mRNA_L-elsbetiae_contig4887.12805.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4887.12805.1
Unique NamemRNA_L-elsbetiae_contig4887.12805.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig4887.12805.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.360e-50
Identity = 101/163 (61.96%), Postives = 127/163 (77.91%), Query Frame = 2 
Query:   62 LPASKLPLSQSQAQTLGLVAAGKEGKARAKTLVTAVKDRCLKTLAGLQACKLPSACADPILFNTPVNTTVATDYEHIITNKMDVDTVSRTLKLNRYPTVEAFFRDLLLVYDNAIRYFERGGAFKSNHVYEAAKALQTVALREKRQVVNGFEKQVSALLVEASR 550
            L AS+ PLSQ+QAQ LGLVAA KEGKA+AK LV A+KDRCLK +  +Q  KLP++CA   LF+ PVNT+VATDYE I++ KMDV+TV + LK NRYPTVE  FRDL LVYDNAIRY+++GGA K+  +YEAAKAL+TVA  EKR ++  F ++V  +  EAS+
Sbjct: 1229 LTASEFPLSQAQAQALGLVAASKEGKAKAKELVGAIKDRCLKKVKEIQEYKLPTSCASSHLFDLPVNTSVATDYEGIVSTKMDVNTVVKKLKNNRYPTVECLFRDLTLVYDNAIRYYQQGGAHKNILIYEAAKALKTVAEYEKRIILRVFCEKVFMMQTEASQ 1391
[Close]
BLAST of mRNA_L-elsbetiae_contig4887.12805.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 2.670e-44
Identity = 88/133 (66.17%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:   62 LPASKLPLSQSQAQTLGLVAAGKEGKARAKTLVTAVKDRCLKTLAGLQACKLPSACADPILFNTPVNTTVATDYEHIITNKMDVDTVSRTLKLNRYPTVEAFFRDLLLVYDNAIRYFERGGAFKSNHVYEAAK 460
            L AS+ PLSQ+QAQ LGLVAA KEGKA+AK LV A+KDRCLK +  +Q  KLP++CA   LF+ PVNT+VATDYE I++ KMDV+TV + LK NRYPTVE+ FRDL LVYDNAIRY+++GGA K+  +YEAAK
Sbjct:  762 LTASEFPLSQAQAQALGLVAASKEGKAKAKELVGAIKDRCLKKVKEIQVYKLPTSCASSHLFDLPVNTSVATDYEGIVSTKMDVNTVVKRLKNNRYPTVESLFRDLTLVYDNAIRYYQQGGAHKNILIYEAAK 894
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4887.12805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNI2_9PHAE1.360e-5061.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWI3_ECTSI2.670e-4466.17Global transcription factor group n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4887contigL-elsbetiae_contig4887:5610..9658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBromodomain protein
Ec32 orthologEc-26_006510.1
Exons4
Model size714
Cds size684
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4887.12805.1prot_L-elsbetiae_contig4887.12805.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4887 5638..9658 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816482.3470104-UTR-L-elsbetiae_contig4887:5609..56371622816482.3470104-UTR-L-elsbetiae_contig4887:5609..5637Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4887 5610..5637 +
1691683591.6240556-UTR-L-elsbetiae_contig4887:5609..56371691683591.6240556-UTR-L-elsbetiae_contig4887:5609..5637Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4887 5610..5637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816482.3592336-CDS-L-elsbetiae_contig4887:5637..57861622816482.3592336-CDS-L-elsbetiae_contig4887:5637..5786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4887 5638..5786 +
1691683591.6334414-CDS-L-elsbetiae_contig4887:5637..57861691683591.6334414-CDS-L-elsbetiae_contig4887:5637..5786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4887 5638..5786 +
1622816482.370509-CDS-L-elsbetiae_contig4887:7041..71351622816482.370509-CDS-L-elsbetiae_contig4887:7041..7135Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4887 7042..7135 +
1691683591.6428459-CDS-L-elsbetiae_contig4887:7041..71351691683591.6428459-CDS-L-elsbetiae_contig4887:7041..7135Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4887 7042..7135 +
1622816482.3818889-CDS-L-elsbetiae_contig4887:7967..81561622816482.3818889-CDS-L-elsbetiae_contig4887:7967..8156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4887 7968..8156 +
1691683591.653062-CDS-L-elsbetiae_contig4887:7967..81561691683591.653062-CDS-L-elsbetiae_contig4887:7967..8156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4887 7968..8156 +
1622816482.3931808-CDS-L-elsbetiae_contig4887:9406..96581622816482.3931808-CDS-L-elsbetiae_contig4887:9406..9658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4887 9407..9658 +
1691683591.663053-CDS-L-elsbetiae_contig4887:9406..96581691683591.663053-CDS-L-elsbetiae_contig4887:9406..9658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4887 9407..9658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4887.12805.1

>prot_L-elsbetiae_contig4887.12805.1 ID=prot_L-elsbetiae_contig4887.12805.1|Name=mRNA_L-elsbetiae_contig4887.12805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=228bp
MIETPPPTKPPLPASKLPLSQSQAQTLGLVAAGKEGKARAKTLVTAVKDR
CLKTLAGLQACKLPSACADPILFNTPVNTTVATDYEHIITNKMDVDTVSR
TLKLNRYPTVEAFFRDLLLVYDNAIRYFERGGAFKSNHVYEAAKALQTVA
LREKRQVVNGFEKQVSALLVEASRPPPFVIPLKKEAKEERDRKAAAVAAA
AAAAAAAAVAAAEAVEAERERKREEVAR
back to top

mRNA from alignment at L-elsbetiae_contig4887:5610..9658+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4887.12805.1 ID=mRNA_L-elsbetiae_contig4887.12805.1|Name=mRNA_L-elsbetiae_contig4887.12805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4049bp|location=Sequence derived from alignment at L-elsbetiae_contig4887:5610..9658+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCGGTGGCGGTGGCGGTGGCGGTGGAATGATAGAGACACCGCCGCCCA
CCAAGCCGCCGTTGCCGGCCAGCAAGCTGCCGCTGTCGCAGTCCCAGGCG
CAGACTCTGGGTCTCGTGGCTGCGGGGAAGGAGGGGAAGGCCAGGGCGAA
GACACTGGTAACTGCGGTGAAGGACAGGTGAGTCGCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCGGC
GGCGGGGAAGGGGGGGAAGGCCAGGGCGAAGACACTGGTAACTGCGGTGA
AGGACAGGTGGGTCCCCCCCCCCCCCCCCCCCCCCGGCCCACCCCCGCGC
CTTGCCCTCGCTAGTTCCGAAGTTGCGCTTGTGGCCTGCGTTCGCTCGAT
GGCGATGTCGGGGATCCTCGTCCAGTATCCTTTCGCGGGTTTTACTGTGG
AAGAAATCGGATGTATGAGACAAAAGCATTGAAACGGCTGATGGGAGGGA
GGTCGGTTTGGGGTTACGGATCCTCTTTTAATAAGAAGTTTGTGGATTTA
ATAGAAAGGTTATTATTTATTCATGGAATGACTTTTTTAAGATTAGCTAT
TAAAAAACTTTCAGACGCCGAAAAATTAGTCTTTCTGCATGCGGATGAAG
AATTAAATGGTAGGGTTATGGTTAGGGTTAGGGTTGCGGGACCCCTGTCT
ATTATTTATTACCAAGTAAAATTTCGATTATTTCCTACATACATGTGTAC
AGTAGTAGATAGGAATTCTTGGGGAAGGCGTTCCGGTTCGGTCCTCCTCT
GCTCGTCACGCGCCAGCTGGAGTGGAGGCTCTCGTGTATATGTAGCACGC
ATGCCACAAACGCAGGCTAGATATAGTTCAGCCTCGGCTCTTTGTGGCTC
GTACAGGGACGTGAGGGTCTGTGCGCGCATGCCACACGCAGGCTAGAAAT
ATATATTTACCTACCAGTCTTGGCTTTTTGTGAGGCTCGTACGGGCACGT
ACGGGTCTGTCTCGCTTTTGTGGCGCTCACCCGCGCGGAGGGGGGGCGTT
TTATCGTATCTAGATGCAGTATTTGAGAATCGGTTCCGTGACGTACATGT
ATACTTCGAAGTACACATGGACATAATATTTCAACTCCAACGAGTGCGTT
TGTTTTGTTCGACGCGCACAGGTGTTTGGTGCGGTGGTGACTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTCTTGCGCGCCTCTTTTGCCTTAAAACATT
TGCCGGCCTTCCAGCGTGCCAGCCGCCCTCGGCTTGTTCGGACCCCNNNN
NNNNNNTTGTTTTTTGTGTTGTGTTGTTGTTTGTTGTGGGGTTTTTTTGT
TTTGTTTTTTGCGCCTGGTTGTTTGTTGGGGTGGTTTTTTTTTTTTTTTT
TTTTTTTCTGTTTGTATCCTGGCGCGCCTCAGGTGCCTCAAGACATTGGC
AGGCCTTCAAGCGTGCAAGCTGCCGTCGGCTTGTGCGGACCCCATCCTCT
TCAACACGCCAGTGAACACAACCGTGGTGAGCGGGCGATGATAAACAAAC
GACGTGTCTGGTTTGATGCGTTCGTATGTATGATGCAGGTGTTGGGGGTG
CCCCGTAGTATCGTTATGCCCCCCCCCGCCCGTCCGGTTTGCGCGCCGCT
GCCCTGCTGCGGGAAATCATGCTCGAGTCGAGCACACGCTGGCGTGTTGT
GCAGCGGTGAAAGGCCTGCTTTGTTCCGATCGGAGCCTCGTATTCGCTCT
CCGCGTCCTTGCTTTTCTGTCGCCAGGTTCACACCTGTCTGCATCCCAGA
TCCAACTAATTCTGACATTATATTGAGCCGCGGAGCGGCGAAGCAGCGAC
CTGCTTTTTGTCCCTTCATCCCCCCCAGGAGGAAAAAAAAGGCTCTAAAC
ATCGGCCAAAGTTCCTCACAAGAGTACGGCATAAGAGAGTGCGTCGCCTG
TCGTTTCTGGAGCTCACACGAATGACCGTGTTTTTCACATTGGTGCGGAC
TGACTATTTATTAGCGGCCCTTGTCCTGCTGTTTTGTCATGGAGGCGCTC
GATCAAAGCACTTACATACATGCACATATATGTGTGTACAGCAATGCTCA
TATTTTATTCGAAGATTCCTTGAATCCAAAAGCGTTTTATGCTTGCAATC
TTTCAAAAGCAAAACTCTCTCAAGTTTTTAAAAGAAAAATATTAAACAAC
AATTTCATTGATGATTAGACTATTGGTTTATTATATTTTTTAAGCCTTTT
ATCAACATAGTGTGTGGGTATGTGTGTGTGTGACCTTAATCCGGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGACCTTAATCCGATCGCTGTTTTTC
ATCCACAGGCGACGGACTACGAGCACATCATCACCAACAAGATGGACGTG
GACACCGTGAGCAGAACGCTCAAGCTCAACAGGTACCCCACCGTGGAGGC
CTTCTTCCGCGACCTTCTGCTCGTTTACGACAACGCCATCCGCTACTTCG
AGCGAGGGGGGGCCTTCAAGAGCAACCATGTCTACGAAGCTGCGAAGGTG
TGTACGTACGTGTACGTAGGCTTTTCCTGCAATAGAGCCCCCAGTTCTCA
ACAAGAGCTTTGAGGGGGCAGCGCGCGGGGGGGTATGGGGCATTTATCTA
GGAAATAGAGTGAAAAATCCCCCACGGGGCCACTTTTTCAGATTGGGAGC
CCTGCTGCAGGGAAGCCTGTATGTATATACAGCAGGTATGTGGTTTGTCA
TTGTCGCCTTTTTTACTTTTCGCTCCTCATTCCTCGCCCACATGTAGTAC
CATGTACGTACCTATATATTTTATATATTCTTCTGACTACGAGTATGTGC
GTGCAACATTTCTCTGCGCCAAGTTTTCCTCTTGCCGTCCGCCGTTCGGG
TTCTCCCCGTACCGCCGGCCCGGGGGGTGCGCAAGTGGTGTCCGAAAACC
GAGCTGAGCACACCGAAGAACTGCCGTGTTTGTTCGATGATGCGGGAGCG
GTTTTTGCCCGATTTCGCGTGTGATGAAAAAGGAGAATATAGAGGTTCAA
GAAAAAAAGAAAAGAAAAAAAAAGGAGGTCGAACCGAGGCACAAACGACG
TTGGTTGTTGTTGTTGTTGTTGTTGTTGTTTCTTCACATTAAAAACCATT
CCGATCTCTCCACCTCCCTGTGTCCGTACAATCAACACTTGATGCGGTCA
ATTCCCGTGGTCACAGGCTAACTTGTACCTAAAAAAAGGTATACGAAAAT
AGAATGGATCCGAAGGGTCAGCAGAGCGATACAAATCAAAGACAAATAGT
GTGGAACCCCGCTCCCCTCTACACGCTATGCGAGGTGAAACCAAAACTGG
ACAAGCCAACATCGCCAATCGGGGGTATACACCCCCTGGTTCTATCTAGG
GTATTGTTGAGTATTATTTATCATTCAGCAGCATTTATGCCGAGATCGCC
GGCAAGAGAGTCCATCCAGCCCCCTATTTCGTCCTCTTGGTGTGTAGATC
TATCTCCTCGCGCGGTCTCATCTCATCCCACCTCATCTCATATTTGTATT
TTCCAGGCGACAGACGGGCTACCCAATTACAATGGATACATCGTGTCTAC
CATATATATGTATGTAAAAACGCAAAAATGTACATAACCGTTTTATTTTT
AATTTTTCCCACCTGCTGTGTGTTTTCTTTTCGTGTTGGAATAGATATAG
GAAGCGTAGACCCACATAACTTTTGTACCTCATGTATTGTCTTCGTCCCG
TGTGTGTGTGTGTATGTGTGTGTCCGTGTGGCCTATCCTGTCCGTAGGCC
CTCCAGACCGTGGCTCTGCGCGAAAAGCGGCAGGTCGTCAACGGGTTCGA
AAAGCAGGTGTCCGCGCTTCTCGTCGAGGCCTCCCGGCCCCCTCCATTTG
TCATCCCGCTGAAAAAGGAGGCCAAAGAAGAGCGGGACCGGAAGGCGGCG
GCGGTGGCGGCGGCTGCGGCTGCGGCGGCTGCGGCGGCGGTGGCTGCGGC
GGAGGCGGTGGAGGCGGAGCGTGAACGGAAAAGAGAGGAGGTCGCGCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig4887:5610..9658+

>mRNA_L-elsbetiae_contig4887.12805.1 ID=mRNA_L-elsbetiae_contig4887.12805.1|Name=mRNA_L-elsbetiae_contig4887.12805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1368bp|location=Sequence derived from alignment at L-elsbetiae_contig4887:5610..9658+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATAGAGACACCGCCGCCCACCAAGCCGCCGTTGCCGGCCAGCAAGCT
GCCGCTGTCGCAGTCCCAGGCGCAGACTCTGGGTCTCGTGGCTGCGGGGA
AGGAGGGGAAGGCCAGGGCGAAGACACTGGTAACTGCGGTGAAGGACAGA
TGATAGAGACACCGCCGCCCACCAAGCCGCCGTTGCCGGCCAGCAAGCTG
CCGCTGTCGCAGTCCCAGGCGCAGACTCTGGGTCTCGTGGCTGCGGGGAA
GGAGGGGAAGGCCAGGGCGAAGACACTGGTAACTGCGGTGAAGGACAGGT
GCCTCAAGACATTGGCAGGCCTTCAAGCGTGCAAGCTGCCGTCGGCTTGT
GCGGACCCCATCCTCTTCAACACGCCAGTGAACACAACCGTGGTGCCTCA
AGACATTGGCAGGCCTTCAAGCGTGCAAGCTGCCGTCGGCTTGTGCGGAC
CCCATCCTCTTCAACACGCCAGTGAACACAACCGTGGCGACGGACTACGA
GCACATCATCACCAACAAGATGGACGTGGACACCGTGAGCAGAACGCTCA
AGCTCAACAGGTACCCCACCGTGGAGGCCTTCTTCCGCGACCTTCTGCTC
GTTTACGACAACGCCATCCGCTACTTCGAGCGAGGGGGGGCCTTCAAGAG
CAACCATGTCTACGAAGCTGCGAAGGCGACGGACTACGAGCACATCATCA
CCAACAAGATGGACGTGGACACCGTGAGCAGAACGCTCAAGCTCAACAGG
TACCCCACCGTGGAGGCCTTCTTCCGCGACCTTCTGCTCGTTTACGACAA
CGCCATCCGCTACTTCGAGCGAGGGGGGGCCTTCAAGAGCAACCATGTCT
ACGAAGCTGCGAAGGCCCTCCAGACCGTGGCTCTGCGCGAAAAGCGGCAG
GTCGTCAACGGGTTCGAAAAGCAGGTGTCCGCGCTTCTCGTCGAGGCCTC
CCGGCCCCCTCCATTTGTCATCCCGCTGAAAAAGGAGGCCAAAGAAGAGC
GGGACCGGAAGGCGGCGGCGGTGGCGGCGGCTGCGGCTGCGGCGGCTGCG
GCGGCGGTGGCTGCGGCGGAGGCGGTGGAGGCGGAGCGTGAACGGAAAAG
AGAGGAGGTCGCGCGGGCCCTCCAGACCGTGGCTCTGCGCGAAAAGCGGC
AGGTCGTCAACGGGTTCGAAAAGCAGGTGTCCGCGCTTCTCGTCGAGGCC
TCCCGGCCCCCTCCATTTGTCATCCCGCTGAAAAAGGAGGCCAAAGAAGA
GCGGGACCGGAAGGCGGCGGCGGTGGCGGCGGCTGCGGCTGCGGCGGCTG
CGGCGGCGGTGGCTGCGGCGGAGGCGGTGGAGGCGGAGCGTGAACGGAAA
AGAGAGGAGGTCGCGCGG
back to top