits (361), Expect = 3.450e-37 Identity = 76/114 (66.67%), Postives = 91/114 (79.82%), Query Frame = 1 Query: 1 MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNG-KVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMR 339 MQEQLSKNRVIIE D K N+SA+ITSSTH+RK R NI +KNG KVY+K+N LGDDVPIVV+L+AMG SDQEIV +VG PE+++ F SLEE +G+ TQ QAL YIG K+R Sbjct: 204 MQEQLSKNRVIIEEDNKGNVSASITSSTHDRKGRSNIFVKNGTKVYLKNNLLGDDVPIVVVLKAMGMQSDQEIVCMVGDSPEMLDAFAPSLEEPYHLGICTQAQALRYIGAKIR 317
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Match: K3X1L2_GLOUD (DNA-directed RNA polymerase subunit beta n=32 Tax=Oomycota TaxID=4762 RepID=K3X1L2_GLOUD) HSP 1 Score: 142 bits (359), Expect = 6.410e-37 Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 1 Query: 7 EQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSLGDDVPIVVILRAMGATSDQEIVQLVGSEPEIMNVFMASLEEAQSVGVYTQKQALLYIGTKMRAPPKAGA 360 EQLSKNRVIIE D K+N+ A+ITSSTHERKSR NI + +VY+K NS G D+PIV++ R MG SDQEIV L+GSEP++ + AS EEA + V+TQ QAL YIG+KM A K GA Sbjct: 196 EQLSKNRVIIEEDAKQNVCASITSSTHERKSRTNIFINKNRVYLKSNSFGSDIPIVIVFRGMGMESDQEIVSLIGSEPDVTDALTASFEEASDLKVFTQLQALEYIGSKMNAVTKVGA 313 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4898.12822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4898.12822.1 >prot_L-elsbetiae_contig4898.12822.1 ID=prot_L-elsbetiae_contig4898.12822.1|Name=mRNA_L-elsbetiae_contig4898.12822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp MQEQLSKNRVIIEYDGKKNISAAITSSTHERKSRCNIHMKNGKVYMKHNSback to top mRNA from alignment at L-elsbetiae_contig4898:7282..8934- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig4898.12822.1 ID=mRNA_L-elsbetiae_contig4898.12822.1|Name=mRNA_L-elsbetiae_contig4898.12822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1653bp|location=Sequence derived from alignment at L-elsbetiae_contig4898:7282..8934- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig4898:7282..8934- >mRNA_L-elsbetiae_contig4898.12822.1 ID=mRNA_L-elsbetiae_contig4898.12822.1|Name=mRNA_L-elsbetiae_contig4898.12822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig4898:7282..8934- (Laminarionema elsbetiae ELsaHSoW15)back to top |