mRNA_L-elsbetiae_contig4893.12816.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4893.12816.1
Unique NamemRNA_L-elsbetiae_contig4893.12816.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4893.12816.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.110e-40
Identity = 74/114 (64.91%), Postives = 86/114 (75.44%), Query Frame = 1 
Query:   34 PTGAPTTVLGDGGSSEYPDCPGYVSHIKDGYCDSDLNVASCGWDGGDCCACTCGEGLDSDDELLPRRCGQVGDGYDCQDPDVPADCGVTPSPAASFGFPDCDGPMFSFQDSYCD 375
            PT AP+      GSSEY  C GY +HIKDGYCD+DLN A CGWDGGDCCACTCG   DSD+EL    CGQ+GDGY+C DPDVP DCGVTPSPAA+ G+PDC+  ++ +QD  CD
Sbjct:   53 PTPAPSD-----GSSEYLGCLGYTNHIKDGYCDTDLNNAECGWDGGDCCACTCG--ADSDEELA-HPCGQLGDGYNCLDPDVPDDCGVTPSPAAAIGYPDCEEYLYEWQDGVCD 158
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BLAST of mRNA_L-elsbetiae_contig4893.12816.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 3.140e-40
Identity = 74/114 (64.91%), Postives = 85/114 (74.56%), Query Frame = 1 
Query:   34 PTGAPTTVLGDGGSSEYPDCPGYVSHIKDGYCDSDLNVASCGWDGGDCCACTCGEGLDSDDELLPRRCGQVGDGYDCQDPDVPADCGVTPSPAASFGFPDCDGPMFSFQDSYCD 375
            PT AP+      GS EY  C GY +HIKDGYCD+DLN A CGWDGGDCCACTCG   DSD+EL    CGQ+GDGYDC DPDVP DCGVTPSPAA+ G+PDC+  ++ +QD  CD
Sbjct:   53 PTPAPSD-----GSPEYLGCLGYTNHIKDGYCDTDLNNAECGWDGGDCCACTCGS--DSDEELA-HPCGQLGDGYDCLDPDVPDDCGVTPSPAAAIGYPDCEEYLYEWQDGVCD 158
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BLAST of mRNA_L-elsbetiae_contig4893.12816.1 vs. uniprot
Match: D7FX76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX76_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.370e-26
Identity = 60/121 (49.59%), Postives = 72/121 (59.50%), Query Frame = 1 
Query:   16 SDDTFSPTGAPTTVLGDGGSSEYPDCPGYVSHIKDGYCDSDLNVASCGWDGGDCCACTCGEGLDSDDELLPRRCGQVGDGYDCQDPDVPADCGVTPSPAASFGFPDC-DGPMFSFQDSYCD 375
            S D    T  PT++  D     YP C GY+ HI DGYCD D N A+CG+DGGDCCACTCG  +D+D E     CG +GDGYDC+DPDVP DC +         F  C D   + +QD YCD
Sbjct:  137 SSDAIDVTAGPTSL--DASDDPYPGCGGYIPHIGDGYCDEDNNTAACGFDGGDCCACTCG--VDADVE---HECGLLGDGYDCRDPDVPDDCNLA-------NFAQCEDMNGYDWQDGYCD 243
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BLAST of mRNA_L-elsbetiae_contig4893.12816.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 8.720e-26
Identity = 58/121 (47.93%), Postives = 70/121 (57.85%), Query Frame = 1 
Query:   16 SDDTFSPTGAPTTVLGDGGSSEYPDCPGYVSHIKDGYCDSDLNVASCGWDGGDCCACTCGEGLDSDDELLPRRCGQVGDGYDCQDPDVPADCGVTPSPAASFGFPDCDGPM-FSFQDSYCD 375
            S D    T  PT++  D     YP C GY+ HI DGYCD D N A+CG+DGGDCCACTCG   + D E     CG + DGYDC+DPDVP DC +         F  C+G   + +QD YCD
Sbjct:  139 SSDAIDVTAGPTSL--DASDDPYPGCGGYIPHIGDGYCDEDNNTAACGFDGGDCCACTCGMDAEVDHE-----CGLLNDGYDCRDPDVPEDCNLA-------NFAQCEGMNGYDWQDGYCD 245
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BLAST of mRNA_L-elsbetiae_contig4893.12816.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.180e-8
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   76 SEYPDCPGYVSHIKDGYCDSDLNVASCGWDGGDCCACTC 192
            +E+PDC      + DG+CDS+LN ASCGWDGGDCC C+C
Sbjct:  209 AEFPDCDAGWLGLGDGFCDSELNTASCGWDGGDCCVCSC 247
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BLAST of mRNA_L-elsbetiae_contig4893.12816.1 vs. uniprot
Match: F0YF17_AURAN (Subtilisin n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YF17_AURAN)

HSP 1 Score: 60.1 bits (144), Expect = 5.370e-8
Identity = 38/88 (43.18%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:   25 TFSPTGAPTTVLGDGGSSEYPDCP-GYVSHIKDGYCDS---DLNVASCGWDGGDCCACTCGEGLDSDDELLPRRCGQVGDGYDCQDPD 276
            T +PT  P T L    +S+  DC   Y  ++ DGYCD+     N  +CGWDGGDCC CTC +G  S        CG     YDC+DPD
Sbjct:  629 TPAPTTKPVTPLP---TSDMGDCVVDYPDYVGDGYCDAYGGGYNTEACGWDGGDCCFCTCDDGGSS------YACGP----YDCRDPD 703
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BLAST of mRNA_L-elsbetiae_contig4893.12816.1 vs. uniprot
Match: D7FI88_ECTSI (Similar to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.440e-8
Identity = 36/91 (39.56%), Postives = 43/91 (47.25%), Query Frame = 1 
Query:   97 GYVSHIKDGYCDSDLNVASCGWDGGDCCACTCGEGLDSDDELLPRRCGQVGDGYDCQDPDVPADCGVTPSPAASFGFPDCDGPMFSFQDSY 369
            GYVS I +G+CD + N   CG+DGGDCC+CTC    D D       C      +DCQDP            A+ FG        FSF D Y
Sbjct:   27 GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDD-----YSCSSEYGYFDCQDPT-----------ASCFGEGTTGSDDFSFHDDY 101
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BLAST of mRNA_L-elsbetiae_contig4893.12816.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 7.140e-8
Identity = 36/91 (39.56%), Postives = 43/91 (47.25%), Query Frame = 1 
Query:   97 GYVSHIKDGYCDSDLNVASCGWDGGDCCACTCGEGLDSDDELLPRRCGQVGDGYDCQDPDVPADCGVTPSPAASFGFPDCDGPMFSFQDSY 369
            GYVS I +G+CD + N   CG+DGGDCC+CTC    D D       C      +DCQDP            A+ FG        FSF D Y
Sbjct:  488 GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDD-----YSCSSEYGYFDCQDPS-----------ASCFGEGTTGSDDFSFHDDY 562
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BLAST of mRNA_L-elsbetiae_contig4893.12816.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 7.540e-8
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   70 GSSEYPDCPG-YVSHIKDGYCDSDLNVASCGWDGGDCCACTCGEG-----LDSDDELLPRRCG 240
            G ++Y  C G  V+ I +G CD+ LNVASCG+DGGDCC+CTC +G      DSD + +   CG
Sbjct:   25 GIAQYDSCTGGNVTDIGNGNCDAALNVASCGYDGGDCCSCTCNDGPLHLCADSDFDCMYPDCG 87
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BLAST of mRNA_L-elsbetiae_contig4893.12816.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.400e-7
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   97 GYVSHIKDGYCDSDLNVASCGWDGGDCCACTCGEGLDSDDELLPRRCGQVGDGYDCQDPDVP 282
            GYV  + +G+CD + N   CG+DGGDCC CTC + LD+DD          G+G+ C DP+ P
Sbjct:  125 GYVGSVGNGWCDEENNNEGCGYDGGDCCECTC-QPLDTDDGTDDYFQNGCGNGFACIDPNAP 185
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4893.12816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5J6K0_9PHAE3.110e-4064.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX77_ECTSI3.140e-4064.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FX76_ECTSI1.370e-2649.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVP4_9PHAE8.720e-2647.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5Y7_ECTSI1.180e-861.54Polymorphic Outer membrane protein G/I family n=1 ... [more]
F0YF17_AURAN5.370e-843.18Subtilisin n=1 Tax=Aureococcus anophagefferens Tax... [more]
D7FI88_ECTSI6.440e-839.56Similar to Pappalysin-2 (Pregnancy-associated plas... [more]
A0A6H5JM92_9PHAE7.140e-839.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSC0_ECTSI7.540e-849.21Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7G0S4_ECTSI1.400e-745.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4893contigL-elsbetiae_contig4893:8679..11225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue1.5e-35
Seed eggNOG ortholog2880.D7FX77
Hectar predicted targeting categoryother localisation
EggNOG OGs2E9KF@1,2SFXU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size378
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816483.3859575-CDS-L-elsbetiae_contig4893:8679..88851622816483.3859575-CDS-L-elsbetiae_contig4893:8679..8885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4893 8680..8885 -
1691683592.3403203-CDS-L-elsbetiae_contig4893:8679..88851691683592.3403203-CDS-L-elsbetiae_contig4893:8679..8885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4893 8680..8885 -
1622816483.4013462-CDS-L-elsbetiae_contig4893:11056..112251622816483.4013462-CDS-L-elsbetiae_contig4893:11056..11225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4893 11057..11225 -
1691683592.3515487-CDS-L-elsbetiae_contig4893:11056..112251691683592.3515487-CDS-L-elsbetiae_contig4893:11056..11225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4893 11057..11225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4893.12816.1prot_L-elsbetiae_contig4893.12816.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4893 8680..11225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4893.12816.1

>prot_L-elsbetiae_contig4893.12816.1 ID=prot_L-elsbetiae_contig4893.12816.1|Name=mRNA_L-elsbetiae_contig4893.12816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
GDSGSSDDTFSPTGAPTTVLGDGGSSEYPDCPGYVSHIKDGYCDSDLNVA
SCGWDGGDCCACTCGEGLDSDDELLPRRCGQVGDGYDCQDPDVPADCGVT
PSPAASFGFPDCDGPMFSFQDSYCD
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mRNA from alignment at L-elsbetiae_contig4893:8679..11225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4893.12816.1 ID=mRNA_L-elsbetiae_contig4893.12816.1|Name=mRNA_L-elsbetiae_contig4893.12816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2547bp|location=Sequence derived from alignment at L-elsbetiae_contig4893:8679..11225- (Laminarionema elsbetiae ELsaHSoW15)
GGCGACAGCGGCAGCAGTGACGATACGTTTAGCCCGACGGGGGCTCCGAC
GACAGTATTAGGAGACGGCGGCTCGTCGGAGTATCCCGATTGTCCGGGCT
ACGTGAGCCACATCAAGGACGGGTACTGCGATAGTGACCTGAACGTCGCT
TCTTGCGGATGGGATGGAGGTGCGCATCCACGATCGCACCTAGTCTATAT
TTGTACATGATCTACGAAGTATTTTCGACGCCATTAGTAGATGCACATCC
AGTGTACAGTATACGTGTATCTAATAGGGGCATGTAAATATCCAAGTCCG
TTGCTTTCGACTGACTGAGATTGGGACGGTTGTCCATGTTGCGTGATGGC
GCAATCGAGGCGGTGCGCGCCCCGCTGCAGCTTGTACTCAACTCCGGGTT
GCGAATCGTCCGCACGCACACCCATGCGCAGTAGTCATGATGCCTCCTCC
GCTCCTCCGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTCTCCCATCAC
ATTTAACAAGCTCTTGAGGGGCCTCGTGCCATAGATTTCGATATGTGGTC
ACACGAAAAGGGCTCCCCTCCCTGAGCCCCCCGTATCCACCATGTCTGCG
GTTCTTGCCTTCGGTTTGCGACGCAAGAGTTCAGCAGCATGTATATCTTA
CCTCAATGGGCGCACACAACTCACGTATATCTAAATAGCGCTTTCCGCTG
GGCCAGGAACGAAAGCAGGAGGAATAAAAACTCGTTTTGCCCGCAGGAAA
AGCCCGCTCACGCCGGCGGAATTCAAGCCCGTTCTTGACCTGACTGCTAA
AAGATTATCGGTGTCTCGGGGACCCAACTATTTTGTCTTCCAGGGCGACC
GACCAGCTACTACAGTGTTTTTTGGATTAGTTTTTAAGGGGGCACTTGTT
TCGCTCCCTTACTTCGAGTTCTCGCCGCACAACAGTGCCGTGTTGGTAGT
GAAAAAAGAACAGGTCTGTAGCTCCTGTTCTTCTCGAGGGTGTAGGAAAA
AGAACGAAGCAGATCGATGCTCTAGCCGCCGGCGCGAGGATGGTTTACAC
CGATCACAAGTTCGTCAGGGACTCGCAGAAAAAAGCACGCGCATTAAAGA
CCCCCCCACCAAAAGCCCCCGCCCTCTTATGGTCTCGCGGACACCACTGC
GCCAGCCCTAGGAGCTCACACAACCCATCCCAGACCAAACAAACTAGAGG
GGGCGCGATATGCTGGTCATTGCTACATGTAGTGCCGGTGCAGATTTTAA
ACTCAGAATCGCTCTGTGAGTGTCGAATCAGAGCTCTGCCTTCCCGCTCA
CGTTCGTGCCCTCGGCCAGGCCAGCAGCAGCAGACGGCAGCAACTCGTCT
AATTGCAGCGCAACGAGTTAGCTAATTTCAGCGGGTGCTCTGCACACCTT
AGACCCTCCTCTTACCAACGTGCACGGTCTTGCGCTGGATCTCTTCAGGG
ATAAAAAAAGCTGCGTTTTGTAAGGAATCGTGCTCATCTGTCTCGCAGCT
GGCTCTCTTTTTTCGATTCTCCCTCTCTCTTCCCTACTGTATCCTTTTTT
TGCGATGGCACCTCTAATTGCAGGGCAAGAGCTACTACCTAGATTTTTGG
CCCGCTCTGTAGTCACACATCTCCACTACACAGCCTCAAAGTTTCGCTTT
GGATCACTTCCTGCAAGCTGAGATATCGGCTTCTTGGTGCGTGGGGTATG
CTGAGGCCCTGTGCCTTTTGGCCGTGACGGAAGGCGCTTCCTTAAAAATC
TCCCGCACATGCACCCCCTTGAAATTTGGTTCAAGTAACACTGGCTATAT
CCATATTCCCTGCCCCAAACAAAAAAAGAAAACAATTAATTGAGCACAAT
ATAATAACCCCATACGGTGTGTTTTTGTGCATTTATATTTGTCTCGGAGG
GCAATTAATTTATTTCTTGCCCCAAAGCAGTTTTTGTGCATTTATATTTG
TCTCGGAGGGCAATTAATTTATTTCTTGCCCCAAAGCAAAAAGCAATTAT
TTTAAAAAAAGAAACATACACACACATATCAAGCGCTTTTGTACATTTAT
ACTTCATGTTTGCTCCGGAGGGCAATTAATCTATTAATCTCGCCGCGCAA
GTTGCAGTAGTACTGGTACATAACCCCGACCACCCGCCCTGGCTCATCGC
ACCCCTTAAGATAAGCAGAAATCGAGAAATCGTTATTTTTGCCAAATCAC
GGCAGCAGCAGCAGTAACACTCTTGAATGCGATGATGATGTACACACATA
CCTTCTGTGGTATGTGCATATTTTCATGTGCTCGTGACGTATTCCGGTAT
GTTGCTTCCTGCCTGCCGCGAATGGACAACAACAACCCAGGGGACTGCTG
CGCCTGCACGTGCGGCGAAGGGCTGGATAGCGACGATGAGCTGCTTCCGC
GCCGCTGCGGGCAGGTGGGGGACGGGTACGACTGCCAGGACCCGGACGTG
CCTGCCGACTGCGGGGTGACGCCCAGCCCCGCCGCGTCCTTCGGCTTCCC
GGACTGCGACGGCCCCATGTTCAGCTTCCAGGACTCGTACTGCGATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4893:8679..11225-

>mRNA_L-elsbetiae_contig4893.12816.1 ID=mRNA_L-elsbetiae_contig4893.12816.1|Name=mRNA_L-elsbetiae_contig4893.12816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig4893:8679..11225- (Laminarionema elsbetiae ELsaHSoW15)
GGCGACAGCGGCAGCAGTGACGATACGTTTAGCCCGACGGGGGCTCCGAC
GACAGTATTAGGAGACGGCGGCTCGTCGGAGTATCCCGATTGTCCGGGCT
ACGTGAGCCACATCAAGGACGGGTACTGCGATAGTGACCTGAACGTCGCT
TCTTGCGGATGGGATGGAGGGCGACAGCGGCAGCAGTGACGATACGTTTA
GCCCGACGGGGGCTCCGACGACAGTATTAGGAGACGGCGGCTCGTCGGAG
TATCCCGATTGTCCGGGCTACGTGAGCCACATCAAGGACGGGTACTGCGA
TAGTGACCTGAACGTCGCTTCTTGCGGATGGGATGGAGGGGACTGCTGCG
CCTGCACGTGCGGCGAAGGGCTGGATAGCGACGATGAGCTGCTTCCGCGC
CGCTGCGGGCAGGTGGGGGACGGGTACGACTGCCAGGACCCGGACGTGCC
TGCCGACTGCGGGGTGACGCCCAGCCCCGCCGCGTCCTTCGGCTTCCCGG
ACTGCGACGGCCCCATGTTCAGCTTCCAGGACTCGTACTGCGATGGGACT
GCTGCGCCTGCACGTGCGGCGAAGGGCTGGATAGCGACGATGAGCTGCTT
CCGCGCCGCTGCGGGCAGGTGGGGGACGGGTACGACTGCCAGGACCCGGA
CGTGCCTGCCGACTGCGGGGTGACGCCCAGCCCCGCCGCGTCCTTCGGCT
TCCCGGACTGCGACGGCCCCATGTTCAGCTTCCAGGACTCGTACTGCGAT
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