mRNA_L-elsbetiae_contig4875.12789.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4875.12789.1
Unique NamemRNA_L-elsbetiae_contig4875.12789.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4875.12789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4875contigL-elsbetiae_contig4875:5246..6266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size434
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816480.7490246-CDS-L-elsbetiae_contig4875:5245..53771622816480.7490246-CDS-L-elsbetiae_contig4875:5245..5377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4875 5246..5377 -
1691683590.5178022-CDS-L-elsbetiae_contig4875:5245..53771691683590.5178022-CDS-L-elsbetiae_contig4875:5245..5377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4875 5246..5377 -
1622816480.7598326-CDS-L-elsbetiae_contig4875:5966..62661622816480.7598326-CDS-L-elsbetiae_contig4875:5966..6266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4875 5967..6266 -
1691683590.52905-CDS-L-elsbetiae_contig4875:5966..62661691683590.52905-CDS-L-elsbetiae_contig4875:5966..6266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4875 5967..6266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4875.12789.1prot_L-elsbetiae_contig4875.12789.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4875 5246..6266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4875.12789.1

>prot_L-elsbetiae_contig4875.12789.1 ID=prot_L-elsbetiae_contig4875.12789.1|Name=mRNA_L-elsbetiae_contig4875.12789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
GSASGGGASGSAAVLAGPREVRPAAEGSEPASGKAEPGSVDGSRKQPLPD
ESEEAMPRGEPEPASVAAADEAPVGGHGGEERWAAGDVIRGAGARENAGE
EAGGAPVKQLGAAVAPLKTPAGSDAPAAEDDAARAGGLPLALAG
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mRNA from alignment at L-elsbetiae_contig4875:5246..6266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4875.12789.1 ID=mRNA_L-elsbetiae_contig4875.12789.1|Name=mRNA_L-elsbetiae_contig4875.12789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1021bp|location=Sequence derived from alignment at L-elsbetiae_contig4875:5246..6266- (Laminarionema elsbetiae ELsaHSoW15)
GGCAGCGCCTCGGGGGGGGGGGCGTCAGGTTCGGCGGCTGTCTTGGCGGG
GCCCCGCGAGGTGCGGCCCGCCGCGGAGGGCAGCGAACCCGCGTCGGGGA
AAGCGGAGCCCGGTTCGGTGGACGGCTCACGCAAACAACCGCTCCCCGAT
GAGAGCGAGGAGGCGATGCCGCGTGGTGAGCCGGAGCCTGCTTCTGTGGC
CGCCGCGGACGAGGCGCCTGTCGGGGGGCACGGCGGAGAGGAACGGTGGG
CGGCAGGCGACGTCATTCGAGGCGCTGGTGCCCGAGAAAATGCGGGCGAG
GTGAGTGAGCCTGTGACGGCATTTGCCACTGTTTGTTGCTGTTGTTGTTG
TTGTTGTTGTTGTTTCGCGCCAAGCTCATCTCTATTTTTTGTCTCGCGGG
CGGGGAATCGCTGGAGCCGGGAACAAGGTAGGCTTTTGACGCAAACCGTC
CAAAACAACTGTTCAGCTTGTTGCGCGGTTGATCCCAGTTGTGTAGATGA
TGCCATTTTCACTCTCATGCCTTCCGCATGTACAAATGTACCGTGTACCT
TGTCACGTCTGCCGCCCCTGTGTTTCCATGTGTGGTTCGACAGAACAGCA
AAAGGTAGATGTACCCGAAAGCCACGAAATCGCCAAGTACAAACACTAAC
GGCCTTCGTGTTGATGATCCCTCAGAGGGCTGCGTGATAGTATATATGTA
CGTACCCGAAGAATGAGCGACCCATTTTGGTTTTCTGGTTTTCGTTTTGG
TCTCGTTTCGTTTGGGAAACAAAAACAATACAATAGCGCCAGCCTTCGTT
CACCGCGCCCGTCTCCTGGCCTTGCTCTCGCGTATCTATCTATCTATCTA
TCTATCGATCGCCCCTACGACCACGCGCGCTTCCCACAGGAAGCGGGTGG
GGCTCCCGTCAAACAGCTCGGTGCCGCGGTCGCTCCGCTCAAGACGCCGG
CCGGCTCCGACGCTCCGGCGGCCGAGGACGACGCGGCGAGGGCGGGCGGC
CTGCCGCTTGCTCTTGCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4875:5246..6266-

>mRNA_L-elsbetiae_contig4875.12789.1 ID=mRNA_L-elsbetiae_contig4875.12789.1|Name=mRNA_L-elsbetiae_contig4875.12789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig4875:5246..6266- (Laminarionema elsbetiae ELsaHSoW15)
GGCAGCGCCTCGGGGGGGGGGGCGTCAGGTTCGGCGGCTGTCTTGGCGGG
GCCCCGCGAGGTGCGGCCCGCCGCGGAGGGCAGCGAACCCGCGTCGGGGA
AAGCGGAGCCCGGTTCGGTGGACGGCTCACGCAAACAACCGCTCCCCGAT
GAGAGCGAGGAGGCGATGCCGCGTGGTGAGCCGGAGCCTGCTTCTGTGGC
CGCCGCGGACGAGGCGCCTGTCGGGGGGCACGGCGGAGAGGAACGGTGGG
CGGCAGGCGACGTCATTCGAGGCGCTGGTGCCCGAGAAAATGCGGGCGAG
GGCAGCGCCTCGGGGGGGGGGGCGTCAGGTTCGGCGGCTGTCTTGGCGGG
GCCCCGCGAGGTGCGGCCCGCCGCGGAGGGCAGCGAACCCGCGTCGGGGA
AAGCGGAGCCCGGTTCGGTGGACGGCTCACGCAAACAACCGCTCCCCGAT
GAGAGCGAGGAGGCGATGCCGCGTGGTGAGCCGGAGCCTGCTTCTGTGGC
CGCCGCGGACGAGGCGCCTGTCGGGGGGCACGGCGGAGAGGAACGGTGGG
CGGCAGGCGACGTCATTCGAGGCGCTGGTGCCCGAGAAAATGCGGGCGAG
GAAGCGGGTGGGGCTCCCGTCAAACAGCTCGGTGCCGCGGTCGCTCCGCT
CAAGACGCCGGCCGGCTCCGACGCTCCGGCGGCCGAGGACGACGCGGCGA
GGGCGGGCGGCCTGCCGCTTGCTCTTGCCGGGGAAGCGGGTGGGGCTCCC
GTCAAACAGCTCGGTGCCGCGGTCGCTCCGCTCAAGACGCCGGCCGGCTC
CGACGCTCCGGCGGCCGAGGACGACGCGGCGAGGGCGGGCGGCCTGCCGC
TTGCTCTTGCCGGG
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