mRNA_L-elsbetiae_contig4879.12796.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4879.12796.1
Unique NamemRNA_L-elsbetiae_contig4879.12796.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig4879.12796.1 vs. uniprot
Match: D8LD08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD08_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.150e-11
Identity = 34/50 (68.00%), Postives = 36/50 (72.00%), Query Frame = -2 
Query:    6 DWSKRELSSDEKTELEGVFICRGCRSWPFAKASVEDTVHMLPVKATVEGD 155
            DWS R+LS DEKTELEG+   R      FA ASVEDTVH LPVKAT EGD
Sbjct:    4 DWSNRDLSRDEKTELEGIANMRRLSILVFANASVEDTVHTLPVKATEEGD 53
[Close]
BLAST of mRNA_L-elsbetiae_contig4879.12796.1 vs. uniprot
Match: D7FHJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ0_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 6.290e-7
Identity = 27/50 (54.00%), Postives = 31/50 (62.00%), Query Frame = -2 
Query:    6 DWSKRELSSDEKTELEGVFICRGCRSWPFAKASVEDTVHMLPVKATVEGD 155
            DWSKRELSS+E+ +LE V   R      F   SV D  H LPV+AT EGD
Sbjct:  181 DWSKRELSSEEREQLESVASMRRLSKLAFVNTSVADIFHALPVRATREGD 230
[Close]
BLAST of mRNA_L-elsbetiae_contig4879.12796.1 vs. uniprot
Match: D7G514_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G514_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 6.440e-5
Identity = 25/40 (62.50%), Postives = 26/40 (65.00%), Query Frame = -2 
Query:    6 EKTELEGVFICRGCRSWPFAKASVEDTVHMLPVKATVEGD 125
            EK EL GV   R      FA AS+EDTVH LPVKAT EGD
Sbjct:   27 EKAELGGVATMRRLSRLAFANASMEDTVHALPVKATAEGD 66
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4879.12796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LD08_ECTSI2.150e-1168.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHJ0_ECTSI6.290e-754.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G514_ECTSI6.440e-562.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4879contigL-elsbetiae_contig4879:4161..4847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4879.12796.1prot_L-elsbetiae_contig4879.12796.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4879 4197..4841 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816481.3024197-UTR-L-elsbetiae_contig4879:4160..41961622816481.3024197-UTR-L-elsbetiae_contig4879:4160..4196Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4879 4161..4196 +
1691683590.860472-UTR-L-elsbetiae_contig4879:4160..41961691683590.860472-UTR-L-elsbetiae_contig4879:4160..4196Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4879 4161..4196 +
1622816481.3428478-UTR-L-elsbetiae_contig4879:4841..48471622816481.3428478-UTR-L-elsbetiae_contig4879:4841..4847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4879 4842..4847 +
1691683590.8990238-UTR-L-elsbetiae_contig4879:4841..48471691683590.8990238-UTR-L-elsbetiae_contig4879:4841..4847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4879 4842..4847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816481.3193994-CDS-L-elsbetiae_contig4879:4196..43491622816481.3193994-CDS-L-elsbetiae_contig4879:4196..4349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4879 4197..4349 +
1691683590.8731923-CDS-L-elsbetiae_contig4879:4196..43491691683590.8731923-CDS-L-elsbetiae_contig4879:4196..4349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4879 4197..4349 +
1622816481.3318062-CDS-L-elsbetiae_contig4879:4715..48411622816481.3318062-CDS-L-elsbetiae_contig4879:4715..4841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4879 4716..4841 +
1691683590.8844588-CDS-L-elsbetiae_contig4879:4715..48411691683590.8844588-CDS-L-elsbetiae_contig4879:4715..4841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4879 4716..4841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4879.12796.1

>prot_L-elsbetiae_contig4879.12796.1 ID=prot_L-elsbetiae_contig4879.12796.1|Name=mRNA_L-elsbetiae_contig4879.12796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MWTVSSTDALAKGQLRQPLHMKTPSSSVFSSLLSSRLDQSPSFSGHLDPQ
QAPDIANRDTDGRALRAAVSYSGEETVKFLRQRPEAFEAACR*
back to top

mRNA from alignment at L-elsbetiae_contig4879:4161..4847+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4879.12796.1 ID=mRNA_L-elsbetiae_contig4879.12796.1|Name=mRNA_L-elsbetiae_contig4879.12796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=687bp|location=Sequence derived from alignment at L-elsbetiae_contig4879:4161..4847+ (Laminarionema elsbetiae ELsaHSoW15)
CCGACGTCTCCCTCTACCGTGGCTTTCACCGGTAGCATGTGGACAGTGTC
CTCCACCGATGCCTTGGCGAAAGGCCAGCTTCGACAACCTCTGCATATGA
AGACACCTTCGAGCTCGGTCTTTTCGTCGCTACTAAGCTCTCGCTTGGAC
CAATCTCCCTCCTTTTCTGGTCACCTGGACCCGCAGCAGGTACTGCACGA
ACGAAGCTCATACTAGAGTGTGCATGGTGATTAGCGACAATAGGTACTTC
CGAAGGTCATTGTCTAGTGTCACCAATTCCTTGCCGTTTTCGTCGTCATT
AACGCATCGACACTCCAGGAGCTGCCACTGATCGATCGTAATGTCGCAGC
CGGTGAGACTGTACATACCCTATGGTGGCGCTCTATCCAGGCCCTGAGTC
CGACTGCCACGGGAACACTTGGTGCATAGCCGTCCCTACCCCTGACGCCG
CTACCACCAAAGATCAAAGGGCATGCTCACGCACACACGCATGCACGACA
CGAATCAATTCTTCATGCTGCTTGAATTTCACGTTGGTTTCCCGTTTCCA
GGAAGGCCCCAGACATAGCCAATCGAGACACCGACGGTCGAGCCCTGCGC
GCGGCAGTCTCCTACAGCGGCGAGGAGACAGTCAAATTCCTGCGGCAGCG
ACCGGAGGCGTTCGAGGCGGCCTGCAGATGAAAACCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig4879:4161..4847+

>mRNA_L-elsbetiae_contig4879.12796.1 ID=mRNA_L-elsbetiae_contig4879.12796.1|Name=mRNA_L-elsbetiae_contig4879.12796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig4879:4161..4847+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGACAGTGTCCTCCACCGATGCCTTGGCGAAAGGCCAGCTTCGACA
ACCTCTGCATATGAAGACACCTTCGAGCTCGGTCTTTTCGTCGCTACTAA
GCTCTCGCTTGGACCAATCTCCCTCCTTTTCTGGTCACCTGGACCCGCAG
CAGATGTGGACAGTGTCCTCCACCGATGCCTTGGCGAAAGGCCAGCTTCG
ACAACCTCTGCATATGAAGACACCTTCGAGCTCGGTCTTTTCGTCGCTAC
TAAGCTCTCGCTTGGACCAATCTCCCTCCTTTTCTGGTCACCTGGACCCG
CAGCAGGCCCCAGACATAGCCAATCGAGACACCGACGGTCGAGCCCTGCG
CGCGGCAGTCTCCTACAGCGGCGAGGAGACAGTCAAATTCCTGCGGCAGC
GACCGGAGGCGTTCGAGGCGGCCTGCAGATGAGCCCCAGACATAGCCAAT
CGAGACACCGACGGTCGAGCCCTGCGCGCGGCAGTCTCCTACAGCGGCGA
GGAGACAGTCAAATTCCTGCGGCAGCGACCGGAGGCGTTCGAGGCGGCCT
GCAGATGA
back to top