mRNA_L-elsbetiae_contig4875.12788.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4875.12788.1
Unique NamemRNA_L-elsbetiae_contig4875.12788.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4875.12788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4875contigL-elsbetiae_contig4875:4224..4907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size686
Cds size684
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816480.7895193-CDS-L-elsbetiae_contig4875:4223..49071622816480.7895193-CDS-L-elsbetiae_contig4875:4223..4907Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4875 4224..4907 +
1691683590.540096-CDS-L-elsbetiae_contig4875:4223..49071691683590.540096-CDS-L-elsbetiae_contig4875:4223..4907Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4875 4224..4907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4875.12788.1prot_L-elsbetiae_contig4875.12788.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4875 4224..4907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4875.12788.1

>prot_L-elsbetiae_contig4875.12788.1 ID=prot_L-elsbetiae_contig4875.12788.1|Name=mRNA_L-elsbetiae_contig4875.12788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=228bp
RCSSPAPPAATGKTPSAALEGDPTRASSDTANAARSARGPFSTLGSDAAG
SAAASDAHARSTGGATSTFFSPAAAAAAPAGTSAGVPPGGCSRGLALLEI
LLPSFSAFAPGARGGAVAAATVGWAALSAAGNASPAAAAAARGPRMAGEK
EEEEEKEEEGSAFGPSLIAVAAAAATATAAADPDTSCEPPRAAGTGRSAL
ISGTAAAATGASSDRGIPIACAGDGSAR
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mRNA from alignment at L-elsbetiae_contig4875:4224..4907+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4875.12788.1 ID=mRNA_L-elsbetiae_contig4875.12788.1|Name=mRNA_L-elsbetiae_contig4875.12788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig4875:4224..4907+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTGTTCCTCTCCTGCCCCGCCAGCCGCTACCGGCAAGACGCCCTCTGC
GGCCCTCGAGGGGGACCCGACCCGCGCGTCGTCCGACACCGCCAACGCGG
CCCGTTCGGCGAGGGGGCCCTTCTCGACGCTCGGCTCTGATGCTGCCGGT
TCCGCGGCCGCATCGGACGCACACGCCCGGTCGACCGGCGGGGCCACCTC
GACTTTCTTCTCGCCAGCAGCAGCAGCAGCGGCACCTGCAGGCACCTCGG
CAGGCGTCCCACCAGGCGGCTGCTCCCGCGGGCTTGCGCTGCTGGAGATC
CTCTTACCCTCTTTCTCCGCGTTCGCCCCGGGCGCACGGGGGGGTGCCGT
CGCCGCCGCCACCGTCGGCTGGGCTGCGTTGTCGGCCGCGGGCAATGCGT
CGCCGGCGGCGGCTGCGGCCGCGAGAGGCCCGCGAATGGCCGGGGAAAAG
GAGGAGGAGGAGGAAAAGGAGGAGGAGGGGTCCGCCTTCGGCCCATCGCT
CATCGCCGTCGCCGCTGCCGCTGCCACTGCCACTGCCGCTGCCGATCCAG
ACACCTCTTGCGAGCCTCCCCGCGCGGCAGGAACAGGAAGGTCCGCCCTG
ATCTCCGGGACAGCAGCAGCGGCGACGGGCGCGTCGTCCGACCGAGGCAT
CCCGATCGCCTGCGCGGGGGACGGCTCGGCGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4875:4224..4907+

>mRNA_L-elsbetiae_contig4875.12788.1 ID=mRNA_L-elsbetiae_contig4875.12788.1|Name=mRNA_L-elsbetiae_contig4875.12788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1368bp|location=Sequence derived from alignment at L-elsbetiae_contig4875:4224..4907+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTGTTCCTCTCCTGCCCCGCCAGCCGCTACCGGCAAGACGCCCTCTGC
GGCCCTCGAGGGGGACCCGACCCGCGCGTCGTCCGACACCGCCAACGCGG
CCCGTTCGGCGAGGGGGCCCTTCTCGACGCTCGGCTCTGATGCTGCCGGT
TCCGCGGCCGCATCGGACGCACACGCCCGGTCGACCGGCGGGGCCACCTC
GACTTTCTTCTCGCCAGCAGCAGCAGCAGCGGCACCTGCAGGCACCTCGG
CAGGCGTCCCACCAGGCGGCTGCTCCCGCGGGCTTGCGCTGCTGGAGATC
CTCTTACCCTCTTTCTCCGCGTTCGCCCCGGGCGCACGGGGGGGTGCCGT
CGCCGCCGCCACCGTCGGCTGGGCTGCGTTGTCGGCCGCGGGCAATGCGT
CGCCGGCGGCGGCTGCGGCCGCGAGAGGCCCGCGAATGGCCGGGGAAAAG
GAGGAGGAGGAGGAAAAGGAGGAGGAGGGGTCCGCCTTCGGCCCATCGCT
CATCGCCGTCGCCGCTGCCGCTGCCACTGCCACTGCCGCTGCCGATCCAG
ACACCTCTTGCGAGCCTCCCCGCGCGGCAGGAACAGGAAGGTCCGCCCTG
ATCTCCGGGACAGCAGCAGCGGCGACGGGCGCGTCGTCCGACCGAGGCAT
CCCGATCGCCTGCGCGGGGGACGGCTCGGCGAGGCGCTGTTCCTCTCCTG
CCCCGCCAGCCGCTACCGGCAAGACGCCCTCTGCGGCCCTCGAGGGGGAC
CCGACCCGCGCGTCGTCCGACACCGCCAACGCGGCCCGTTCGGCGAGGGG
GCCCTTCTCGACGCTCGGCTCTGATGCTGCCGGTTCCGCGGCCGCATCGG
ACGCACACGCCCGGTCGACCGGCGGGGCCACCTCGACTTTCTTCTCGCCA
GCAGCAGCAGCAGCGGCACCTGCAGGCACCTCGGCAGGCGTCCCACCAGG
CGGCTGCTCCCGCGGGCTTGCGCTGCTGGAGATCCTCTTACCCTCTTTCT
CCGCGTTCGCCCCGGGCGCACGGGGGGGTGCCGTCGCCGCCGCCACCGTC
GGCTGGGCTGCGTTGTCGGCCGCGGGCAATGCGTCGCCGGCGGCGGCTGC
GGCCGCGAGAGGCCCGCGAATGGCCGGGGAAAAGGAGGAGGAGGAGGAAA
AGGAGGAGGAGGGGTCCGCCTTCGGCCCATCGCTCATCGCCGTCGCCGCT
GCCGCTGCCACTGCCACTGCCGCTGCCGATCCAGACACCTCTTGCGAGCC
TCCCCGCGCGGCAGGAACAGGAAGGTCCGCCCTGATCTCCGGGACAGCAG
CAGCGGCGACGGGCGCGTCGTCCGACCGAGGCATCCCGATCGCCTGCGCG
GGGGACGGCTCGGCGAGG
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