mRNA_L-elsbetiae_contig4893.12815.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4893.12815.1
Unique NamemRNA_L-elsbetiae_contig4893.12815.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4893.12815.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 5.340e-19
Identity = 50/127 (39.37%), Postives = 62/127 (48.82%), Query Frame = 1 
Query:   28 GDCCVCECDG--YGCGTIAFDCLDPTAGTDCPTPNPALSSTAYSGN---SDSXXXXXXXXXXXXXXXXXXXXXXXXS--GDGYCDPSHNNEGCNWDDGDCCSCNCEDSEFECGIVGFSCLDPASVCS 387
            GDCC C C    Y CG   FDC DP+  TDC T +   S   Y G    +D                         S  GDG+CD  +N+  C WD GDCC C+C D+ ++CG+VG+ CLDP S CS
Sbjct:  337 GDCCACTCVSGYYTCGYYTFDCEDPSVSTDCSTTSTLDSDDWYGGYGYYTDDIWDSGDDFYGTYDVYNYGSTACISSYTGDGWCDSFYNHADCEWDGGDCCECDCVDATYDCGVVGYDCLDPTSSCS 463
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BLAST of mRNA_L-elsbetiae_contig4893.12815.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 9.320e-12
Identity = 44/127 (34.65%), Postives = 54/127 (42.52%), Query Frame = 1 
Query:   28 GDCCVCECDGYG-------CGTIAFDCLDPTAGTDCPTPNPALSSTAYSGNSDSXXXXXXXXXXXXXXXXXXXXXXXXSGDGYCDPSHNNEGCNWDDGDCCSCNCEDSEF-ECGIVGFSCLDPASVC 384
            GDCC C C  Y        CG   +DC+DP A + C T +P  S  A +   +                          GDG CD  +NNE C+WD GDCCSC CE S +  C      C DP + C
Sbjct:  171 GDCCRCTCRDYNSWGYYTNCGYYGYDCMDPDAPSSCSTDSPTPSPAAGTDWPECEGYIYMI------------------GDGSCDYYNNNEECDWDGGDCCSCTCEGSSYYSCSSYSMDCQDPNANC 279
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BLAST of mRNA_L-elsbetiae_contig4893.12815.1 vs. uniprot
Match: A0A6H5K5D1_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D1_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.170e-11
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  247 DGYCDPSHNNEGCNWDDGDCCSCNCEDSEFECGIVGFSCLDPASVC 384
            DG+CD S+N  GC++D GDCCSC+C D  ++CG+VGF+C+DP S C
Sbjct:   37 DGFCDSSNNISGCDYDGGDCCSCDCLDDTYQCGVVGFTCIDPTSSC 82
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BLAST of mRNA_L-elsbetiae_contig4893.12815.1 vs. uniprot
Match: D7FSP3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP3_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.340e-11
Identity = 38/81 (46.91%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:  247 DGYCDPSHNNEGCNWDDGDCCSCNCEDSEFECGIVGFSCLDPASVCSGTSSSGAITGVYHDDDVTSNSP--GYEAGDSGED 483
            DG CD S+NN GC +D GDCCSC+C D  +ECG  GF+CLDP+S C+           Y DD    +SP   Y+  D G+D
Sbjct:   37 DGMCDSSNNNSGCEYDGGDCCSCDCFDDTYECGTDGFTCLDPSSSCT-------YHHYYDDDGDLYDSPTYDYDVDDFGDD 110
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BLAST of mRNA_L-elsbetiae_contig4893.12815.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.930e-11
Identity = 45/129 (34.88%), Postives = 56/129 (43.41%), Query Frame = 1 
Query:   28 GDCCVCEC---------DGYGCG-TIAFDCLDPTAGTDCPTPNPALSSTAYSGNSDSXXXXXXXXXXXXXXXXXXXXXXXXSGDGYCDPSHNNEGCNWDDGDCCSCNCEDSEFECGIVGFSCLDPASVC 384
            GDCC C C         DG  C  +  F C+DP A        P +       N D                          GDG+CD  +NN+ C +D GDCCSC C D  +ECGIVGF C+DP++ C
Sbjct:  269 GDCCSCTCQVPDDDSGDDGSLCSESTVFACIDPDA--------PCV-------NDDDITVDMMDTCGGHPINF---------GDGWCDDDNNNKECGYDSGDCCSCTCVDGTYECGIVGFDCVDPSAEC 373
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BLAST of mRNA_L-elsbetiae_contig4893.12815.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 6.480e-11
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:  247 DGYCDPSHNNEGCNWDDGDCCSCNCEDSEFECGIVGFSCLDPA 375
            DG+CD  +NN  CNWD GDCC C C DS++ECGI GFSCLDP+
Sbjct: 1979 DGWCDLENNNAECNWDGGDCCECTCVDSQYECGIQGFSCLDPS 2021
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BLAST of mRNA_L-elsbetiae_contig4893.12815.1 vs. uniprot
Match: A0A6H5KN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN00_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 5.050e-8
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:  247 DGYCDPSHNNEGCNWDDGDCCSCNCEDSEFECG-IVGFSCLDPASVC 384
            DG CD S+NN  C++D GDCCSC+C D  +ECG +  F+C+DP+S C
Sbjct:  136 DGMCDSSNNNSNCDYDGGDCCSCDCFDDTYECGSVTAFTCIDPSSSC 182
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4893.12815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JVP4_9PHAE5.340e-1939.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX77_ECTSI9.320e-1234.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5D1_9PHAE1.170e-1158.70LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FSP3_ECTSI3.340e-1146.91LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JTT4_9PHAE3.930e-1134.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHG7_ECTSI6.480e-1167.44LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KN00_9PHAE5.050e-855.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4893contigL-elsbetiae_contig4893:3769..5341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue3.9e-12
Seed eggNOG ortholog2880.D7G5Y7
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-25_000960.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size630
Cds size630
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4893.12815.1prot_L-elsbetiae_contig4893.12815.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4893 3769..5341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816483.3192115-CDS-L-elsbetiae_contig4893:3768..41001622816483.3192115-CDS-L-elsbetiae_contig4893:3768..4100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4893 3769..4100 -
1691683592.3051088-CDS-L-elsbetiae_contig4893:3768..41001691683592.3051088-CDS-L-elsbetiae_contig4893:3768..4100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4893 3769..4100 -
1622816483.3354704-CDS-L-elsbetiae_contig4893:4730..47891622816483.3354704-CDS-L-elsbetiae_contig4893:4730..4789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4893 4731..4789 -
1691683592.3175452-CDS-L-elsbetiae_contig4893:4730..47891691683592.3175452-CDS-L-elsbetiae_contig4893:4730..4789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4893 4731..4789 -
1622816483.3498116-CDS-L-elsbetiae_contig4893:5102..53411622816483.3498116-CDS-L-elsbetiae_contig4893:5102..5341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4893 5103..5341 -
1691683592.3277483-CDS-L-elsbetiae_contig4893:5102..53411691683592.3277483-CDS-L-elsbetiae_contig4893:5102..5341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4893 5103..5341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4893.12815.1

>prot_L-elsbetiae_contig4893.12815.1 ID=prot_L-elsbetiae_contig4893.12815.1|Name=mRNA_L-elsbetiae_contig4893.12815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=210bp
MCHDAPSPKGDCCVCECDGYGCGTIAFDCLDPTAGTDCPTPNPALSSTAY
SGNSDSSTAYSGNSDSSTAYSGYYGSECVWSGDGYCDPSHNNEGCNWDDG
DCCSCNCEDSEFECGIVGFSCLDPASVCSGTSSSGAITGVYHDDDVTSNS
PGYEAGDSGEDDDIVDDDAVYDDGGSYGGDRDFSGSTADSDSAEIVGVQD
IADGSSGSSF
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mRNA from alignment at L-elsbetiae_contig4893:3769..5341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4893.12815.1 ID=mRNA_L-elsbetiae_contig4893.12815.1|Name=mRNA_L-elsbetiae_contig4893.12815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1573bp|location=Sequence derived from alignment at L-elsbetiae_contig4893:3769..5341- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCCACGACGCCCCCTCCCCAAAAGGTGATTGCTGTGTCTGTGAGTG
CGACGGCTACGGCTGTGGAACCATCGCGTTCGACTGCCTAGACCCGACCG
CCGGCACGGATTGCCCCACTCCAAACCCTGCCCTGAGCTCTACCGCCTAC
TCCGGCAACTCGGATAGTTCTACCGCCTACTCCGGCAACTCGGATAGTTC
TACCGCCTACTCCGGCTACTACGGTTCCGAATGCGTTTGGTGGGTGTGGC
GGGCGCCGGTGGTCGAAAGGCATCCGACTGTTAGAGTGACAGTGGCACGG
CCCAGCGTGTGGTGTATTGGTAATCCGACGGCGATGACCTCTTCCACGTA
AATATACGAAATGCCTTCTTGTGTATGTTTGTGGGAACAATCGTCCGATT
TTTGGGACTCCCAAACCACGATTCCCACTTTGAAATGCATGCATCTCGTT
TGCAACTAGTTGCCTACGGCGTGGTGACTCGTTGCTTAAGGCTTGCTTGC
TCGAGTGGCCTAATGCAACGCGTGTTGGCGCAACGTATAATTACTGCGTC
AGGTCCGGTGATGGCTACTGCGACCCTAGCCACAACAACGAGGGGTGCAA
CTGGGATGACGGTGAGAGCTGCGATGCTCAAAAGGTTGCTGCTTGTCGTT
AAGCGCCGCATCATTTTACGGAATGTGCTTGTGTTGCATAAGCTTTGTCT
GCGTTGGTCGAACAAACCAAGCTTTGTCTGCGTCGTTCGAATACACCCTC
TTTGCAGCTTGGTGGCTCGAGTGGTCGAAGGGGCGCTTATATCTCTGTTT
GTGTGACCGACGAATAATAGTCCAGCTAAAAGGCGGGCGGGGCGATGCGG
CGATTCTCAGTACGCTGTTCCCCCCCCCCCCCCCTCGAGCGATGCACAGA
CACGTTTGTTGCGGTGCTGATTGTTCCGCAGCAGTTGCCTGTCCCCCCGG
CTTAGCATGTATGCTCGTGTAGCCCCCCAATCAAGCGCTATCTCGAGGTA
CCACGAGATGAACGACCCGTCTCTCACGTGCCCAATCACTCCCCATCTCA
TGCCCCCTGTGAGAGGGGAACGCACGTCCTGCCTTGCCTCCGGCTCCTCC
ACCGAACGCATCCCTCATGACCTGGGCTCTAAAACTCGCGAGCTAAATGC
ACGCGCTTCTCTGATTGGTTGTCTTGCGCTCCCCGCTCCCTCACTCGCTC
GCTCGCTCTCCGACTCTTATGGCCCCACCCACCCACCGCAGGCGATTGCT
GCTCCTGCAACTGCGAGGACTCGGAGTTCGAGTGCGGAATCGTCGGTTTC
AGCTGCTTGGACCCGGCCTCCGTCTGCTCCGGGACGAGCAGCAGCGGCGC
GATCACCGGGGTCTACCACGACGACGACGTGACCTCCAACAGCCCCGGGT
ACGAGGCGGGAGACAGCGGCGAGGACGACGACATCGTTGACGACGACGCC
GTCTACGACGACGGTGGCTCCTACGGCGGCGACCGCGACTTCTCCGGCAG
CACGGCGGACTCGGACTCGGCGGAGATTGTCGGCGTGCAGGATATCGCGG
ACGGGTCGTCAGGGTCGTCCTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4893:3769..5341-

>mRNA_L-elsbetiae_contig4893.12815.1 ID=mRNA_L-elsbetiae_contig4893.12815.1|Name=mRNA_L-elsbetiae_contig4893.12815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1260bp|location=Sequence derived from alignment at L-elsbetiae_contig4893:3769..5341- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCCACGACGCCCCCTCCCCAAAAGGTGATTGCTGTGTCTGTGAGTG
CGACGGCTACGGCTGTGGAACCATCGCGTTCGACTGCCTAGACCCGACCG
CCGGCACGGATTGCCCCACTCCAAACCCTGCCCTGAGCTCTACCGCCTAC
TCCGGCAACTCGGATAGTTCTACCGCCTACTCCGGCAACTCGGATAGTTC
TACCGCCTACTCCGGCTACTACGGTTCCGAATGCGTTTGATGTGCCACGA
CGCCCCCTCCCCAAAAGGTGATTGCTGTGTCTGTGAGTGCGACGGCTACG
GCTGTGGAACCATCGCGTTCGACTGCCTAGACCCGACCGCCGGCACGGAT
TGCCCCACTCCAAACCCTGCCCTGAGCTCTACCGCCTACTCCGGCAACTC
GGATAGTTCTACCGCCTACTCCGGCAACTCGGATAGTTCTACCGCCTACT
CCGGCTACTACGGTTCCGAATGCGTTTGGTCCGGTGATGGCTACTGCGAC
CCTAGCCACAACAACGAGGGGTGCAACTGGGATGACGGTCCGGTGATGGC
TACTGCGACCCTAGCCACAACAACGAGGGGTGCAACTGGGATGACGGCGA
TTGCTGCTCCTGCAACTGCGAGGACTCGGAGTTCGAGTGCGGAATCGTCG
GTTTCAGCTGCTTGGACCCGGCCTCCGTCTGCTCCGGGACGAGCAGCAGC
GGCGCGATCACCGGGGTCTACCACGACGACGACGTGACCTCCAACAGCCC
CGGGTACGAGGCGGGAGACAGCGGCGAGGACGACGACATCGTTGACGACG
ACGCCGTCTACGACGACGGTGGCTCCTACGGCGGCGACCGCGACTTCTCC
GGCAGCACGGCGGACTCGGACTCGGCGGAGATTGTCGGCGTGCAGGATAT
CGCGGACGGGTCGTCAGGGTCGTCCTTCGCGATTGCTGCTCCTGCAACTG
CGAGGACTCGGAGTTCGAGTGCGGAATCGTCGGTTTCAGCTGCTTGGACC
CGGCCTCCGTCTGCTCCGGGACGAGCAGCAGCGGCGCGATCACCGGGGTC
TACCACGACGACGACGTGACCTCCAACAGCCCCGGGTACGAGGCGGGAGA
CAGCGGCGAGGACGACGACATCGTTGACGACGACGCCGTCTACGACGACG
GTGGCTCCTACGGCGGCGACCGCGACTTCTCCGGCAGCACGGCGGACTCG
GACTCGGCGGAGATTGTCGGCGTGCAGGATATCGCGGACGGGTCGTCAGG
GTCGTCCTTC
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