mRNA_L-elsbetiae_contig4873.12787.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4873.12787.1
Unique NamemRNA_L-elsbetiae_contig4873.12787.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4873.12787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4873contigL-elsbetiae_contig4873:7564..8710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-08_004240.2
Exons3
Model size515
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4873.12787.1prot_L-elsbetiae_contig4873.12787.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4873 7649..8697 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816480.6477563-UTR-L-elsbetiae_contig4873:7563..76481622816480.6477563-UTR-L-elsbetiae_contig4873:7563..7648Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4873 7564..7648 -
1691683590.4650052-UTR-L-elsbetiae_contig4873:7563..76481691683590.4650052-UTR-L-elsbetiae_contig4873:7563..7648Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4873 7564..7648 -
1622816480.7151875-UTR-L-elsbetiae_contig4873:8697..87101622816480.7151875-UTR-L-elsbetiae_contig4873:8697..8710Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4873 8698..8710 -
1691683590.507466-UTR-L-elsbetiae_contig4873:8697..87101691683590.507466-UTR-L-elsbetiae_contig4873:8697..8710Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4873 8698..8710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816480.668465-CDS-L-elsbetiae_contig4873:7648..79061622816480.668465-CDS-L-elsbetiae_contig4873:7648..7906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4873 7649..7906 -
1691683590.475929-CDS-L-elsbetiae_contig4873:7648..79061691683590.475929-CDS-L-elsbetiae_contig4873:7648..7906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4873 7649..7906 -
1622816480.6807463-CDS-L-elsbetiae_contig4873:8246..83571622816480.6807463-CDS-L-elsbetiae_contig4873:8246..8357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4873 8247..8357 -
1691683590.4860818-CDS-L-elsbetiae_contig4873:8246..83571691683590.4860818-CDS-L-elsbetiae_contig4873:8246..8357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4873 8247..8357 -
1622816480.6980753-CDS-L-elsbetiae_contig4873:8649..86971622816480.6980753-CDS-L-elsbetiae_contig4873:8649..8697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4873 8650..8697 -
1691683590.4972093-CDS-L-elsbetiae_contig4873:8649..86971691683590.4972093-CDS-L-elsbetiae_contig4873:8649..8697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4873 8650..8697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4873.12787.1

>prot_L-elsbetiae_contig4873.12787.1 ID=prot_L-elsbetiae_contig4873.12787.1|Name=mRNA_L-elsbetiae_contig4873.12787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MKTREKAGEKSHRSLTIDNYNGAVYDFGMVIDRAEVPSAADYVRRACAFC
CGQNWQKALEDVDRSIAAKETAEALLLRGRILACMRRWKLAVADYDAVLE
RWPDRSGEARVAREEALMPYVPLPMMSDEDAARLAAGE*
back to top

mRNA from alignment at L-elsbetiae_contig4873:7564..8710-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4873.12787.1 ID=mRNA_L-elsbetiae_contig4873.12787.1|Name=mRNA_L-elsbetiae_contig4873.12787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1147bp|location=Sequence derived from alignment at L-elsbetiae_contig4873:7564..8710- (Laminarionema elsbetiae ELsaHSoW15)
GTTATCGTCTTTCATGAAAACACGAGAGAAAGCCGGGGAGAAATCTCACC
GATCTTTAACCGTGAGAGAATCCATGTAAAATGAGACTCGATATCGACAG
GTCTCATAGCATTCAGCATGAGGTTTACAGTAGTGTTGTGTTTCGTTACG
TAGCTCGAAGAATAGAAGATGTACATACACATATCATCGCCGTCTCGTGG
TGAAACGCGCGCTTTTTGTATTTTGTATTCATTCCTCTGCGTAGACTGAC
TGCAAGCGATGTCTCAACTCACCGGTCTCACATCTTCCCGCCGTGGCTTA
ATTTTCTTCTACCAACCGTCCCAGCCCCACTTCTCATGACTTCCAAACGG
CAGATCGACAACTACAATGGGGCTGTCTACGACTTCGGCATGGTCATCGA
CCGCGCCGAGGTGCCCTCTGCTGCCGACTACGTCCGACGAGCCTGTGCGT
TCTGCTGCGGACAGGTGAGTGTAGAAACTAACTCGTGCGAAACAGTGTAT
CGTCATCCAAACCGGATTCTTGTTCTCCCCGGCCCTTCATTGTCTGCCAA
ATACCGATCCGCAACAGCAACCTTTATCCCCGGAGGCCGAAGGGTTTTGC
GCACGCGCGTTTGTCTGGTAGTTATGTAGGTGTCTGAGGAGCTTGTCCGG
TGCGGTGAAATGCGAGCACGAAGAAAACCCGGACATCTATTCAAGAACCC
GATCCAACCAATTCATCCACCAAAGATCCACACAATATCAACAGCAATAA
TGTTGCCCACCACACGCCGAAACAACTCGGACGGCCACGCAATAAACCCA
ACAGAACTGGCAGAAGGCGCTTGAAGACGTGGACCGCTCAATCGCGGCCA
AAGAAACAGCGGAGGCGTTATTGTTGAGAGGACGAATCCTGGCCTGCATG
CGGAGGTGGAAGCTCGCGGTGGCCGACTACGACGCCGTCTTGGAGCGCTG
GCCCGATCGTTCAGGAGAGGCTCGCGTAGCCAGAGAAGAGGCGCTGATGC
CCTACGTTCCCCTGCCTATGATGAGCGACGAGGACGCTGCCCGGTTAGCT
GCCGGAGAGTGACCAACGTGTGCGTTGGCACTTCTTTGGAACCCTCCAAG
CCCGGGTGTGCGTTAAAATTGCCGGTATGCGTCGCCGAAGAAGCCCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig4873:7564..8710-

>mRNA_L-elsbetiae_contig4873.12787.1 ID=mRNA_L-elsbetiae_contig4873.12787.1|Name=mRNA_L-elsbetiae_contig4873.12787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig4873:7564..8710- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAACACGAGAGAAAGCCGGGGAGAAATCTCACCGATCTTTAACCAT
GAAAACACGAGAGAAAGCCGGGGAGAAATCTCACCGATCTTTAACCATCG
ACAACTACAATGGGGCTGTCTACGACTTCGGCATGGTCATCGACCGCGCC
GAGGTGCCCTCTGCTGCCGACTACGTCCGACGAGCCTGTGCGTTCTGCTG
CGGACAGATCGACAACTACAATGGGGCTGTCTACGACTTCGGCATGGTCA
TCGACCGCGCCGAGGTGCCCTCTGCTGCCGACTACGTCCGACGAGCCTGT
GCGTTCTGCTGCGGACAGAACTGGCAGAAGGCGCTTGAAGACGTGGACCG
CTCAATCGCGGCCAAAGAAACAGCGGAGGCGTTATTGTTGAGAGGACGAA
TCCTGGCCTGCATGCGGAGGTGGAAGCTCGCGGTGGCCGACTACGACGCC
GTCTTGGAGCGCTGGCCCGATCGTTCAGGAGAGGCTCGCGTAGCCAGAGA
AGAGGCGCTGATGCCCTACGTTCCCCTGCCTATGATGAGCGACGAGGACG
CTGCCCGGTTAGCTGCCGGAGAGTGAAACTGGCAGAAGGCGCTTGAAGAC
GTGGACCGCTCAATCGCGGCCAAAGAAACAGCGGAGGCGTTATTGTTGAG
AGGACGAATCCTGGCCTGCATGCGGAGGTGGAAGCTCGCGGTGGCCGACT
ACGACGCCGTCTTGGAGCGCTGGCCCGATCGTTCAGGAGAGGCTCGCGTA
GCCAGAGAAGAGGCGCTGATGCCCTACGTTCCCCTGCCTATGATGAGCGA
CGAGGACGCTGCCCGGTTAGCTGCCGGAGAGTGA
back to top