mRNA_L-elsbetiae_contig4884.12802.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4884.12802.1
Unique NamemRNA_L-elsbetiae_contig4884.12802.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4884.12802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4884contigL-elsbetiae_contig4884:11340..11648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4884.12802.1prot_L-elsbetiae_contig4884.12802.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4884 11434..11640 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816482.160804-UTR-L-elsbetiae_contig4884:11339..114331622816482.160804-UTR-L-elsbetiae_contig4884:11339..11433Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4884 11340..11433 +
1691683591.541444-UTR-L-elsbetiae_contig4884:11339..114331691683591.541444-UTR-L-elsbetiae_contig4884:11339..11433Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4884 11340..11433 +
1622816482.1854353-UTR-L-elsbetiae_contig4884:11640..116481622816482.1854353-UTR-L-elsbetiae_contig4884:11640..11648Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4884 11641..11648 +
1691683591.5599778-UTR-L-elsbetiae_contig4884:11640..116481691683591.5599778-UTR-L-elsbetiae_contig4884:11640..11648Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4884 11641..11648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816482.1743543-CDS-L-elsbetiae_contig4884:11433..116401622816482.1743543-CDS-L-elsbetiae_contig4884:11433..11640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4884 11434..11640 +
1691683591.5509973-CDS-L-elsbetiae_contig4884:11433..116401691683591.5509973-CDS-L-elsbetiae_contig4884:11433..11640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4884 11434..11640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4884.12802.1

>prot_L-elsbetiae_contig4884.12802.1 ID=prot_L-elsbetiae_contig4884.12802.1|Name=mRNA_L-elsbetiae_contig4884.12802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=69bp
MEEKGIALDVITYSSAIKACGEGGQWQLALDLLLEMKKKGIAPNAIIYNS
AIKACGERGSKLSHYSER*
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mRNA from alignment at L-elsbetiae_contig4884:11340..11648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4884.12802.1 ID=mRNA_L-elsbetiae_contig4884.12802.1|Name=mRNA_L-elsbetiae_contig4884.12802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=309bp|location=Sequence derived from alignment at L-elsbetiae_contig4884:11340..11648+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTATTGCACCTAACGTCATAACCTGCAGCTCCGCTATCGAGGCGTGCG
GGGGCGGAGGACAGTGGGAGCTGGCTATCGAACTTCTCCGAGAGATGGAG
GAGAAGGGCATTGCACTTGACGTCATAACTTACAGCTCTGCCATCAAGGC
GTGTGGGGAAGGAGGACAGTGGCAGCTGGCTCTCGACCTACTCCTAGAGA
TGAAGAAGAAGGGTATTGCACCTAACGCCATAATTTACAACTCCGCTATA
AAAGCGTGTGGGGAAAGAGGTAGTAAGCTATCGCACTACTCCGAGAGATG
AAATAACAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4884:11340..11648+

>mRNA_L-elsbetiae_contig4884.12802.1 ID=mRNA_L-elsbetiae_contig4884.12802.1|Name=mRNA_L-elsbetiae_contig4884.12802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig4884:11340..11648+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGAGAAGGGCATTGCACTTGACGTCATAACTTACAGCTCTGCCAT
CAAGGCGTGTGGGGAAGGAGGACAGTGGCAGCTGGCTCTCGACCTACTCC
TAGAGATGAAGAAGAAGGGTATTGCACCTAACGCCATAATTTACAACTCC
GCTATAAAAGCGTGTGGGGAAAGAGGTAGTAAGCTATCGCACTACTCCGA
GAGATGAATGGAGGAGAAGGGCATTGCACTTGACGTCATAACTTACAGCT
CTGCCATCAAGGCGTGTGGGGAAGGAGGACAGTGGCAGCTGGCTCTCGAC
CTACTCCTAGAGATGAAGAAGAAGGGTATTGCACCTAACGCCATAATTTA
CAACTCCGCTATAAAAGCGTGTGGGGAAAGAGGTAGTAAGCTATCGCACT
ACTCCGAGAGATGA
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