mRNA_L-elsbetiae_contig4893.12814.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4893.12814.1
Unique NamemRNA_L-elsbetiae_contig4893.12814.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4893.12814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4893contigL-elsbetiae_contig4893:384..630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size236
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4893.12814.1prot_L-elsbetiae_contig4893.12814.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4893 421..602 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816483.2472584-UTR-L-elsbetiae_contig4893:383..4201622816483.2472584-UTR-L-elsbetiae_contig4893:383..420Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4893 384..420 +
1691683592.2669492-UTR-L-elsbetiae_contig4893:383..4201691683592.2669492-UTR-L-elsbetiae_contig4893:383..420Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4893 384..420 +
1622816483.283723-UTR-L-elsbetiae_contig4893:602..6301622816483.283723-UTR-L-elsbetiae_contig4893:602..630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4893 603..630 +
1691683592.2941308-UTR-L-elsbetiae_contig4893:602..6301691683592.2941308-UTR-L-elsbetiae_contig4893:602..630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4893 603..630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816483.2609315-CDS-L-elsbetiae_contig4893:420..4371622816483.2609315-CDS-L-elsbetiae_contig4893:420..437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4893 421..437 +
1691683592.2760098-CDS-L-elsbetiae_contig4893:420..4371691683592.2760098-CDS-L-elsbetiae_contig4893:420..437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4893 421..437 +
1622816483.2711935-CDS-L-elsbetiae_contig4893:448..6021622816483.2711935-CDS-L-elsbetiae_contig4893:448..602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4893 449..602 +
1691683592.2845216-CDS-L-elsbetiae_contig4893:448..6021691683592.2845216-CDS-L-elsbetiae_contig4893:448..602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4893 449..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4893.12814.1

>prot_L-elsbetiae_contig4893.12814.1 ID=prot_L-elsbetiae_contig4893.12814.1|Name=mRNA_L-elsbetiae_contig4893.12814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
MHSVLIRCAQTARPHTCASRDLTLMPISRDCFTARTLTQHQTQLNLIPER
KGGEGH*
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mRNA from alignment at L-elsbetiae_contig4893:384..630+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4893.12814.1 ID=mRNA_L-elsbetiae_contig4893.12814.1|Name=mRNA_L-elsbetiae_contig4893.12814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=247bp|location=Sequence derived from alignment at L-elsbetiae_contig4893:384..630+ (Laminarionema elsbetiae ELsaHSoW15)
CAGTAGCACAGAGTAGAACAGATAGTCTACATCACAAATGCACTCCGTCT
TGATGCAATGTTGAGACGCTGCGCACAGACAGCGAGACCTCACACATGCG
CATCGCGAGACCTCACACTCATGCCGATTTCCCGTGACTGCTTCACCGCT
CGCACTCTGACACAACACCAGACACAGCTTAACCTTATCCCCGAACGCAA
AGGCGGCGAAGGGCACTAGCTTCTAGCTCAGCTCTAGTGAGGCGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4893:384..630+

>mRNA_L-elsbetiae_contig4893.12814.1 ID=mRNA_L-elsbetiae_contig4893.12814.1|Name=mRNA_L-elsbetiae_contig4893.12814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig4893:384..630+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACTCCGTCTTGATATGCACTCCGTCTTGATACGCTGCGCACAGACA
GCGAGACCTCACACATGCGCATCGCGAGACCTCACACTCATGCCGATTTC
CCGTGACTGCTTCACCGCTCGCACTCTGACACAACACCAGACACAGCTTA
ACCTTATCCCCGAACGCAAAGGCGGCGAAGGGCACTAGACGCTGCGCACA
GACAGCGAGACCTCACACATGCGCATCGCGAGACCTCACACTCATGCCGA
TTTCCCGTGACTGCTTCACCGCTCGCACTCTGACACAACACCAGACACAG
CTTAACCTTATCCCCGAACGCAAAGGCGGCGAAGGGCACTAG
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